Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.URE1QT Arachis hypogaea HOM05D000115 ORTHO05D026883 9.6e-39 162.9 77 100.0
arahy.Tifrunner.gnm1.ann1.F88V81 Arachis hypogaea HOM05D000115 ORTHO05D005317 9.9e-36 152.9 74 97.3
Sabra14G0107000 Salix brachista HOM05D000115 ORTHO05D005317 6.4e-35 150.2 74 94.6
Ciclev10015499m.g Citrus clementina HOM05D000115 ORTHO05D005317 2.4e-34 148.3 74 91.9
Oeu032120.1 Olea europaea HOM05D000115 ORTHO05D005317 2.4e-34 148.3 74 93.2
Actinidia11189 Actinidia chinensis HOM05D000115 ORTHO05D005317 4.2e-34 147.5 74 89.2
Potri.014G141800 Populus trichocarpa HOM05D000115 ORTHO05D005317 7.1e-34 146.7 74 90.5
Manes.01G128800 Manihot esculenta HOM05D000115 ORTHO05D005317 9.3e-34 146.4 74 90.5
Actinidia04671 Actinidia chinensis HOM05D000115 ORTHO05D005317 1.2e-33 146.0 73 90.4
COL.COLO4_33710 Corchorus olitorius HOM05D000115 ORTHO05D005317 1.6e-33 145.6 74 91.9
Dinv12712 Davidia involucrata HOM05D000115 ORTHO05D005317 1.6e-33 145.6 74 90.5
vmacro12438 Vaccinium macrocarpon HOM05D000115 ORTHO05D005317 1.6e-33 145.6 74 91.9
Cfa022004 Carpinus fangiana HOM05D000115 ORTHO05D005317 2.1e-33 145.2 74 91.9
QL08p043628 Quercus lobata HOM05D000115 ORTHO05D005317 2.1e-33 145.2 74 90.5
ECA246G1880 Erigeron canadensis HOM05D000115 ORTHO05D005317 3.5e-33 144.4 74 87.8
Haze_13473 Corylus avellana HOM05D000115 ORTHO05D005317 4.6e-33 144.1 74 90.5
Lalb_Chr17g0348361 Lupinus albus HOM05D000115 ORTHO05D005317 4.6e-33 144.1 74 91.9
GSVIVG01000823001 Vitis vinifera HOM05D000115 ORTHO05D005317 4.6e-33 144.1 74 90.5
CSS0012954 Camellia sinensis var. sinensis HOM05D000115 ORTHO05D005317 7.9e-33 143.3 74 90.5
CSS0025244 Camellia sinensis var. sinensis HOM05D000115 ORTHO05D005317 7.9e-33 143.3 74 90.5
Lalb_Chr20g0114141 Lupinus albus HOM05D000115 ORTHO05D005317 7.9e-33 143.3 73 90.4
Thecc.01G159200 Theobroma cacao HOM05D000115 ORTHO05D005317 7.9e-33 143.3 74 89.2
arahy.Tifrunner.gnm1.ann1.I1PD8T Arachis hypogaea HOM05D000115 ORTHO05D005317 1.0e-32 142.9 73 91.8
TAR626G1968 Trochodendron aralioides HOM05D000115 ORTHO05D005317 1.0e-32 142.9 74 90.5
Duzib264G0129 Durio zibethinus HOM05D000115 ORTHO05D005317 1.3e-32 142.5 73 90.4
Eucgr.A01959 Eucalyptus grandis HOM05D000115 ORTHO05D005317 1.3e-32 142.5 74 87.8
HanXRQChr06g0170821 Helianthus annuus HOM05D000115 ORTHO05D005317 1.8e-32 142.1 74 89.2
Lsat_1_v5_gn_3_36161 Lactuca sativa HOM05D000115 ORTHO05D005317 2.3e-32 141.7 74 89.2
Medtr3g452710 Medicago truncatula HOM05D000115 ORTHO05D005317 2.3e-32 141.7 74 89.2
Oeu026480.1 Olea europaea HOM05D000115 ORTHO05D005317 2.3e-32 141.7 74 89.2
PGR042G1481 Punica granatum HOM05D000115 ORTHO05D005317 2.3e-32 141.7 74 90.5
Sc12g0003720 Simmondsia chinensis HOM05D000115 ORTHO05D005317 2.3e-32 141.7 74 87.8
Duzib187G1471 Durio zibethinus HOM05D000115 ORTHO05D005317 3.0e-32 141.4 74 89.2
Psat5g183840 Pisum sativum HOM05D000115 ORTHO05D005317 3.9e-32 141.0 73 89.0
TPR.G1867 Trifolium pratense HOM05D000115 ORTHO05D005317 3.9e-32 141.0 74 87.8
Ca_14623_v3 Cicer arietinum L. HOM05D000115 ORTHO05D005317 5.1e-32 140.6 74 87.8
Glyma.08G311000 Glycine max HOM05D000115 ORTHO05D005317 5.1e-32 140.6 74 89.2
Gohir.D07G075500 Gossypium hirsutum HOM05D000115 ORTHO05D005317 5.1e-32 140.6 74 86.5
Hma1.2p1_0178F.1_g078130 Hydrangea macrophylla HOM05D000115 ORTHO05D005317 5.1e-32 140.6 74 87.8
CANSAT64G1624 Cannabis sativa HOM05D000115 ORTHO05D005317 6.7e-32 140.2 74 85.1
Gohir.A07G070900 Gossypium hirsutum HOM05D000115 ORTHO05D005317 8.7e-32 139.8 74 86.5
Lj1A585G39 Lonicera japonica HOM05D000115 ORTHO05D005317 8.7e-32 139.8 74 85.1
Lj6g0018112 Lotus japonicus HOM05D000115 ORTHO05D005317 8.7e-32 139.8 73 91.8
Ah.01g016030 Amaranthus hybridus HOM05D000115 ORTHO05D005317 1.9e-31 138.7 75 85.3
arahy.Tifrunner.gnm1.ann1.P96M7D Arachis hypogaea HOM05D000115 ORTHO05D026883 1.9e-31 138.7 72 93.1
Manes.02G086700 Manihot esculenta HOM05D000115 ORTHO05D005317 2.5e-31 138.3 74 86.5
Phvul.006G035200 Phaseolus vulgaris HOM05D000115 ORTHO05D005317 2.5e-31 138.3 73 89.0
Prupe.3G168900 Prunus persica HOM05D000115 ORTHO05D005317 2.5e-31 138.3 74 89.2
arahy.Tifrunner.gnm1.ann1.LX1LZF Arachis hypogaea HOM05D000115 ORTHO05D005317 3.3e-31 137.9 73 89.0
Glyma.18G104600 Glycine max HOM05D000115 ORTHO05D005317 3.3e-31 137.9 74 87.8
Gorai.001G079700 Gossypium raimondii HOM05D000115 ORTHO05D005317 3.3e-31 137.9 73 87.7
Atru.chr6.3552 Acer truncatum HOM05D000115 ORTHO05D005317 4.3e-31 137.5 74 85.1
EL10Ac9g21017 Beta vulgaris HOM05D000115 ORTHO05D005317 4.3e-31 137.5 74 85.1
HanXRQChr17g0541261 Helianthus annuus HOM05D000115 ORTHO05D005317 4.3e-31 137.5 74 85.1
Hund00828 Selenicereus undatus HOM05D000115 ORTHO05D005317 4.3e-31 137.5 72 87.5
arahy.Tifrunner.gnm1.ann1.8KB6JI Arachis hypogaea HOM05D000115 ORTHO05D005317 5.6e-31 137.1 66 98.5
CSS0028049 Camellia sinensis var. sinensis HOM05D001875 ORTHO05D000106 5.6e-31 137.1 74 86.5
HPP92_021772 Vanilla planifolia HOM05D000115 ORTHO05D005317 5.6e-31 137.1 74 83.8
CAN.G1481.9 Capsicum annuum HOM05D000115 ORTHO05D005317 7.4e-31 136.7 74 86.5
Oeu013826.2 Olea europaea HOM05D000115 ORTHO05D005317 7.4e-31 136.7 72 87.5
Peaxi162Scf00154g00714 Petunia axillaris HOM05D000115 ORTHO05D005317 7.4e-31 136.7 74 85.1
Sopen07g029230 Solanum pennellii HOM05D000115 ORTHO05D005317 7.4e-31 136.7 74 86.5
Nitab4.5_0001121g0140 Nicotiana tabacum HOM05D000115 ORTHO05D005317 9.6e-31 136.3 74 85.1
Rhsim06G0121700 Rhododendron simsii HOM05D000115 ORTHO05D005317 9.6e-31 136.3 74 85.1
RcHm_v2.0_Chr2g0150851 Rosa chinensis HOM05D000115 ORTHO05D005317 9.6e-31 136.3 74 85.1
PGSC0003DMG400017340 Solanum tuberosum HOM05D000115 ORTHO05D005317 9.6e-31 136.3 74 87.8
CiPaw.03G188000 Carya illinoinensis HOM05D000115 ORTHO05D005317 1.3e-30 136.0 74 82.4
Lalb_Chr10g0106801 Lupinus albus HOM05D000115 ORTHO05D005317 1.3e-30 136.0 74 87.8
ClCG09G022290 Citrullus lanatus HOM05D000115 ORTHO05D005317 1.6e-30 135.6 75 80.0
MELO3C014459.2 Cucumis melo HOM05D000115 ORTHO05D005317 1.6e-30 135.6 75 80.0
MD09G1156000 Malus domestica HOM05D000115 ORTHO05D005317 1.6e-30 135.6 74 83.8
MD17G1142100 Malus domestica HOM05D000115 ORTHO05D005317 1.6e-30 135.6 74 83.8
MSTRG.15059 Avicennia marina HOM05D000115 ORTHO05D005317 2.1e-30 135.2 74 85.1
Nn3g20994 Nelumbo nucifera HOM05D000115 ORTHO05D005317 2.1e-30 135.2 74 85.1
Nitab4.5_0002737g0050 Nicotiana tabacum HOM05D000115 ORTHO05D005317 2.1e-30 135.2 74 83.8
FAN05G2006 Fragaria x ananassa HOM05D000115 ORTHO05D005317 3.7e-30 134.4 74 85.1
FAN14G2802 Fragaria x ananassa HOM05D000115 ORTHO05D005317 3.7e-30 134.4 74 85.1
FAN14G5116 Fragaria x ananassa HOM05D000115 ORTHO05D005317 3.7e-30 134.4 74 85.1
Gohir.D10G088200 Gossypium hirsutum HOM05D000115 ORTHO05D005317 3.7e-30 134.4 74 86.5
CsaV3_6G037960 Cucumis sativus L. HOM05D000115 ORTHO05D005317 4.8e-30 134.0 75 78.7
TWI59G1105 Tripterygium wilfordii HOM05D000115 ORTHO05D005317 4.8e-30 134.0 74 85.1
FvH4_6g37780 Fragaria vesca HOM05D000115 ORTHO05D005317 6.2e-30 133.7 74 83.8
Lsat_1_v5_gn_8_32001 Lactuca sativa HOM05D000115 ORTHO05D005317 6.2e-30 133.7 74 81.1
Gohir.A10G100700 Gossypium hirsutum HOM05D000115 ORTHO05D005317 8.1e-30 133.3 74 86.5
Gorai.011G097000 Gossypium raimondii HOM05D000115 ORTHO05D005317 8.1e-30 133.3 74 85.1
SalBow7G3865 Salvia bowleyana HOM05D000115 ORTHO05D005317 8.1e-30 133.3 74 82.4
FAN09G3340 Fragaria x ananassa HOM05D000115 ORTHO05D005317 1.1e-29 132.9 74 83.8
PSO675G6449 Papaver somniferum HOM05D000115 ORTHO05D005317 1.1e-29 132.9 74 79.7
Aa31LG1G24560 Aethionema arabicum HOM05D000115 ORTHO05D005317 1.4e-29 132.5 73 83.6
Cc05_g09190 Coffea canephora HOM05D000115 ORTHO05D005317 1.4e-29 132.5 72 84.7
AUR62024011 Chenopodium quinoa HOM05D000115 ORTHO05D005317 1.8e-29 132.1 74 81.1
PSO541G0742 Papaver somniferum HOM05D000115 ORTHO05D005317 2.4e-29 131.7 74 78.4
SGA_v2.0_scaffold9G04898 Striga asiatica HOM05D000115 ORTHO05D005317 2.4e-29 131.7 74 82.4
Aqoxy1G01905 Aquilegia oxysepala HOM05D000115 ORTHO05D005317 3.1e-29 131.3 74 78.4
THA.LOC104803104 Tarenaya hassleriana HOM05D000115 ORTHO05D005317 4.0e-29 131.0 72 86.1
Sed0025939 Sechium edule HOM05D000115 ORTHO05D005317 6.9e-29 130.2 74 78.4
BcaB06g29264 Brassica carinata HOM05D000115 ORTHO05D005317 9.0e-29 129.8 74 79.7
DCAR_013303 Daucus carota HOM05D000115 ORTHO05D005317 9.0e-29 129.8 74 81.1
Sp4g24930 Schrenkiella parvula HOM05D000115 ORTHO05D005317 9.0e-29 129.8 74 79.7
Ah.01g004800 Amaranthus hybridus HOM05D000115 ORTHO05D005317 1.5e-28 129.0 75 77.3
A04p32400 Brassica napus HOM05D000115 ORTHO05D005317 1.5e-28 129.0 73 80.8
Migut.M00220 Erythranthe guttata HOM05D000115 ORTHO05D005317 1.5e-28 129.0 74 81.1
ATR0602G177 Amborella trichopoda HOM05D000115 ORTHO05D005317 2.0e-28 128.6 74 82.4
BcaC02g07219 Brassica carinata HOM05D000115 ORTHO05D005317 2.6e-28 128.3 74 78.4
CARHR137890 Cardamine hirsuta HOM05D000115 ORTHO05D005317 2.6e-28 128.3 74 79.7
ClCG02G018280 Citrullus lanatus HOM05D000115 ORTHO05D005317 2.6e-28 128.3 74 79.7
Thhalv10016582m.g Eutrema salsugineum HOM05D000115 ORTHO05D005317 2.6e-28 128.3 74 79.7
C04p69920 Brassica napus HOM05D000115 ORTHO05D005317 4.5e-28 127.5 73 79.5
BolC4t28491H Brassica oleracea HOM05D000115 ORTHO05D005317 4.5e-28 127.5 73 79.5
Sed0008288 Sechium edule HOM05D000115 ORTHO05D005317 4.5e-28 127.5 74 75.7
AT2G42810 Arabidopsis thaliana HOM05D000115 ORTHO05D005317 1.7e-27 125.6 73 80.8
AL4G41420 Arabidopsis lyrata HOM05D000115 ORTHO05D005317 2.2e-27 125.2 75 77.3
A05p03220 Brassica napus HOM05D000115 ORTHO05D005317 2.2e-27 125.2 74 77.0
C04p03870 Brassica napus HOM05D000115 ORTHO05D005317 2.2e-27 125.2 74 77.0
BolC4t22023H Brassica oleracea HOM05D000115 ORTHO05D005317 2.2e-27 125.2 74 77.0
BraA05t19312Z Brassica rapa HOM05D000115 ORTHO05D005317 2.2e-27 125.2 74 77.0
Carub.0004s2525 Capsella rubella HOM05D000115 ORTHO05D005317 2.2e-27 125.2 74 77.0
BraA04t18693Z Brassica rapa HOM05D000115 ORTHO05D005317 3.8e-27 124.4 73 78.1
CsaV3_6G015680 Cucumis sativus L. HOM05D000115 ORTHO05D005317 6.5e-27 123.6 74 74.3
Os05g0204900 Oryza sativa ssp. japonica HOM05D000115 ORTHO05D005317 6.5e-27 123.6 75 66.7
SEGI_20856 Sequoiadendron giganteum HOM05D000115 ORTHO05D005317 8.4e-27 123.2 74 73.0
MELO3C019702.2 Cucumis melo HOM05D000115 ORTHO05D005317 1.4e-26 122.5 74 75.7
CDE02G1626 Ceratophyllum demersum HOM05D000115 ORTHO05D005317 6.0e-25 117.1 74 73.0
Medtr2g100130 Medicago truncatula HOM05D000115 ORTHO05D005317 3.9e-24 114.4 72 73.6
Medtr2g100160 Medicago truncatula HOM05D000115 ORTHO05D005317 5.1e-24 114.0 72 70.8
Zm00001eb283980 Zea mays HOM05D000115 ORTHO05D005317 4.3e-23 110.9 72 61.1
SHI24462 Sapria himalayana HOM05D000115 ORTHO05D005317 3.7e-22 107.8 69 72.5
Pp3c7_11180 Physcomitrium patens HOM05D000115 ORTHO05D005317 6.3e-22 107.1 74 64.9
SHI23353 Sapria himalayana HOM05D000115 ORTHO05D005317 6.3e-22 107.1 74 66.2
Mapoly0014s0155 Marchantia polymorpha HOM05D000115 ORTHO05D005317 8.2e-22 106.7 74 66.2
Pp3c11_17000 Physcomitrium patens HOM05D000115 ORTHO05D005317 1.5e-20 102.4 72 63.9
AagrBONN_evm.TU.Sc2ySwM_117.3245 Anthoceros agrestis HOM05D000115 ORTHO05D005317 2.2e-19 98.6 74 59.5
CSS0010128 Camellia sinensis var. sinensis HOM05D000115 ORTHO05D005317 6.5e-19 97.1 50 90.0
Lj3C1010T10 Lonicera japonica HOM05D000115 ORTHO05D026883 3.2e-18 94.7 53 86.8
Solyc07g055860.4 Solanum lycopersicum HOM05D000115 ORTHO05D005317 1.2e-17 92.8 50 86.0
MD12G1049700 Malus domestica HOM05D000115 ORTHO05D005317 2.7e-17 91.7 59 71.2
SMO301G0033 Selaginella moellendorffii HOM05D000115 ORTHO05D005317 7.9e-17 90.1 72 54.2
SHI29318 Sapria himalayana HOM05D000115 ORTHO05D005317 1.8e-16 89.0 57 70.2
Cre07.g326800 Chlamydomonas reinhardtii HOM05D000115 ORTHO05D005317 6.7e-16 87.0 70 50.0
SHI31213 Sapria himalayana HOM05D000115 ORTHO05D005317 1.5e-15 85.9 56 69.6
BcaC04g18743 Brassica carinata HOM05D000115 ORTHO05D005317 4.8e-14 80.9 74 45.9
BolC9t58756H Brassica oleracea HOM05D000115 ORTHO05D026883 6.3e-14 80.5 74 45.9
MCO11G918 Micromonas commoda HOM05D000115 ORTHO05D005317 8.2e-14 80.1 73 50.7
BcaC04g20155 Brassica carinata HOM05D000115 ORTHO05D005317 1.4e-13 79.3 74 51.4
Cpa.g.sc50.66 Carica papaya HOM05D000115 ORTHO05D005317 9.1e-13 76.6 36 94.4
C09p59110 Brassica napus HOM05D000115 ORTHO05D005317 1.5e-12 75.9 74 44.6
CDE06G1396 Ceratophyllum demersum HOM05D000115 ORTHO05D005317 1.4e-10 69.3 43 72.1
PSO017G5708 Papaver somniferum HOM05D000115 ORTHO05D036445 1.9e-10 68.9 36 80.6
PRCOL_00004674 Prasinoderma coloniale HOM05D000115 ORTHO05D005317 4.2e-10 67.8 72 43.1
BcaC04g20156 Brassica carinata HOM05D000115 ORTHO05D005317 1.6e-09 65.9 62 50.0
Cfa023451 Carpinus fangiana HOM05D000115 ORTHO05D005317 2.7e-09 65.1 71 40.8
Actinidia32527 Actinidia chinensis HOM05D000115 ORTHO05D005317 1.8e-08 62.4 48 64.6
PSO170G5826 Papaver somniferum HOM05D000115 ORTHO05D302943 2.3e-08 62.0 40 70.0
Haze_26991 Corylus avellana HOM05D000115 ORTHO05D005317 5.1e-08 60.8 73 34.2
AUR62041331 Chenopodium quinoa HOM05D000115 ORTHO05D005317 2.0e-07 58.9 32 81.2
PSO229G0050 Papaver somniferum HOM05D000115 ORTHO05D303621 3.3e-07 58.2 73 42.5


User provided reference genes

Program Settings