Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.U642C8 Arachis hypogaea HOM05D007742 ORTHO05D004072 0.0e+00 1167.1 582 100.0
arahy.Tifrunner.gnm1.ann1.T3P4RE Arachis hypogaea HOM05D007742 ORTHO05D004072 0.0e+00 1122.8 582 96.7
arahy.Tifrunner.gnm1.ann1.L07F2C Arachis hypogaea HOM05D007742 ORTHO05D004072 1.5e-88 331.3 584 40.6
Lalb_Chr22g0359781 Lupinus albus HOM05D007742 ORTHO05D004072 2.5e-86 323.9 630 37.6
arahy.Tifrunner.gnm1.ann1.H02ZFL Arachis hypogaea HOM05D007742 ORTHO05D004072 9.1e-81 305.4 580 39.8
Lj1g0006134 Lotus japonicus HOM05D007742 ORTHO05D004072 3.0e-76 290.4 668 34.4
Glyma.19G105400 Glycine max HOM05D007742 ORTHO05D004072 1.1e-75 288.5 640 34.8
Phvul.001G079300 Phaseolus vulgaris HOM05D007742 ORTHO05D004072 4.5e-72 276.6 635 33.9
Psat3g092040 Pisum sativum HOM05D007742 ORTHO05D004072 4.5e-72 276.6 636 33.5
VMungo0464G0864 Vigna mungo HOM05D007742 ORTHO05D004072 7.7e-72 275.8 633 35.1
Glyma.19G105500 Glycine max HOM05D007742 ORTHO05D004072 1.6e-69 268.1 600 33.5
VMungo1383G1777 Vigna mungo HOM05D007742 ORTHO05D004072 3.0e-68 263.8 556 35.4
Ca_08225_v3 Cicer arietinum L. HOM05D007742 ORTHO05D004072 5.2e-60 236.5 539 33.8
TPR.G26439 Trifolium pratense HOM05D007742 ORTHO05D004072 2.4e-49 201.1 605 29.4
Lj2g0008812 Lotus japonicus HOM05D007742 ORTHO05D004072 2.8e-37 161.0 196 42.9
Lj1g0016784 Lotus japonicus HOM05D007742 ORTHO05D001134 2.3e-36 157.9 197 43.1
Cfa007153 Carpinus fangiana HOM05D007742 ORTHO05D004072 1.3e-34 152.1 641 26.1
CiPaw.15G155500 Carya illinoinensis HOM05D007742 ORTHO05D004072 2.7e-32 144.4 617 27.2
Atru.chr6.2712 Acer truncatum HOM05D007742 ORTHO05D004072 7.8e-32 142.9 595 25.5
Manes.04G094400 Manihot esculenta HOM05D007742 ORTHO05D004072 3.4e-27 127.5 578 24.9
QL02p068827 Quercus lobata HOM05D007742 ORTHO05D004072 2.9e-26 124.4 625 25.1
Ciclev10014656m.g Citrus clementina HOM05D007742 ORTHO05D004072 4.9e-26 123.6 612 25.8
QL02p069032 Quercus lobata HOM05D007742 ORTHO05D004072 1.4e-25 122.1 641 26.2
Potri.009G112676 Populus trichocarpa HOM05D007742 ORTHO05D004072 3.9e-23 114.0 597 25.8
Prupe.3G314400 Prunus persica HOM05D007742 ORTHO05D004072 3.9e-23 114.0 676 24.3
Potri.T125604 Populus trichocarpa HOM05D007742 ORTHO05D004072 8.6e-23 112.8 597 25.8
TAR374G0633 Trochodendron aralioides HOM05D007742 ORTHO05D004072 1.1e-22 112.5 175 37.1
Sc16g0003130 Simmondsia chinensis HOM05D007742 ORTHO05D004072 1.5e-22 112.1 141 37.6
Glyma.16G046800 Glycine max HOM05D007742 ORTHO05D004072 1.9e-22 111.7 116 56.9
Sabra09G0086100 Salix brachista HOM05D007742 ORTHO05D004072 2.8e-21 107.8 590 25.4
Sabra09G0086000 Salix brachista HOM05D007742 ORTHO05D004072 3.1e-20 104.4 611 25.2
Ciclev10014788m.g Citrus clementina HOM05D007742 ORTHO05D004072 4.0e-20 104.0 139 38.8
Haze_14967 Corylus avellana HOM05D007742 ORTHO05D004072 1.5e-19 102.1 653 23.6
Thhalv10013728m.g Eutrema salsugineum HOM05D009880 ORTHO05D004072 7.5e-19 99.8 136 37.5
EL10As2g23272 Beta vulgaris HOM05D007742 ORTHO05D004072 2.9e-18 97.8 145 35.9
Actinidia37712 Actinidia chinensis HOM05D007742 ORTHO05D004072 1.9e-17 95.1 657 21.6
CSS0026315 Camellia sinensis var. sinensis HOM05D007742 ORTHO05D004072 2.4e-17 94.7 180 31.7
PGSC0003DMG400027518 Solanum tuberosum HOM05D008124 ORTHO05D004072 2.4e-17 94.7 137 35.8
CARHR199510 Cardamine hirsuta HOM05D009880 ORTHO05D004072 7.1e-17 93.2 131 37.4
CARHR284540 Cardamine hirsuta HOM05D009880 ORTHO05D004072 7.1e-17 93.2 141 35.5
Medtr4g082160 Medicago truncatula HOM05D007742 ORTHO05D004072 7.1e-17 93.2 127 38.6
PSO170G3234 Papaver somniferum HOM05D007742 ORTHO05D004072 1.6e-16 92.0 139 32.4
PSO357G0543 Papaver somniferum HOM05D007742 ORTHO05D004072 1.6e-16 92.0 139 33.8
Rhsim08G0038200 Rhododendron simsii HOM05D000001 ORTHO05D000003 2.7e-16 91.3 691 21.6
Sopen01g040750 Solanum pennellii HOM05D008124 ORTHO05D004072 3.5e-16 90.9 147 34.0
Gohir.D07G088900 Gossypium hirsutum HOM05D018961 ORTHO05D004072 6.0e-16 90.1 229 27.9
Gorai.001G095300 Gossypium raimondii HOM05D018961 ORTHO05D004072 7.8e-16 89.7 168 30.4
CAN.G134.65 Capsicum annuum HOM05D008124 ORTHO05D004072 1.0e-15 89.4 159 33.3
Aqoxy5G03036 Aquilegia oxysepala HOM05D007742 ORTHO05D004072 1.7e-15 88.6 164 34.1
Gohir.A07G082400 Gossypium hirsutum HOM05D018961 ORTHO05D004072 1.7e-15 88.6 228 29.8
BcaB07g31107 Brassica carinata HOM05D009880 ORTHO05D004072 3.0e-15 87.8 199 31.2
Rhsim07G0073400 Rhododendron simsii HOM05D008124 ORTHO05D004072 3.9e-15 87.4 153 35.3
HPP92_017732 Vanilla planifolia HOM05D008124 ORTHO05D004072 6.6e-15 86.7 145 35.2
CANSAT64G0620 Cannabis sativa HOM05D008124 ORTHO05D004072 8.6e-15 86.3 148 35.8
Duzib138G1433 Durio zibethinus HOM05D018961 ORTHO05D004072 8.6e-15 86.3 150 32.0
Nitab4.5_0005905g0010 Nicotiana tabacum HOM05D008124 ORTHO05D004072 8.6e-15 86.3 107 38.3
Gorai.001G196100 Gossypium raimondii HOM05D018961 ORTHO05D004072 1.1e-14 85.9 135 31.1
TAR627G0754 Trochodendron aralioides HOM05D008124 ORTHO05D004072 1.1e-14 85.9 136 33.8
Potri.T125504 Populus trichocarpa HOM05D007742 ORTHO05D004072 1.9e-14 85.1 191 31.4
Cc07_g01400 Coffea canephora HOM05D007742 ORTHO05D004072 2.5e-14 84.7 554 24.0
Mapoly0141s0028 Marchantia polymorpha HOM05D008124 ORTHO05D004072 2.5e-14 84.7 157 32.5
Nitab4.5_0002247g0100 Nicotiana tabacum HOM05D008124 ORTHO05D004072 2.5e-14 84.7 107 37.4
QL02p069084 Quercus lobata HOM05D007742 ORTHO05D004072 2.5e-14 84.7 126 38.1
Gohir.A07G168700 Gossypium hirsutum HOM05D018961 ORTHO05D004072 3.3e-14 84.3 137 31.4
Sed0023600 Sechium edule HOM05D008124 ORTHO05D004072 3.3e-14 84.3 132 34.8
Dinv20269 Davidia involucrata HOM05D008124 ORTHO05D004072 5.6e-14 83.6 109 38.5
Eucgr.K01332 Eucalyptus grandis HOM05D008124 ORTHO05D004072 7.3e-14 83.2 143 35.0
Zm00001eb059980 Zea mays HOM05D008124 ORTHO05D004072 7.3e-14 83.2 169 31.4
CANSAT64G0751 Cannabis sativa HOM05D007742 ORTHO05D004072 2.1e-13 81.6 599 23.0
Nn4g22099 Nelumbo nucifera HOM05D007742 ORTHO05D004072 8.1e-13 79.7 152 32.2
Cfa000684 Carpinus fangiana HOM05D008124 ORTHO05D004072 4.0e-12 77.4 169 32.0
MD17G1125500 Malus domestica HOM05D008124 ORTHO05D004072 6.8e-12 76.6 157 30.6
Medtr2g078580 Medicago truncatula HOM05D007742 ORTHO05D004072 6.8e-12 76.6 119 40.3
THA.LOC104823128 Tarenaya hassleriana HOM05D009880 ORTHO05D004072 6.8e-12 76.6 108 39.8
Nn4g26556 Nelumbo nucifera HOM05D008124 ORTHO05D004072 1.2e-11 75.9 200 29.5
CDE02G3354 Ceratophyllum demersum HOM05D008124 ORTHO05D004072 1.5e-11 75.5 105 31.4
Prupe.3G190200 Prunus persica HOM05D008124 ORTHO05D004072 3.4e-11 74.3 157 29.3
Aa31LG2G11760 Aethionema arabicum HOM05D009880 ORTHO05D004072 4.4e-11 73.9 469 23.2
Cc07_g01390 Coffea canephora HOM05D007742 ORTHO05D004072 4.4e-11 73.9 106 37.7
Sed0004202 Sechium edule HOM05D008124 ORTHO05D004072 4.4e-11 73.9 145 31.0
PSO541G0277 Papaver somniferum HOM05D008124 ORTHO05D004072 5.8e-11 73.6 146 30.8
EL10As2g23251 Beta vulgaris HOM05D007742 ORTHO05D004072 7.6e-11 73.2 101 40.6
Migut.A00628 Erythranthe guttata HOM05D007742 ORTHO05D004072 7.6e-11 73.2 543 21.5
AUR62037803 Chenopodium quinoa HOM05D007742 ORTHO05D004072 9.9e-11 72.8 99 37.4
CsaV3_4G007470 Cucumis sativus L. HOM05D008124 ORTHO05D004072 1.3e-10 72.4 150 31.3
Carub.0002s0844 Capsella rubella HOM05D009880 ORTHO05D004072 2.2e-10 71.6 136 30.1
ClCG07G010840 Citrullus lanatus HOM05D008124 ORTHO05D004072 2.2e-10 71.6 142 28.2
Sabra09G0085900 Salix brachista HOM05D007742 ORTHO05D004072 6.4e-10 70.1 465 24.5
Solyc01g097070.4 Solanum lycopersicum HOM05D008124 ORTHO05D004072 6.4e-10 70.1 117 33.3
FAN14G4038 Fragaria x ananassa HOM05D000027 ORTHO05D004072 8.4e-10 69.7 158 29.1
CSS0000950 Camellia sinensis var. sinensis HOM05D007742 ORTHO05D004072 1.4e-09 68.9 171 29.8
Haze_06124 Corylus avellana HOM05D008124 ORTHO05D004072 1.4e-09 68.9 147 30.6
Thhalv10013799m.g Eutrema salsugineum HOM05D008124 ORTHO05D004072 1.4e-09 68.9 117 35.9
CSS0006654 Camellia sinensis var. sinensis HOM05D008124 ORTHO05D004072 1.9e-09 68.6 61 44.3
CSS0017436 Camellia sinensis var. sinensis HOM05D008124 ORTHO05D004072 1.9e-09 68.6 61 44.3
Sp6g17920 Schrenkiella parvula HOM05D008124 ORTHO05D004072 3.2e-09 67.8 117 35.9
AL5G21140 Arabidopsis lyrata HOM05D008124 ORTHO05D004072 5.4e-09 67.0 114 36.8
Carub.0005s0890 Capsella rubella HOM05D008124 ORTHO05D004072 5.4e-09 67.0 113 37.2
RcHm_v2.0_Chr2g0154211 Rosa chinensis HOM05D008124 ORTHO05D004072 7.1e-09 66.6 168 27.4
AT1G54930 Arabidopsis thaliana HOM05D009880 ORTHO05D004072 9.2e-09 66.2 134 29.1
AT3G42860 Arabidopsis thaliana HOM05D008124 ORTHO05D004072 9.2e-09 66.2 117 35.0
EL10Ac9g22884 Beta vulgaris HOM05D008124 ORTHO05D004072 1.2e-08 65.9 81 37.0
GSVIVG01018616001 Vitis vinifera HOM05D008124 ORTHO05D004072 1.2e-08 65.9 120 35.0
CDE06G0867 Ceratophyllum demersum HOM05D007742 ORTHO05D004072 2.1e-08 65.1 88 35.2
FvH4_6g39844 Fragaria vesca HOM05D008124 ORTHO05D004072 2.1e-08 65.1 169 26.0
PGR004G0249 Punica granatum HOM05D008124 ORTHO05D004072 2.7e-08 64.7 136 31.6
Hund19588 Selenicereus undatus HOM05D007742 ORTHO05D004072 2.7e-08 64.7 515 22.9
Hma1.2p1_0868F.1_g230420 Hydrangea macrophylla HOM05D007742 ORTHO05D004072 3.5e-08 64.3 189 28.6
AL1G65420 Arabidopsis lyrata HOM05D009880 ORTHO05D004072 6.0e-08 63.5 138 29.0
SGA_v2.0_scaffold305G47989 Striga asiatica HOM05D007742 ORTHO05D004072 6.0e-08 63.5 107 33.6
Peaxi162Scf00647g00014 Petunia axillaris HOM05D008124 ORTHO05D004072 1.0e-07 62.8 98 35.7
THA.LOC104810998 Tarenaya hassleriana HOM05D008124 ORTHO05D004072 1.3e-07 62.4 106 34.0
QL09p009056 Quercus lobata HOM05D004225 ORTHO05D004728 3.0e-07 61.2 161 29.8
C09p47180 Brassica napus HOM05D008124 ORTHO05D004072 3.9e-07 60.8 114 35.1
BolC9t57572H Brassica oleracea HOM05D008124 ORTHO05D004072 3.9e-07 60.8 114 35.1
CARHR152360 Cardamine hirsuta HOM05D008124 ORTHO05D004072 3.9e-07 60.8 108 36.1
Aa31LG4G13260 Aethionema arabicum HOM05D008124 ORTHO05D004072 1.9e-06 58.5 138 33.3
A10p13280 Brassica napus HOM05D008124 ORTHO05D004072 2.5e-06 58.2 114 34.2
BraA10t43425Z Brassica rapa HOM05D008124 ORTHO05D004072 2.5e-06 58.2 114 34.2
Aa31LG2G11730 Aethionema arabicum HOM05D009880 ORTHO05D004072 3.3e-06 57.8 78 39.7
CSS0005680 Camellia sinensis var. sinensis HOM05D000034 ORTHO05D000037 7.3e-06 56.6 66 39.4
CSS0050094 Camellia sinensis var. sinensis HOM05D000034 ORTHO05D000037 7.3e-06 56.6 66 39.4
HPP92_017701 Vanilla planifolia HOM05D008124 ORTHO05D004072 7.3e-06 56.6 108 32.4
Duzib116G0777 Durio zibethinus HOM05D008124 ORTHO05D004072 9.6e-06 56.2 83 34.9
Manes.09G074700 Manihot esculenta HOM05D008124 ORTHO05D004072 9.6e-06 56.2 55 45.5


User provided reference genes

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