Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.TQGZ2Y Arachis hypogaea HOM05D001355 ORTHO05D003966 5.9e-76 287.3 135 100.0
arahy.Tifrunner.gnm1.ann1.V9SQSD Arachis hypogaea HOM05D001355 ORTHO05D003966 2.0e-52 209.1 135 76.3
arahy.Tifrunner.gnm1.ann1.LY1D8B Arachis hypogaea HOM05D002391 ORTHO05D003966 2.1e-49 199.1 130 73.8
Medtr8g024310 Medicago truncatula HOM05D001355 ORTHO05D004435 1.6e-17 93.2 162 38.9
VMungo0331G2037 Vigna mungo HOM05D001355 ORTHO05D004435 1.6e-17 93.2 162 39.5
Psat0s3525g0080 Pisum sativum HOM05D001355 ORTHO05D004435 2.1e-17 92.8 162 38.9
TPR.G19841 Trifolium pratense HOM05D001355 ORTHO05D004435 2.1e-17 92.8 162 38.9
Glyma.07G049600 Glycine max HOM05D001355 ORTHO05D004435 2.8e-17 92.4 162 38.9
Ca_26062_v3 Cicer arietinum L. HOM05D001355 ORTHO05D004435 4.8e-17 91.7 162 38.3
DCAR_002977 Daucus carota HOM05D001355 ORTHO05D004435 6.2e-17 91.3 162 38.3
vmacro11486 Vaccinium macrocarpon HOM05D001355 ORTHO05D004435 6.2e-17 91.3 162 38.3
CAN.G57.3 Capsicum annuum HOM05D001355 ORTHO05D004435 8.1e-17 90.9 162 37.7
Ca_09545_v3 Cicer arietinum L. HOM05D001355 ORTHO05D004435 8.1e-17 90.9 162 37.7
Glyma.16G018300 Glycine max HOM05D001355 ORTHO05D004435 8.1e-17 90.9 162 38.3
Psat4g164040 Pisum sativum HOM05D001355 ORTHO05D004435 8.1e-17 90.9 162 38.3
Manes.05G016500 Manihot esculenta HOM05D001355 ORTHO05D004435 1.4e-16 90.1 162 38.3
PGR042G0370 Punica granatum HOM05D001355 ORTHO05D004435 1.4e-16 90.1 162 37.7
Rhsim02G0253800 Rhododendron simsii HOM05D001355 ORTHO05D004435 1.4e-16 90.1 162 38.3
SGA_v2.0_scaffold7G04147 Striga asiatica HOM05D002435 ORTHO05D002550 1.4e-16 90.1 161 38.5
arahy.Tifrunner.gnm1.ann1.VQ9M9S Arachis hypogaea HOM05D001355 ORTHO05D004435 1.8e-16 89.7 162 38.3
ClCG06G002270 Citrullus lanatus HOM05D001355 ORTHO05D004435 1.8e-16 89.7 162 37.7
Cc02_g39940 Coffea canephora HOM05D001355 ORTHO05D004435 1.8e-16 89.7 162 38.3
CsaV3_6G008320 Cucumis sativus L. HOM05D001355 ORTHO05D004435 1.8e-16 89.7 162 37.7
Phvul.010G119600 Phaseolus vulgaris HOM05D001355 ORTHO05D004435 1.8e-16 89.7 162 38.3
Actinidia04171 Actinidia chinensis HOM05D001355 ORTHO05D004435 2.4e-16 89.4 162 37.0
MBI12_g11800_MAGBIO Magnolia biondii HOM05D001355 ORTHO05D004435 2.4e-16 89.4 162 37.0
PSO017G0474 Papaver somniferum HOM05D001355 ORTHO05D004435 2.4e-16 89.4 162 37.7
PSO063G1331 Papaver somniferum HOM05D001355 ORTHO05D004435 2.4e-16 89.4 162 37.7
PSO541G6414 Papaver somniferum HOM05D001355 ORTHO05D004435 2.4e-16 89.4 162 37.7
PSO675G4431 Papaver somniferum HOM05D001355 ORTHO05D004435 2.4e-16 89.4 162 37.7
arahy.Tifrunner.gnm1.ann1.0U4Z5X Arachis hypogaea HOM05D001355 ORTHO05D004435 3.1e-16 89.0 164 39.0
MSTRG.9680 Avicennia marina HOM05D001355 ORTHO05D004435 3.1e-16 89.0 161 37.9
Lsat_1_v5_gn_2_75740 Lactuca sativa HOM05D001355 ORTHO05D004435 3.1e-16 89.0 162 37.0
Nitab4.5_0000073g0440 Nicotiana tabacum HOM05D001355 ORTHO05D004435 3.1e-16 89.0 162 37.0
Nitab4.5_0002570g0010 Nicotiana tabacum HOM05D001355 ORTHO05D004435 3.1e-16 89.0 162 37.0
Peaxi162Scf00047g02454 Petunia axillaris HOM05D001355 ORTHO05D004435 3.1e-16 89.0 162 37.0
Dinv18760 Davidia involucrata HOM05D001355 ORTHO05D004435 4.0e-16 88.6 162 37.7
Nitab4.5_0000170g0230 Nicotiana tabacum HOM05D001355 ORTHO05D004435 4.0e-16 88.6 162 37.0
Nitab4.5_0000807g0170 Nicotiana tabacum HOM05D001355 ORTHO05D004435 4.0e-16 88.6 162 37.0
Cpa.g.sc193.13 Carica papaya HOM05D001355 ORTHO05D004435 5.3e-16 88.2 162 37.7
AUR62038348 Chenopodium quinoa HOM05D001355 ORTHO05D004435 5.3e-16 88.2 161 38.5
Dinv32644 Davidia involucrata HOM05D001355 ORTHO05D004435 5.3e-16 88.2 162 37.7
Gorai.007G112900 Gossypium raimondii HOM05D001355 ORTHO05D004435 5.3e-16 88.2 162 38.9
Hund16752 Selenicereus undatus HOM05D001355 ORTHO05D004435 5.3e-16 88.2 161 37.3
COL.COLO4_23047 Corchorus olitorius HOM05D001355 ORTHO05D004435 6.9e-16 87.8 162 38.3
FvH4_7g17660 Fragaria vesca HOM05D001355 ORTHO05D004435 6.9e-16 87.8 162 37.7
FAN01G1819 Fragaria x ananassa HOM05D001355 ORTHO05D004435 6.9e-16 87.8 162 37.7
FAN03G2680 Fragaria x ananassa HOM05D001355 ORTHO05D004435 6.9e-16 87.8 162 37.7
FAN06G2862 Fragaria x ananassa HOM05D001355 ORTHO05D004435 6.9e-16 87.8 162 37.7
FAN06G2960 Fragaria x ananassa HOM05D001355 ORTHO05D004435 6.9e-16 87.8 162 37.7
FAN10G2035 Fragaria x ananassa HOM05D001355 ORTHO05D004435 6.9e-16 87.8 162 37.7
FAN10G3904 Fragaria x ananassa HOM05D001355 ORTHO05D004435 6.9e-16 87.8 162 37.7
MD07G1159600 Malus domestica HOM05D001355 ORTHO05D004435 6.9e-16 87.8 162 37.7
Oeu053274.1 Olea europaea HOM05D001355 ORTHO05D004435 6.9e-16 87.8 157 36.9
Solyc12g009400.2 Solanum lycopersicum HOM05D001355 ORTHO05D004435 6.9e-16 87.8 162 36.4
Solyc12g009410.2 Solanum lycopersicum HOM05D001355 ORTHO05D004435 6.9e-16 87.8 162 36.4
Sopen12g004390 Solanum pennellii HOM05D001355 ORTHO05D004435 6.9e-16 87.8 162 36.4
Sopen12g004400 Solanum pennellii HOM05D001355 ORTHO05D004435 6.9e-16 87.8 162 36.4
PGSC0003DMG400002921 Solanum tuberosum HOM05D001355 ORTHO05D004435 6.9e-16 87.8 162 36.4
PGSC0003DMG402013561 Solanum tuberosum HOM05D001355 ORTHO05D004435 6.9e-16 87.8 162 37.0
TAR375G0155 Trochodendron aralioides HOM05D001355 ORTHO05D004435 6.9e-16 87.8 162 37.0
MELO3C022306.2 Cucumis melo HOM05D001355 ORTHO05D004435 9.0e-16 87.4 162 36.4
Glyma.03G261000 Glycine max HOM05D001355 ORTHO05D004435 9.0e-16 87.4 162 38.3
Glyma.19G260000 Glycine max HOM05D001355 ORTHO05D004435 9.0e-16 87.4 162 38.3
Lsat_1_v5_gn_3_140821 Lactuca sativa HOM05D001355 ORTHO05D004435 9.0e-16 87.4 162 37.0
Phvul.009G257800 Phaseolus vulgaris HOM05D001355 ORTHO05D004435 9.0e-16 87.4 162 38.3
Potri.002G179500 Populus trichocarpa HOM05D001355 ORTHO05D004435 9.0e-16 87.4 162 37.0
Prupe.2G197700 Prunus persica HOM05D001355 ORTHO05D004435 9.0e-16 87.4 162 37.7
RcHm_v2.0_Chr1g0361101 Rosa chinensis HOM05D001355 ORTHO05D004435 9.0e-16 87.4 162 37.7
SalBow6G6731 Salvia bowleyana HOM05D001355 ORTHO05D004435 9.0e-16 87.4 161 37.3
Sed0023392 Sechium edule HOM05D001355 ORTHO05D004435 9.0e-16 87.4 162 37.0
Actinidia28086 Actinidia chinensis HOM05D001355 ORTHO05D004435 1.2e-15 87.0 162 37.0
CiPaw.01G082400 Carya illinoinensis HOM05D001355 ORTHO05D004435 1.2e-15 87.0 162 36.4
Hma1.2p1_0074F.1_g038730 Hydrangea macrophylla HOM05D001355 ORTHO05D004435 1.2e-15 87.0 162 37.0
Lj2A152G22 Lonicera japonica HOM05D001355 ORTHO05D004435 1.2e-15 87.0 162 37.7
unitig_744.g24397 Utricularia gibba HOM05D001355 ORTHO05D004435 1.2e-15 87.0 161 37.3
GSVIVG01027439001 Vitis vinifera HOM05D001355 ORTHO05D004435 1.2e-15 87.0 161 37.9
Actinidia22219 Actinidia chinensis HOM05D001355 ORTHO05D004435 1.5e-15 86.7 162 35.8
Aa31LG5G1160 Aethionema arabicum HOM05D001355 ORTHO05D004435 1.5e-15 86.7 161 37.3
AUR62041497 Chenopodium quinoa HOM05D001355 ORTHO05D004435 1.5e-15 86.7 161 37.9
Ciclev10020210m.g Citrus clementina HOM05D001355 ORTHO05D004435 1.5e-15 86.7 162 38.3
Duzib138G1500 Durio zibethinus HOM05D001355 ORTHO05D004435 1.5e-15 86.7 162 38.3
Migut.D01961 Erythranthe guttata HOM05D001355 ORTHO05D004435 1.5e-15 86.7 161 36.6
Eucgr.E01071 Eucalyptus grandis HOM05D001355 ORTHO05D004435 1.5e-15 86.7 162 37.7
Gohir.A11G101000 Gossypium hirsutum HOM05D001355 ORTHO05D004435 1.5e-15 86.7 162 38.3
Gohir.D11G105600 Gossypium hirsutum HOM05D001355 ORTHO05D004435 1.5e-15 86.7 162 38.3
Oeu007913.1 Olea europaea HOM05D001355 ORTHO05D004435 1.5e-15 86.7 161 37.3
SEGI_39603 Sequoiadendron giganteum HOM05D001355 ORTHO05D004435 1.5e-15 86.7 162 37.0
Thecc.01G333300 Theobroma cacao HOM05D001355 ORTHO05D004435 1.5e-15 86.7 162 38.3
Zm00001eb089020 Zea mays HOM05D001355 ORTHO05D004435 1.5e-15 86.7 164 36.0
Cfa003735 Carpinus fangiana HOM05D001355 ORTHO05D004435 2.0e-15 86.3 162 36.4
Lj3g0000851 Lotus japonicus HOM05D001355 ORTHO05D004435 2.0e-15 86.3 162 37.7
MBI04_g22065_MAGBIO Magnolia biondii HOM05D001355 ORTHO05D004435 2.0e-15 86.3 162 36.4
Nn3g18802 Nelumbo nucifera HOM05D001355 ORTHO05D004435 2.0e-15 86.3 162 37.0
Sabra02G0134400 Salix brachista HOM05D001355 ORTHO05D004435 2.0e-15 86.3 162 36.4
SGA_v2.0_scaffold114G31817 Striga asiatica HOM05D001355 ORTHO05D004435 2.0e-15 86.3 161 36.6
VMungo1309G2338 Vigna mungo HOM05D001355 ORTHO05D004435 2.0e-15 86.3 162 37.7
Atru.chr5.767 Acer truncatum HOM05D001355 ORTHO05D004435 2.6e-15 85.9 158 38.0
Ah.05g178950 Amaranthus hybridus HOM05D001355 ORTHO05D004435 2.6e-15 85.9 161 37.9
arahy.Tifrunner.gnm1.ann1.G7YSG8 Arachis hypogaea HOM05D001355 ORTHO05D004435 2.6e-15 85.9 162 37.0
Manes.01G239900 Manihot esculenta HOM05D001355 ORTHO05D004435 2.6e-15 85.9 162 37.0
Eucgr.E01069 Eucalyptus grandis HOM05D001355 ORTHO05D004435 3.4e-15 85.5 162 37.0
HanXRQChr13g0426481 Helianthus annuus HOM05D001355 ORTHO05D004435 3.4e-15 85.5 162 37.0
Sed0007101 Sechium edule HOM05D001355 ORTHO05D004435 3.4e-15 85.5 161 36.6
TWI23G0366 Tripterygium wilfordii HOM05D001355 ORTHO05D004435 3.4e-15 85.5 162 37.7
CSS0001663 Camellia sinensis var. sinensis HOM05D001355 ORTHO05D004435 5.8e-15 84.7 162 37.0
ECA247G2213 Erigeron canadensis HOM05D001355 ORTHO05D004435 5.8e-15 84.7 162 37.0
QL08p047239 Quercus lobata HOM05D001355 ORTHO05D004435 5.8e-15 84.7 162 36.4
THA.LOC104801350 Tarenaya hassleriana HOM05D001355 ORTHO05D004435 5.8e-15 84.7 161 37.3
THA.LOC104825902 Tarenaya hassleriana HOM05D001355 ORTHO05D004435 5.8e-15 84.7 161 37.3
Haze_15734 Corylus avellana HOM05D001355 ORTHO05D004435 7.6e-15 84.3 162 35.8
ATR0743G158 Amborella trichopoda HOM05D001355 ORTHO05D004435 9.9e-15 84.0 161 37.9
EL10Ac3g06767 Beta vulgaris HOM05D001355 ORTHO05D004435 9.9e-15 84.0 161 37.3
CAN.G1591.4 Capsicum annuum HOM05D001355 ORTHO05D004435 9.9e-15 84.0 162 35.8
Os04g0119400 Oryza sativa ssp. japonica HOM05D001355 ORTHO05D004435 9.9e-15 84.0 164 36.0
unitig_21.g20446 Utricularia gibba HOM05D001355 ORTHO05D004435 9.9e-15 84.0 161 36.0
SMO118G0177 Selaginella moellendorffii HOM05D001355 ORTHO05D004435 1.3e-14 83.6 162 35.2
TWI59G1435 Tripterygium wilfordii HOM05D001355 ORTHO05D004435 1.3e-14 83.6 162 36.4
CANSAT56G2429 Cannabis sativa HOM05D001355 ORTHO05D004435 1.7e-14 83.2 162 35.8
CARHR001370 Cardamine hirsuta HOM05D001355 ORTHO05D004435 1.7e-14 83.2 161 36.0
Gorai.008G130900 Gossypium raimondii HOM05D001355 ORTHO05D004435 1.7e-14 83.2 162 37.0
Atru.chr9.1849 Acer truncatum HOM05D001355 ORTHO05D004435 2.2e-14 82.8 162 36.4
AagrBONN_evm.TU.Sc2ySwM_368.305 Anthoceros agrestis HOM05D001355 ORTHO05D004435 2.2e-14 82.8 162 35.8
CDE08G0646 Ceratophyllum demersum HOM05D001355 ORTHO05D004435 2.2e-14 82.8 162 37.7
Mapoly0005s0206 Marchantia polymorpha HOM05D001355 ORTHO05D004435 2.2e-14 82.8 162 34.0
AagrBONN_evm.TU.Sc2ySwM_368.294 Anthoceros agrestis HOM05D001355 ORTHO05D004435 2.9e-14 82.4 162 35.2
AL1G11430 Arabidopsis lyrata HOM05D001355 ORTHO05D004435 2.9e-14 82.4 157 35.0
TAR374G0567 Trochodendron aralioides HOM05D001355 ORTHO05D004435 2.9e-14 82.4 162 35.8
SEGI_07156 Sequoiadendron giganteum HOM05D001355 ORTHO05D004435 3.8e-14 82.0 162 35.8
AT1G01090 Arabidopsis thaliana HOM05D001355 ORTHO05D004435 4.9e-14 81.6 157 35.0
CDE02G4262 Ceratophyllum demersum HOM05D001355 ORTHO05D004435 4.9e-14 81.6 162 35.8
Gohir.A12G116700 Gossypium hirsutum HOM05D001355 ORTHO05D004435 4.9e-14 81.6 162 36.4
MSTRG.4362 Avicennia marina HOM05D001355 ORTHO05D004435 6.4e-14 81.3 161 36.0
C05p00840 Brassica napus HOM05D001355 ORTHO05D004435 6.4e-14 81.3 157 34.4
BolC5t28867H Brassica oleracea HOM05D001355 ORTHO05D004435 6.4e-14 81.3 157 34.4
BolC8t52861H Brassica oleracea HOM05D001355 ORTHO05D004435 6.4e-14 81.3 157 34.4
BraA10t42356Z Brassica rapa HOM05D001355 ORTHO05D004435 6.4e-14 81.3 157 34.4
Gohir.D12G120200 Gossypium hirsutum HOM05D001355 ORTHO05D004435 6.4e-14 81.3 162 36.4
Lalb_Chr10g0100881 Lupinus albus HOM05D001355 ORTHO05D004435 6.4e-14 81.3 164 35.4
TWI14G0894 Tripterygium wilfordii HOM05D001355 ORTHO05D004435 6.4e-14 81.3 162 35.8
vmacro12643 Vaccinium macrocarpon HOM05D001355 ORTHO05D004435 6.4e-14 81.3 162 34.6
BcaB03g13555 Brassica carinata HOM05D001355 ORTHO05D010028 8.4e-14 80.9 157 34.4
BcaC07g42362 Brassica carinata HOM05D001355 ORTHO05D004435 8.4e-14 80.9 157 34.4
BcaC07g42365 Brassica carinata HOM05D001355 ORTHO05D004435 8.4e-14 80.9 157 34.4
BcaC07g42368 Brassica carinata HOM05D001355 ORTHO05D004435 8.4e-14 80.9 157 34.4
A09p68890 Brassica napus HOM05D001355 ORTHO05D004435 8.4e-14 80.9 157 34.4
A10p00800 Brassica napus HOM05D001355 ORTHO05D004435 8.4e-14 80.9 157 34.4
C08p53460 Brassica napus HOM05D001355 ORTHO05D004435 8.4e-14 80.9 157 34.4
BraA09t42229Z Brassica rapa HOM05D001355 ORTHO05D004435 8.4e-14 80.9 157 34.4
Carub.0001s0113 Capsella rubella HOM05D001355 ORTHO05D004435 8.4e-14 80.9 157 35.7
Thhalv10007695m.g Eutrema salsugineum HOM05D001355 ORTHO05D004435 8.4e-14 80.9 157 35.7
Gorai.008G208500 Gossypium raimondii HOM05D001355 ORTHO05D004435 8.4e-14 80.9 162 35.8
ATR0304G006 Amborella trichopoda HOM05D001355 ORTHO05D019558 1.1e-13 80.5 161 36.6
Sc01g0002190 Simmondsia chinensis HOM05D001355 ORTHO05D004435 1.1e-13 80.5 161 36.6
Aa31LG1G10460 Aethionema arabicum HOM05D001355 ORTHO05D010028 1.4e-13 80.1 157 35.0
BcaC07g42372 Brassica carinata HOM05D001355 ORTHO05D004435 1.4e-13 80.1 157 35.0
Gohir.D12G193500 Gossypium hirsutum HOM05D001355 ORTHO05D019558 1.4e-13 80.1 162 35.8
HPP92_021520 Vanilla planifolia HOM05D001355 ORTHO05D004435 1.4e-13 80.1 162 35.2
Sp1g01190 Schrenkiella parvula HOM05D001355 ORTHO05D004435 1.9e-13 79.7 157 35.0
AUR62016854 Chenopodium quinoa HOM05D001355 ORTHO05D004435 3.2e-13 79.0 161 36.0
Gohir.A12G191500 Gossypium hirsutum HOM05D001355 ORTHO05D004435 5.5e-13 78.2 162 35.2
HPP92_021499 Vanilla planifolia HOM05D001355 ORTHO05D004435 1.2e-12 77.0 162 34.0
Aqoxy5G04344 Aquilegia oxysepala HOM05D001355 ORTHO05D004435 6.0e-12 74.7 161 35.4
CDE08G0084 Ceratophyllum demersum HOM05D001355 ORTHO05D004435 6.0e-12 74.7 162 34.0
Pp3c15_8520 Physcomitrium patens HOM05D001355 ORTHO05D004435 1.5e-10 70.1 162 32.7
Pp3c9_5460 Physcomitrium patens HOM05D001355 ORTHO05D004435 1.5e-10 70.1 162 32.7
Pp3c9_5550 Physcomitrium patens HOM05D001355 ORTHO05D004435 1.5e-10 70.1 162 32.7
Oeu043195.1 Olea europaea HOM05D001355 ORTHO05D004435 1.3e-09 67.0 89 42.7
Medtr7g118200 Medicago truncatula HOM05D001355 ORTHO05D004435 4.8e-09 65.1 59 49.2
Oeu028218.1 Olea europaea HOM05D001355 ORTHO05D004435 4.8e-09 65.1 89 44.9
Lj9A607T80 Lonicera japonica HOM05D001355 ORTHO05D048455 4.0e-08 62.0 94 40.4
arahy.Tifrunner.gnm1.ann1.YN16U1 Arachis hypogaea HOM05D002391 ORTHO05D003966 1.5e-07 60.1 33 81.8
Cre02.g099850 Chlamydomonas reinhardtii HOM05D001355 ORTHO05D004435 1.5e-07 60.1 170 32.4
arahy.Tifrunner.gnm1.ann1.LI6EZ2 Arachis hypogaea HOM05D001355 ORTHO05D004435 2.0e-07 59.7 46 58.7
BcaC07g42249 Brassica carinata HOM05D001355 ORTHO05D004435 2.6e-07 59.3 41 61.0
BcaC07g42258 Brassica carinata HOM05D001355 ORTHO05D004435 2.6e-07 59.3 41 61.0
C08p52820 Brassica napus HOM05D001355 ORTHO05D004435 2.6e-07 59.3 41 61.0
Lsat_1_v5_gn_8_101580 Lactuca sativa HOM05D001355 ORTHO05D004052 3.4e-07 58.9 94 39.4
arahy.Tifrunner.gnm1.ann1.6IHK1L Arachis hypogaea HOM05D001355 ORTHO05D004435 2.2e-06 56.2 46 54.3
arahy.Tifrunner.gnm1.ann1.L5PSIR Arachis hypogaea HOM05D001355 ORTHO05D004435 2.9e-06 55.8 46 54.3


User provided reference genes

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