Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.UX8DIM Arachis hypogaea HOM05D004349 ORTHO05D005097 9.2e-78 293.5 151 100.0
arahy.Tifrunner.gnm1.ann1.9IE653 Arachis hypogaea HOM05D004349 ORTHO05D005097 2.3e-68 262.3 169 85.8
arahy.Tifrunner.gnm1.ann1.FMT65J Arachis hypogaea HOM05D004349 ORTHO05D005097 5.1e-68 261.2 169 85.2
arahy.Tifrunner.gnm1.ann1.2RRL5Q Arachis hypogaea HOM05D004349 ORTHO05D005097 4.0e-65 251.5 197 73.6
Glyma.08G213500 Glycine max HOM05D004349 ORTHO05D005097 3.8e-63 245.0 166 80.1
Glyma.07G029300 Glycine max HOM05D004349 ORTHO05D005097 8.4e-63 243.8 166 79.5
Medtr6g471120 Medicago truncatula HOM05D004349 ORTHO05D005097 8.4e-63 243.8 166 79.5
Ca_01401_v3 Cicer arietinum L. HOM05D004349 ORTHO05D005097 1.1e-62 243.4 166 78.9
Psat5g280400 Pisum sativum HOM05D004349 ORTHO05D005097 1.1e-62 243.4 166 79.5
Phvul.010G156700 Phaseolus vulgaris HOM05D004349 ORTHO05D005097 1.4e-62 243.0 166 79.5
Medtr2g094720 Medicago truncatula HOM05D004349 ORTHO05D005097 2.4e-62 242.3 166 78.9
TPR.G11586 Trifolium pratense HOM05D004349 ORTHO05D005097 4.2e-62 241.5 169 78.1
TAR623G1044 Trochodendron aralioides HOM05D004349 ORTHO05D005097 6.0e-61 237.7 161 77.0
QL11p005722 Quercus lobata HOM05D004349 ORTHO05D005097 1.8e-60 236.1 166 75.9
COL.COLO4_29437 Corchorus olitorius HOM05D004349 ORTHO05D005097 3.9e-60 235.0 166 75.9
Gohir.D11G331900 Gossypium hirsutum HOM05D004349 ORTHO05D005097 3.9e-60 235.0 169 75.1
Gorai.007G362800 Gossypium raimondii HOM05D004349 ORTHO05D005097 3.9e-60 235.0 169 75.1
CiPaw.09G026100 Carya illinoinensis HOM05D004349 ORTHO05D005097 5.1e-60 234.6 166 75.9
ClCG10G017820 Citrullus lanatus HOM05D004349 ORTHO05D005097 1.1e-59 233.4 166 75.9
FvH4_6g21430 Fragaria vesca HOM05D004349 ORTHO05D005097 1.1e-59 233.4 167 75.4
FAN05G0412 Fragaria x ananassa HOM05D004349 ORTHO05D005097 1.1e-59 233.4 167 75.4
FAN05G3233 Fragaria x ananassa HOM05D004349 ORTHO05D005097 1.1e-59 233.4 167 75.4
LjContig00564g0000037 Lotus japonicus HOM05D004349 ORTHO05D005097 1.1e-59 233.4 169 76.3
Prupe.7G086000 Prunus persica HOM05D004349 ORTHO05D005097 1.1e-59 233.4 167 73.7
RcHm_v2.0_Chr4g0406251 Rosa chinensis HOM05D004349 ORTHO05D005097 1.1e-59 233.4 167 75.4
MELO3C009592.2 Cucumis melo HOM05D004349 ORTHO05D005097 1.9e-59 232.6 166 75.9
FAN02G1450 Fragaria x ananassa HOM05D004349 ORTHO05D005097 1.9e-59 232.6 167 75.4
Duzib093G0127 Durio zibethinus HOM05D004349 ORTHO05D005097 2.5e-59 232.3 169 74.6
GSVIVG01033427001 Vitis vinifera HOM05D004349 ORTHO05D005097 2.5e-59 232.3 169 73.4
Haze_20078 Corylus avellana HOM05D004349 ORTHO05D005097 3.3e-59 231.9 166 75.3
Dinv25025 Davidia involucrata HOM05D004349 ORTHO05D005097 4.3e-59 231.5 165 75.2
Sed0001935 Sechium edule HOM05D004349 ORTHO05D005097 7.4e-59 230.7 166 75.9
Solyc04g081430.3 Solanum lycopersicum HOM05D004349 ORTHO05D005097 7.4e-59 230.7 169 72.8
Sopen04g035040 Solanum pennellii HOM05D004349 ORTHO05D005097 7.4e-59 230.7 169 72.8
Cfa020113 Carpinus fangiana HOM05D004349 ORTHO05D005097 9.6e-59 230.3 166 74.7
Atru.chr8.1222 Acer truncatum HOM05D004349 ORTHO05D005097 1.3e-58 229.9 166 74.1
Ciclev10012936m.g Citrus clementina HOM05D004349 ORTHO05D005097 1.6e-58 229.6 169 73.4
QL05p072253 Quercus lobata HOM05D004349 ORTHO05D005097 1.6e-58 229.6 166 73.5
TWI74G1533 Tripterygium wilfordii HOM05D004349 ORTHO05D005097 1.6e-58 229.6 166 74.7
Cc09_g02100 Coffea canephora HOM05D004349 ORTHO05D005097 2.1e-58 229.2 169 74.6
MD14G1049500 Malus domestica HOM05D004349 ORTHO05D005097 2.1e-58 229.2 167 73.1
Sed0019694 Sechium edule HOM05D004349 ORTHO05D005097 2.1e-58 229.2 166 75.9
PSO528G0119 Papaver somniferum HOM05D004349 ORTHO05D005097 2.8e-58 228.8 166 73.5
PSO170G4263 Papaver somniferum HOM05D004349 ORTHO05D005097 4.8e-58 228.0 166 73.5
Aqoxy1G00443 Aquilegia oxysepala HOM05D004349 ORTHO05D005097 6.2e-58 227.6 165 73.3
Nitab4.5_0001874g0080 Nicotiana tabacum HOM05D004349 ORTHO05D005097 6.2e-58 227.6 169 71.6
Potri.016G062800 Populus trichocarpa HOM05D004349 ORTHO05D005097 8.1e-58 227.3 169 72.8
Actinidia01590 Actinidia chinensis HOM05D004349 ORTHO05D005097 1.1e-57 226.9 165 73.9
MD12G1050700 Malus domestica HOM05D004349 ORTHO05D005097 1.4e-57 226.5 167 72.5
CsaV3_7G005510 Cucumis sativus L. HOM05D004349 ORTHO05D005097 2.4e-57 225.7 166 75.3
Peaxi162Scf00463g00127 Petunia axillaris HOM05D004349 ORTHO05D005097 3.1e-57 225.3 169 71.0
Cpa.g.sc85.16 Carica papaya HOM05D004349 ORTHO05D005097 4.0e-57 224.9 169 72.2
THA.LOC104821832 Tarenaya hassleriana HOM05D004349 ORTHO05D005097 4.0e-57 224.9 166 73.5
TPR.G23269 Trifolium pratense HOM05D004349 ORTHO05D005097 5.3e-57 224.6 166 74.1
Manes.08G039900 Manihot esculenta HOM05D004349 ORTHO05D005097 6.9e-57 224.2 169 72.8
EL10Ac2g02766 Beta vulgaris HOM05D004349 ORTHO05D005097 2.6e-56 222.2 166 70.5
Hma1.2p1_0516F.1_g170550 Hydrangea macrophylla HOM05D004349 ORTHO05D005097 3.4e-56 221.9 165 71.5
Ah.13g075520 Amaranthus hybridus HOM05D004349 ORTHO05D005097 4.5e-56 221.5 169 70.4
TWI77G0543 Tripterygium wilfordii HOM05D004349 ORTHO05D005097 4.5e-56 221.5 166 72.9
CANSAT54G2032 Cannabis sativa HOM05D004349 ORTHO05D005097 5.8e-56 221.1 169 69.8
FAN09G4703 Fragaria x ananassa HOM05D004349 ORTHO05D005097 5.8e-56 221.1 184 67.9
ECA240G0294 Erigeron canadensis HOM05D004349 ORTHO05D005097 7.6e-56 220.7 169 72.8
FAN14G0676 Fragaria x ananassa HOM05D004349 ORTHO05D005097 7.6e-56 220.7 184 67.9
FAN14G3215 Fragaria x ananassa HOM05D004349 ORTHO05D005097 7.6e-56 220.7 184 67.9
AL6G12510 Arabidopsis lyrata HOM05D004349 ORTHO05D005097 1.7e-55 219.5 169 69.8
Migut.L01584 Erythranthe guttata HOM05D004349 ORTHO05D005097 1.7e-55 219.5 169 69.8
Sp6g39510 Schrenkiella parvula HOM05D004349 ORTHO05D005097 1.7e-55 219.5 169 69.8
Thhalv10021663m.g Eutrema salsugineum HOM05D004349 ORTHO05D005097 2.2e-55 219.2 169 69.2
Lalb_Chr23g0277751 Lupinus albus HOM05D004349 ORTHO05D005097 2.9e-55 218.8 166 71.7
PGSC0003DMG401009863 Solanum tuberosum HOM05D004349 ORTHO05D005097 8.4e-55 217.2 186 65.6
Thhalv10014853m.g Eutrema salsugineum HOM05D004349 ORTHO05D005097 1.1e-54 216.9 169 69.2
Lalb_Chr19g0125421 Lupinus albus HOM05D004349 ORTHO05D005097 1.1e-54 216.9 166 69.9
Rhsim04G0092200 Rhododendron simsii HOM05D004349 ORTHO05D005097 1.1e-54 216.9 165 69.1
MSTRG.10496 Avicennia marina HOM05D004349 ORTHO05D005097 1.4e-54 216.5 169 69.2
Rhsim04G0092400 Rhododendron simsii HOM05D004349 ORTHO05D005097 1.4e-54 216.5 165 69.1
VMungo0331G0313 Vigna mungo HOM05D004349 ORTHO05D005097 1.4e-54 216.5 148 79.1
Carub.0006s0201 Capsella rubella HOM05D004349 ORTHO05D005097 1.9e-54 216.1 169 68.0
AT5G03220 Arabidopsis thaliana HOM05D004349 ORTHO05D005097 5.5e-54 214.5 169 68.0
DCAR_018883 Daucus carota HOM05D004349 ORTHO05D005097 5.5e-54 214.5 182 65.4
Nn2g15821 Nelumbo nucifera HOM05D004349 ORTHO05D005097 9.3e-54 213.8 171 68.4
AL6G12940 Arabidopsis lyrata HOM05D004349 ORTHO05D005097 1.2e-53 213.4 166 68.7
Aa31LG1G21860 Aethionema arabicum HOM05D004349 ORTHO05D005097 1.6e-53 213.0 169 68.0
Nitab4.5_0000571g0040 Nicotiana tabacum HOM05D004349 ORTHO05D005097 2.1e-53 212.6 192 62.5
SGA_v2.0_scaffold21G09532 Striga asiatica HOM05D004349 ORTHO05D005097 3.5e-53 211.8 169 69.2
AT5G03500 Arabidopsis thaliana HOM05D004349 ORTHO05D005097 1.8e-52 209.5 169 66.9
Thecc.05G180500 Theobroma cacao HOM05D004349 ORTHO05D005097 3.9e-52 208.4 149 74.5
CARHR040500 Cardamine hirsuta HOM05D004349 ORTHO05D005097 5.1e-52 208.0 169 65.1
CARHR210130 Cardamine hirsuta HOM05D004349 ORTHO05D005097 5.1e-52 208.0 169 66.3
ECA248G3305 Erigeron canadensis HOM05D004349 ORTHO05D005097 6.7e-52 207.6 169 68.0
Hund26707 Selenicereus undatus HOM05D004349 ORTHO05D005097 8.7e-52 207.2 207 58.0
Sabra06G0151800 Salix brachista HOM05D004349 ORTHO05D005097 1.9e-51 206.1 150 73.3
Lj2C360G6 Lonicera japonica HOM05D004349 ORTHO05D005097 2.5e-51 205.7 149 73.2
TAR623G0936 Trochodendron aralioides HOM05D004349 ORTHO05D005097 4.3e-51 204.9 149 72.5
Eucgr.A02508 Eucalyptus grandis HOM05D004349 ORTHO05D005097 5.6e-51 204.5 149 72.5
SEGI_10501 Sequoiadendron giganteum HOM05D004349 ORTHO05D005097 9.6e-51 203.8 166 63.3
BcaC03g13019 Brassica carinata HOM05D004349 ORTHO05D005097 1.3e-50 203.4 169 66.3
BolC2t06089H Brassica oleracea HOM05D004349 ORTHO05D005097 2.8e-50 202.2 169 65.7
AUR62015286 Chenopodium quinoa HOM05D004349 ORTHO05D005097 8.1e-50 200.7 149 70.5
ATR0580G353 Amborella trichopoda HOM05D004349 ORTHO05D005097 1.4e-49 199.9 147 71.4
Gohir.A11G314900 Gossypium hirsutum HOM05D004349 ORTHO05D005097 1.8e-49 199.5 143 74.1
SHI30021 Sapria himalayana HOM05D004349 ORTHO05D005097 1.8e-49 199.5 166 64.5
Lsat_1_v5_gn_1_58740 Lactuca sativa HOM05D004349 ORTHO05D005097 6.9e-49 197.6 145 73.8
Rhsim10G0130900 Rhododendron simsii HOM05D004349 ORTHO05D005097 9.0e-49 197.2 211 54.0
HPP92_013495 Vanilla planifolia HOM05D004349 ORTHO05D005097 9.0e-49 197.2 155 69.7
BraA02t04750Z Brassica rapa HOM05D004349 ORTHO05D005097 1.5e-48 196.4 150 69.3
HPP92_026048 Vanilla planifolia HOM05D004349 ORTHO05D005097 7.6e-48 194.1 155 69.0
MBI18_g03872_MAGBIO Magnolia biondii HOM05D004349 ORTHO05D005097 1.0e-47 193.7 165 65.5
Mapoly0052s0099 Marchantia polymorpha HOM05D004349 ORTHO05D005097 2.2e-47 192.6 166 61.4
Os04g0661800 Oryza sativa ssp. japonica HOM05D004349 ORTHO05D005097 2.9e-47 192.2 167 65.3
unitig_37.g12649 Utricularia gibba HOM05D006346 ORTHO05D007910 2.9e-47 192.2 171 62.6
Zm00001eb067450 Zea mays HOM05D004349 ORTHO05D005097 8.4e-47 190.7 167 64.1
Prupe.6G266300 Prunus persica HOM05D004349 ORTHO05D005097 3.2e-46 188.7 178 62.4
CDE02G3593 Ceratophyllum demersum HOM05D000001 ORTHO05D000424 2.1e-45 186.0 152 66.4
CSS0044984 Camellia sinensis var. sinensis HOM05D004349 ORTHO05D005097 4.6e-45 184.9 150 68.7
BraA10t45308Z Brassica rapa HOM05D004349 ORTHO05D005097 6.0e-45 184.5 149 67.1
CAN.G311.28 Capsicum annuum HOM05D004349 ORTHO05D005097 7.9e-45 184.1 117 78.6
PGR004G2245 Punica granatum HOM05D004349 ORTHO05D005097 1.0e-44 183.7 117 78.6
Zm00001eb432780 Zea mays HOM05D004349 ORTHO05D005097 1.1e-43 180.3 167 62.3
vmacro17893 Vaccinium macrocarpon HOM05D004349 ORTHO05D005097 1.3e-42 176.8 236 47.9
Prupe.8G249100 Prunus persica HOM05D004349 ORTHO05D005097 1.4e-41 173.3 159 61.6
A10p32710 Brassica napus HOM05D004349 ORTHO05D005097 3.1e-41 172.2 149 63.1
Prupe.1G181600 Prunus persica HOM05D004349 ORTHO05D005097 3.1e-41 172.2 157 63.7
Sc13g0002530 Simmondsia chinensis HOM05D004349 ORTHO05D005097 5.3e-41 171.4 116 73.3
Carub.0006s2456 Capsella rubella HOM05D004349 ORTHO05D005097 3.4e-40 168.7 170 60.6
C02p00910 Brassica napus HOM05D004349 ORTHO05D005097 1.3e-39 166.8 149 62.4
HanXRQChr01g0024771 Helianthus annuus HOM05D004349 ORTHO05D005097 2.9e-39 165.6 124 74.2
C09p73550 Brassica napus HOM05D004349 ORTHO05D005097 1.9e-38 162.9 147 61.9
Prupe.1G300700 Prunus persica HOM05D004349 ORTHO05D005097 1.9e-38 162.9 122 71.3
Prupe.1G547000 Prunus persica HOM05D004349 ORTHO05D005097 1.9e-38 162.9 122 71.3
Prupe.7G024200 Prunus persica HOM05D004349 ORTHO05D005097 1.9e-38 162.9 122 71.3
Prupe.3G021700 Prunus persica HOM05D004349 ORTHO05D005097 4.2e-38 161.8 122 70.5
CSS0033717 Camellia sinensis var. sinensis HOM05D004349 ORTHO05D005097 7.2e-38 161.0 133 65.4
HanXRQChr03g0090511 Helianthus annuus HOM05D004349 ORTHO05D005097 9.3e-38 160.6 130 66.9
BcaNung06685 Brassica carinata HOM05D004349 ORTHO05D005097 2.7e-37 159.1 151 60.3
CBR_g46752 Chara braunii HOM05D004349 ORTHO05D005097 6.1e-37 157.9 188 49.5
Prupe.1G035300 Prunus persica HOM05D004349 ORTHO05D005097 6.7e-36 154.5 122 68.0
SMO340G0091 Selaginella moellendorffii HOM05D004349 ORTHO05D005097 1.1e-35 153.7 157 55.4
BolC9t60086H Brassica oleracea HOM05D004349 ORTHO05D005097 1.9e-35 152.9 167 54.5
Dinv24030 Davidia involucrata HOM05D004349 ORTHO05D005097 4.3e-35 151.8 124 68.5
AL3G38450 Arabidopsis lyrata HOM05D004349 ORTHO05D005097 5.7e-35 151.4 125 65.6
Oeu057599.1 Olea europaea HOM05D004349 ORTHO05D005097 4.1e-33 145.2 90 77.8
ATR0564G039 Amborella trichopoda HOM05D004349 ORTHO05D005097 2.6e-32 142.5 146 58.9
RcHm_v2.0_Chr3g0478001 Rosa chinensis HOM05D004349 ORTHO05D005097 1.4e-30 136.7 108 69.4
SMO358G0681 Selaginella moellendorffii HOM05D004349 ORTHO05D005097 2.1e-29 132.9 136 54.4
Prupe.2G085900 Prunus persica HOM05D004349 ORTHO05D005097 2.4e-25 119.4 90 71.1
FAN05G0350 Fragaria x ananassa HOM05D004349 ORTHO05D005097 7.7e-24 114.4 95 70.5
Pp3c5_20850 Physcomitrium patens HOM05D004349 ORTHO05D005097 1.5e-19 100.1 117 51.3
Sabra16G0064800 Salix brachista HOM05D004349 ORTHO05D005097 3.3e-19 99.0 83 66.3
CSS0042444 Camellia sinensis var. sinensis HOM05D004349 ORTHO05D005097 2.8e-18 95.9 75 66.7
AL6G12900 Arabidopsis lyrata HOM05D004349 ORTHO05D005097 4.1e-17 92.0 79 62.0
AagrBONN_evm.TU.Sc2ySwM_362.1623 Anthoceros agrestis HOM05D004349 ORTHO05D005097 4.5e-16 88.6 93 53.8
AagrBONN_evm.TU.Sc2ySwM_117.2767 Anthoceros agrestis HOM05D004349 ORTHO05D005097 5.9e-16 88.2 87 54.0
CARHR099790 Cardamine hirsuta HOM05D004349 ORTHO05D005097 1.1e-14 84.0 82 54.9
RcHm_v2.0_Chr3g0478621 Rosa chinensis HOM05D004349 ORTHO05D005097 2.3e-12 76.3 109 46.8
Rhsim04G0093300 Rhododendron simsii HOM05D004349 ORTHO05D005097 1.2e-11 73.9 73 58.9
RcHm_v2.0_Chr3g0478061 Rosa chinensis HOM05D004349 ORTHO05D005097 1.2e-11 73.9 103 47.6
FAN04G2473 Fragaria x ananassa HOM05D004349 ORTHO05D005097 9.7e-11 70.9 37 83.8
CARHR251030 Cardamine hirsuta HOM05D004349 ORTHO05D005097 1.7e-10 70.1 74 51.4
Rhsim04G0093100 Rhododendron simsii HOM05D004349 ORTHO05D005097 5.3e-09 65.1 36 77.8
CARHR218030 Cardamine hirsuta HOM05D004349 ORTHO05D005097 7.7e-08 61.2 64 53.1
CARHR258920 Cardamine hirsuta HOM05D004349 ORTHO05D005097 5.0e-07 58.5 61 52.5


User provided reference genes

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