Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.U5DX0D Arachis hypogaea HOM05D003463 ORTHO05D004206 3.2e-53 211.5 106 100.0
arahy.Tifrunner.gnm1.ann1.20IHL0 Arachis hypogaea HOM05D003463 ORTHO05D004206 4.7e-20 101.3 87 62.1
arahy.Tifrunner.gnm1.ann1.NK9NB9 Arachis hypogaea HOM05D003463 ORTHO05D004206 2.1e-15 85.9 94 55.3
Nn1g03744 Nelumbo nucifera HOM05D003463 ORTHO05D004206 8.9e-11 70.5 91 48.4
Cpa.g.sc8.254 Carica papaya HOM05D003463 ORTHO05D004206 2.0e-10 69.3 71 53.5
Nn1g06924 Nelumbo nucifera HOM05D003463 ORTHO05D004206 3.4e-10 68.6 91 48.4
Atru.chr6.3118 Acer truncatum HOM05D003463 ORTHO05D004206 7.6e-10 67.4 71 52.1
Dinv10901 Davidia involucrata HOM05D003463 ORTHO05D004206 9.9e-10 67.0 91 45.1
Duzib052G0139 Durio zibethinus HOM05D003463 ORTHO05D004206 1.3e-09 66.6 37 78.4
Cfa014461 Carpinus fangiana HOM05D003463 ORTHO05D004206 1.7e-09 66.2 37 81.1
CiPaw.03G164300 Carya illinoinensis HOM05D003463 ORTHO05D004206 1.7e-09 66.2 79 53.2
Haze_12964 Corylus avellana HOM05D003463 ORTHO05D004206 1.7e-09 66.2 37 81.1
QL08p034245 Quercus lobata HOM05D003463 ORTHO05D004206 1.7e-09 66.2 71 54.9
Manes.13G074400 Manihot esculenta HOM05D003463 ORTHO05D004206 2.2e-09 65.9 37 81.1
Potri.007G119300 Populus trichocarpa HOM05D003463 ORTHO05D004206 2.2e-09 65.9 69 52.2
TAR629G1280 Trochodendron aralioides HOM05D003463 ORTHO05D004206 2.2e-09 65.9 93 44.1
GSVIVG01030649001 Vitis vinifera HOM05D003463 ORTHO05D004206 2.2e-09 65.9 37 81.1
Duzib248G0717 Durio zibethinus HOM05D003463 ORTHO05D004206 3.8e-09 65.1 37 75.7
TAR627G1072 Trochodendron aralioides HOM05D003463 ORTHO05D004206 4.9e-09 64.7 37 78.4
BcaNung00300 Brassica carinata HOM05D003463 ORTHO05D004206 6.4e-09 64.3 37 73.0
CSS0023493 Camellia sinensis var. sinensis HOM05D003463 ORTHO05D004206 6.4e-09 64.3 37 78.4
Glyma.06G301900 Glycine max HOM05D003463 ORTHO05D004206 6.4e-09 64.3 37 78.4
Glyma.12G102400 Glycine max HOM05D003463 ORTHO05D004206 6.4e-09 64.3 37 78.4
Lj1C753T3 Lonicera japonica HOM05D003463 ORTHO05D004206 6.4e-09 64.3 69 52.2
COL.COLO4_13026 Corchorus olitorius HOM05D003463 ORTHO05D004206 8.4e-09 63.9 71 49.3
Gohir.A03G162950 Gossypium hirsutum HOM05D003463 ORTHO05D004206 8.4e-09 63.9 71 49.3
Gohir.D02G186400 Gossypium hirsutum HOM05D003463 ORTHO05D004206 8.4e-09 63.9 71 49.3
Gorai.005G208600 Gossypium raimondii HOM05D003463 ORTHO05D004206 8.4e-09 63.9 71 49.3
Psat7g193080 Pisum sativum HOM05D003463 ORTHO05D004206 8.4e-09 63.9 37 75.7
BcaC08g44245 Brassica carinata HOM05D003463 ORTHO05D004206 1.1e-08 63.5 39 71.8
BcaC09g50202 Brassica carinata HOM05D003463 ORTHO05D004206 1.1e-08 63.5 37 73.0
A01p22340 Brassica napus HOM05D003463 ORTHO05D004206 1.1e-08 63.5 37 73.0
A05p17060 Brassica napus HOM05D003463 ORTHO05D004206 1.1e-08 63.5 39 71.8
C01p27890 Brassica napus HOM05D003463 ORTHO05D004206 1.1e-08 63.5 37 73.0
C06p16490 Brassica napus HOM05D003463 ORTHO05D004206 1.1e-08 63.5 39 71.8
BolC1t02722H Brassica oleracea HOM05D003463 ORTHO05D004206 1.1e-08 63.5 37 73.0
BolC6t36852H Brassica oleracea HOM05D003463 ORTHO05D004206 1.1e-08 63.5 39 71.8
BraA01t02149Z Brassica rapa HOM05D003463 ORTHO05D004206 1.1e-08 63.5 37 73.0
BraA05t20607Z Brassica rapa HOM05D003463 ORTHO05D004206 1.1e-08 63.5 39 71.8
TWI36G1584 Tripterygium wilfordii HOM05D003463 ORTHO05D004206 1.1e-08 63.5 37 78.4
Dinv18548 Davidia involucrata HOM05D003463 ORTHO05D004206 1.4e-08 63.2 93 43.0
Medtr4g045743 Medicago truncatula HOM05D003463 ORTHO05D004206 1.4e-08 63.2 37 75.7
Thecc.02G164300 Theobroma cacao HOM05D003463 ORTHO05D004206 1.4e-08 63.2 37 75.7
BcaB02g07835 Brassica carinata HOM05D003463 ORTHO05D004206 1.9e-08 62.8 39 71.8
Ca_20672_v3 Cicer arietinum L. HOM05D003463 ORTHO05D004206 1.9e-08 62.8 37 75.7
Actinidia12489 Actinidia chinensis HOM05D003463 ORTHO05D004206 2.4e-08 62.4 38 73.7
Lj3g0021154 Lotus japonicus HOM05D003463 ORTHO05D004206 2.4e-08 62.4 38 73.7
CiPaw.04G119100 Carya illinoinensis HOM05D003463 ORTHO05D004206 3.2e-08 62.0 37 73.0
vmacro12241 Vaccinium macrocarpon HOM05D003463 ORTHO05D004206 3.2e-08 62.0 37 75.7
Ciclev10014009m.g Citrus clementina HOM05D003463 ORTHO05D004206 4.1e-08 61.6 71 47.9
Lalb_Chr14g0375591 Lupinus albus HOM05D003463 ORTHO05D004206 5.4e-08 61.2 37 75.7
TWI18G0507 Tripterygium wilfordii HOM05D003463 ORTHO05D004206 5.4e-08 61.2 71 47.9
Sp7g13400 Schrenkiella parvula HOM05D003463 ORTHO05D004206 7.1e-08 60.8 56 55.4
TPR.G19054 Trifolium pratense HOM05D003463 ORTHO05D004206 7.1e-08 60.8 37 73.0
Aqoxy4G01913 Aquilegia oxysepala HOM05D003463 ORTHO05D004206 9.2e-08 60.5 37 70.3
AL7G40500 Arabidopsis lyrata HOM05D003463 ORTHO05D004206 9.2e-08 60.5 56 55.4
CANSAT64G0087 Cannabis sativa HOM05D003463 ORTHO05D004206 9.2e-08 60.5 37 73.0
CDE11G1115 Ceratophyllum demersum HOM05D003463 ORTHO05D004206 9.2e-08 60.5 87 42.5
Eucgr.A01739 Eucalyptus grandis HOM05D003463 ORTHO05D004206 9.2e-08 60.5 37 73.0
Psat0s3330g0040 Pisum sativum HOM05D003463 ORTHO05D004206 9.2e-08 60.5 37 75.7
SHI10282 Sapria himalayana HOM05D003463 ORTHO05D004206 9.2e-08 60.5 37 73.0
THA.LOC104808502 Tarenaya hassleriana HOM05D003463 ORTHO05D004206 9.2e-08 60.5 37 67.6
AT4G15180 Arabidopsis thaliana HOM05D003463 ORTHO05D004206 1.2e-07 60.1 57 52.6
CARHR221910 Cardamine hirsuta HOM05D003463 ORTHO05D004206 1.2e-07 60.1 37 70.3
Thhalv10024183m.g Eutrema salsugineum HOM05D003463 ORTHO05D004206 1.2e-07 60.1 56 55.4
Potri.017G041100 Populus trichocarpa HOM05D003463 ORTHO05D004206 1.2e-07 60.1 69 46.4
Rhsim06G0155700 Rhododendron simsii HOM05D003463 ORTHO05D004206 1.2e-07 60.1 37 73.0
arahy.Tifrunner.gnm1.ann1.X2Y1CG Arachis hypogaea HOM05D005050 ORTHO05D006198 1.6e-07 59.7 45 68.9
DCAR_021199 Daucus carota HOM05D003463 ORTHO05D004206 1.6e-07 59.7 71 42.3
Phvul.005G112000 Phaseolus vulgaris HOM05D003463 ORTHO05D004206 1.6e-07 59.7 35 77.1
Sabra17G0027900 Salix brachista HOM05D003463 ORTHO05D004206 1.6e-07 59.7 69 44.9
TPR.G30794 Trifolium pratense HOM05D003463 ORTHO05D004206 1.6e-07 59.7 35 74.3
Medtr2g089080 Medicago truncatula HOM05D003463 ORTHO05D004206 2.1e-07 59.3 37 73.0
RcHm_v2.0_Chr2g0160501 Rosa chinensis HOM05D003463 ORTHO05D004206 2.1e-07 59.3 37 73.0
SGA_v2.0_scaffold34G13880 Striga asiatica HOM05D003463 ORTHO05D004206 2.1e-07 59.3 37 70.3
Aa31LG8G8660 Aethionema arabicum HOM05D003463 ORTHO05D004206 2.7e-07 58.9 35 71.4
Lj3g0003812 Lotus japonicus HOM05D003463 ORTHO05D004206 2.7e-07 58.9 37 73.0
Cc05_g05330 Coffea canephora HOM05D003463 ORTHO05D004206 3.5e-07 58.5 37 67.6
MELO3C018791.2 Cucumis melo HOM05D003463 ORTHO05D004206 3.5e-07 58.5 37 70.3
CsaV3_7G003880 Cucumis sativus L. HOM05D003463 ORTHO05D004206 3.5e-07 58.5 37 70.3
arahy.Tifrunner.gnm1.ann1.V19TN9 Arachis hypogaea HOM05D005050 ORTHO05D006198 4.6e-07 58.2 45 66.7
Sed0018482 Sechium edule HOM05D003463 ORTHO05D004206 4.6e-07 58.2 37 70.3
Glyma.13G305000 Glycine max HOM05D003463 ORTHO05D004206 6.0e-07 57.8 35 74.3
Nitab4.5_0001134g0130 Nicotiana tabacum HOM05D003463 ORTHO05D004206 6.0e-07 57.8 37 64.9
Nitab4.5_0003429g0030 Nicotiana tabacum HOM05D003463 ORTHO05D004206 6.0e-07 57.8 37 64.9
PGR042G2093 Punica granatum HOM05D003463 ORTHO05D004206 6.0e-07 57.8 37 67.6
VMungo1080G1634 Vigna mungo HOM05D003463 ORTHO05D004206 6.0e-07 57.8 35 74.3
Lsat_1_v5_gn_8_129901 Lactuca sativa HOM05D003463 ORTHO05D004206 7.8e-07 57.4 37 64.9
Lalb_Chr19g0135651 Lupinus albus HOM05D003463 ORTHO05D004206 7.8e-07 57.4 39 66.7
MD09G1103200 Malus domestica HOM05D003463 ORTHO05D004206 7.8e-07 57.4 37 70.3
Prupe.3G222600 Prunus persica HOM05D003463 ORTHO05D004206 7.8e-07 57.4 37 70.3
Ca_01564_v3 Cicer arietinum L. HOM05D003463 ORTHO05D004206 1.0e-06 57.0 37 67.6
FvH4_6g43760 Fragaria vesca HOM05D003463 ORTHO05D004206 1.0e-06 57.0 37 67.6
FAN02G4525 Fragaria x ananassa HOM05D003463 ORTHO05D004206 1.0e-06 57.0 37 67.6
FAN05G2372 Fragaria x ananassa HOM05D003463 ORTHO05D004206 1.0e-06 57.0 37 67.6
FAN09G4547 Fragaria x ananassa HOM05D003463 ORTHO05D004206 1.0e-06 57.0 37 67.6
FAN14G1979 Fragaria x ananassa HOM05D003463 ORTHO05D004206 1.0e-06 57.0 37 67.6
CDE05G3394 Ceratophyllum demersum HOM05D003463 ORTHO05D004206 1.3e-06 56.6 36 61.1
Oeu035823.1 Olea europaea HOM05D003463 ORTHO05D004206 1.3e-06 56.6 35 74.3
PSO541G5151 Papaver somniferum HOM05D003463 ORTHO05D004206 1.3e-06 56.6 95 40.0
PSO675G4322 Papaver somniferum HOM05D003463 ORTHO05D004206 1.3e-06 56.6 95 40.0
DCAR_009696 Daucus carota HOM05D003463 ORTHO05D004206 1.7e-06 56.2 91 37.4
Glyma.12G196800 Glycine max HOM05D003463 ORTHO05D004206 1.7e-06 56.2 36 69.4
MD17G1091000 Malus domestica HOM05D003463 ORTHO05D004206 1.7e-06 56.2 37 67.6
Oeu011067.1 Olea europaea HOM05D003463 ORTHO05D004206 1.7e-06 56.2 35 71.4
SalBow7G2865 Salvia bowleyana HOM05D003463 ORTHO05D004206 1.7e-06 56.2 40 57.5
Migut.B00660 Erythranthe guttata HOM05D005050 ORTHO05D006198 2.3e-06 55.8 44 59.1
Migut.M00384 Erythranthe guttata HOM05D003463 ORTHO05D004206 3.0e-06 55.5 35 68.6
CSS0001826 Camellia sinensis var. sinensis HOM05D005050 ORTHO05D006198 3.9e-06 55.1 44 61.4
Dinv24255 Davidia involucrata HOM05D005050 ORTHO05D006198 3.9e-06 55.1 44 61.4
Sed0013576 Sechium edule HOM05D005050 ORTHO05D006198 5.1e-06 54.7 44 59.1
HanXRQChr17g0563751 Helianthus annuus HOM05D003463 ORTHO05D004206 6.6e-06 54.3 35 60.0
Peaxi162Scf00007g01417 Petunia axillaris HOM05D003463 ORTHO05D004206 6.6e-06 54.3 56 46.4
Psat1g219800 Pisum sativum HOM05D005050 ORTHO05D006198 6.6e-06 54.3 41 65.9
CAN.G86.25 Capsicum annuum HOM05D003463 ORTHO05D004206 8.6e-06 53.9 37 59.5
ECA233G2663 Erigeron canadensis HOM05D003463 ORTHO05D004206 8.6e-06 53.9 35 62.9
unitig_8.g4614 Utricularia gibba HOM05D003463 ORTHO05D004206 8.6e-06 53.9 36 61.1


User provided reference genes

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