Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.T5CB16 Arachis hypogaea HOM05D004759 ORTHO05D005722 1.5e-104 382.9 198 100.0
arahy.Tifrunner.gnm1.ann1.B05S7J Arachis hypogaea HOM05D004759 ORTHO05D005722 6.2e-98 360.9 193 96.9
arahy.Tifrunner.gnm1.ann1.8G8R7R Arachis hypogaea HOM05D004759 ORTHO05D005722 8.9e-97 357.1 193 96.4
arahy.Tifrunner.gnm1.ann1.R4GM9V Arachis hypogaea HOM05D004759 ORTHO05D005722 2.0e-80 302.8 196 82.7
arahy.Tifrunner.gnm1.ann1.ZR7FTB Arachis hypogaea HOM05D004759 ORTHO05D005722 1.3e-79 300.1 193 85.0
Glyma.12G023500 Glycine max HOM05D004759 ORTHO05D005722 3.3e-75 285.4 193 78.8
Glyma.11G097500 Glycine max HOM05D004759 ORTHO05D005722 2.1e-74 282.7 193 78.2
TPR.G17153 Trifolium pratense HOM05D004759 ORTHO05D005722 6.2e-74 281.2 191 77.5
Medtr4g075610 Medicago truncatula HOM05D004759 ORTHO05D005722 4.0e-73 278.5 191 75.9
Lalb_Chr19g0139561 Lupinus albus HOM05D004759 ORTHO05D005722 5.3e-73 278.1 191 73.8
Lj1g0004015 Lotus japonicus HOM05D004759 ORTHO05D005722 9.0e-73 277.3 191 77.0
VMungo1127G1183 Vigna mungo HOM05D004759 ORTHO05D005722 9.0e-73 277.3 191 77.0
Phvul.011G025600 Phaseolus vulgaris HOM05D004759 ORTHO05D005722 3.4e-72 275.4 191 77.0
Glyma.06G005900 Glycine max HOM05D004759 ORTHO05D005722 4.9e-71 271.6 191 75.9
Phvul.009G000900 Phaseolus vulgaris HOM05D004759 ORTHO05D005722 2.4e-70 269.2 191 75.9
Sabra04G0112000 Salix brachista HOM05D004759 ORTHO05D005722 4.2e-70 268.5 187 74.9
Psat7g178120 Pisum sativum HOM05D004759 ORTHO05D005722 1.0e-68 263.8 191 72.3
CiPaw.06G125800 Carya illinoinensis HOM05D004759 ORTHO05D005722 6.7e-68 261.2 187 71.1
Potri.009G127800 Populus trichocarpa HOM05D004759 ORTHO05D005722 6.7e-68 261.2 187 71.7
Cfa005166 Carpinus fangiana HOM05D004759 ORTHO05D005722 1.1e-67 260.4 187 71.7
Ca_18993_v3 Cicer arietinum L. HOM05D004759 ORTHO05D005722 1.1e-67 260.4 192 72.4
QL11p047309 Quercus lobata HOM05D004759 ORTHO05D005722 1.5e-67 260.0 187 71.1
Duzib248G0603 Durio zibethinus HOM05D004759 ORTHO05D005722 1.9e-67 259.6 187 73.3
Glyma.04G006200 Glycine max HOM05D004759 ORTHO05D005722 7.4e-67 257.7 191 74.3
Potri.004G166900 Populus trichocarpa HOM05D004759 ORTHO05D005722 7.4e-67 257.7 181 74.0
VMungo1309G1106 Vigna mungo HOM05D004759 ORTHO05D005722 4.8e-66 255.0 191 72.8
Manes.04G079000 Manihot esculenta HOM05D004759 ORTHO05D005722 8.1e-66 254.2 187 68.4
CANSAT25G1906 Cannabis sativa HOM05D004759 ORTHO05D005722 1.1e-65 253.8 185 69.7
TAR376G0227 Trochodendron aralioides HOM05D004759 ORTHO05D005722 3.1e-65 252.3 188 68.6
Duzib132G0429 Durio zibethinus HOM05D004759 ORTHO05D005722 4.0e-65 251.9 187 69.5
CiPaw.05G076100 Carya illinoinensis HOM05D004759 ORTHO05D005722 5.3e-65 251.5 187 68.4
Gohir.A03G202700 Gossypium hirsutum HOM05D004759 ORTHO05D005722 5.3e-65 251.5 187 69.0
Prupe.8G158800 Prunus persica HOM05D004759 ORTHO05D005722 5.3e-65 251.5 187 68.4
Thecc.02G068600 Theobroma cacao HOM05D004759 ORTHO05D005722 5.3e-65 251.5 187 69.0
RcHm_v2.0_Chr6g0245891 Rosa chinensis HOM05D004759 ORTHO05D005722 1.2e-64 250.4 188 68.6
COL.COLO4_17240 Corchorus olitorius HOM05D004759 ORTHO05D005722 1.5e-64 250.0 188 69.7
FAN15G1889 Fragaria x ananassa HOM05D004759 ORTHO05D005722 1.5e-64 250.0 184 69.0
FAN24G2027 Fragaria x ananassa HOM05D004759 ORTHO05D005722 1.5e-64 250.0 184 69.0
Gorai.005G251800 Gossypium raimondii HOM05D004759 ORTHO05D005722 2.0e-64 249.6 187 69.0
Lj5A186G40 Lonicera japonica HOM05D004759 ORTHO05D005722 3.4e-64 248.8 186 65.6
FvH4_2g02210 Fragaria vesca HOM05D004759 ORTHO05D005722 5.8e-64 248.1 184 68.5
Sabra09G0098000 Salix brachista HOM05D004759 ORTHO05D005722 1.0e-63 247.3 187 69.0
MD10G1116400 Malus domestica HOM05D004759 ORTHO05D005722 1.3e-63 246.9 187 68.4
FAN27G2697 Fragaria x ananassa HOM05D004759 ORTHO05D005722 1.7e-63 246.5 186 68.3
Atru.chr5.3204 Acer truncatum HOM05D004759 ORTHO05D005722 2.2e-63 246.1 189 66.7
Ciclev10028685m.g Citrus clementina HOM05D004759 ORTHO05D005722 2.9e-63 245.7 188 67.0
Gohir.D02G224000 Gossypium hirsutum HOM05D004759 ORTHO05D005722 3.8e-63 245.4 187 66.8
PGSC0003DMG400001638 Solanum tuberosum HOM05D004759 ORTHO05D005722 4.9e-63 245.0 185 68.1
TWI79G0483 Tripterygium wilfordii HOM05D004759 ORTHO05D005722 4.9e-63 245.0 187 66.8
MD05G1114400 Malus domestica HOM05D004759 ORTHO05D005722 6.5e-63 244.6 186 67.7
Eucgr.I01368 Eucalyptus grandis HOM05D004759 ORTHO05D005722 1.1e-62 243.8 186 67.7
PGR042G1303 Punica granatum HOM05D004759 ORTHO05D005722 1.1e-62 243.8 187 67.4
Solyc01g111040.4 Solanum lycopersicum HOM05D004759 ORTHO05D005722 2.5e-62 242.7 185 67.6
CAN.G588.16 Capsicum annuum HOM05D004759 ORTHO05D005722 3.2e-62 242.3 185 67.6
Duzib052G1250 Durio zibethinus HOM05D004759 ORTHO05D005722 3.2e-62 242.3 187 69.0
FAN20G1238 Fragaria x ananassa HOM05D004759 ORTHO05D005722 3.2e-62 242.3 182 68.1
Sopen01g053100 Solanum pennellii HOM05D004759 ORTHO05D005722 7.1e-62 241.1 185 67.6
Ca_15318_v3 Cicer arietinum L. HOM05D004759 ORTHO05D005722 1.2e-61 240.4 184 71.2
Medtr3g117680 Medicago truncatula HOM05D004759 ORTHO05D005722 1.2e-61 240.4 188 69.1
ClCG02G004370 Citrullus lanatus HOM05D004759 ORTHO05D005722 3.5e-61 238.8 188 65.4
GSVIVG01024116001 Vitis vinifera HOM05D004759 ORTHO05D005722 3.5e-61 238.8 187 66.8
Psat5g003440 Pisum sativum HOM05D004759 ORTHO05D005722 4.6e-61 238.4 188 69.7
Manes.11G078000 Manihot esculenta HOM05D004759 ORTHO05D005722 6.0e-61 238.0 182 65.9
Rhsim11G0187000 Rhododendron simsii HOM05D004759 ORTHO05D005722 1.0e-60 237.3 188 64.4
Peaxi162Scf00362g01041 Petunia axillaris HOM05D004759 ORTHO05D005722 3.9e-60 235.3 185 65.9
Hma1.2p1_0032F.1_g019720 Hydrangea macrophylla HOM05D004759 ORTHO05D005722 5.1e-60 235.0 187 68.4
Gorai.008G032900 Gossypium raimondii HOM05D004759 ORTHO05D005722 1.1e-59 233.8 188 68.1
CsaV3_7G000740 Cucumis sativus L. HOM05D004759 ORTHO05D005722 1.9e-59 233.0 186 63.4
TWI31G1308 Tripterygium wilfordii HOM05D004759 ORTHO05D005722 2.5e-59 232.6 187 63.1
TPR.G38567 Trifolium pratense HOM05D004759 ORTHO05D005722 3.3e-59 232.3 188 67.6
Sed0015502 Sechium edule HOM05D004759 ORTHO05D005722 4.3e-59 231.9 188 64.4
Actinidia00585 Actinidia chinensis HOM05D004759 ORTHO05D005722 5.7e-59 231.5 188 63.3
MELO3C013383.2 Cucumis melo HOM05D004759 ORTHO05D005722 7.4e-59 231.1 186 64.0
vmacro02240 Vaccinium macrocarpon HOM05D004759 ORTHO05D005722 1.6e-58 229.9 188 63.8
vmacro22691 Vaccinium macrocarpon HOM05D004759 ORTHO05D005722 1.6e-58 229.9 188 63.8
Gohir.D12G032200 Gossypium hirsutum HOM05D004759 ORTHO05D005722 6.3e-58 228.0 187 66.8
Nitab4.5_0000283g0200 Nicotiana tabacum HOM05D004759 ORTHO05D005722 1.1e-57 227.3 185 63.8
Gohir.A12G040100 Gossypium hirsutum HOM05D004759 ORTHO05D005722 2.4e-57 226.1 188 66.5
Cc02_g16670 Coffea canephora HOM05D004759 ORTHO05D005722 4.1e-57 225.3 183 63.4
Actinidia20479 Actinidia chinensis HOM05D004759 ORTHO05D005722 9.0e-57 224.2 188 61.2
CARHR247920 Cardamine hirsuta HOM05D004759 ORTHO05D005722 9.0e-57 224.2 190 63.7
AL7G10680 Arabidopsis lyrata HOM05D004759 ORTHO05D005722 1.2e-56 223.8 190 63.2
Carub.0007s0066 Capsella rubella HOM05D004759 ORTHO05D005722 1.5e-56 223.4 189 64.0
AUR62013108 Chenopodium quinoa HOM05D004759 ORTHO05D005722 2.6e-56 222.6 188 62.2
MBI05_g15352_MAGBIO Magnolia biondii HOM05D004759 ORTHO05D005722 4.5e-56 221.9 198 59.6
ECA233G0594 Erigeron canadensis HOM05D004759 ORTHO05D005722 5.9e-56 221.5 187 63.1
Haze_02210 Corylus avellana HOM05D004759 ORTHO05D005722 7.6e-56 221.1 183 66.1
THA.LOC104824783 Tarenaya hassleriana HOM05D004759 ORTHO05D005722 7.6e-56 221.1 182 65.4
C07p63570 Brassica napus HOM05D004759 ORTHO05D005722 3.8e-55 218.8 185 63.2
BolC7t46770H Brassica oleracea HOM05D004759 ORTHO05D005722 3.8e-55 218.8 185 63.2
HanXRQChr17g0555191 Helianthus annuus HOM05D004759 ORTHO05D005722 3.8e-55 218.8 187 62.0
Sed0015287 Sechium edule HOM05D004759 ORTHO05D005722 3.8e-55 218.8 186 61.3
PSO170G3415 Papaver somniferum HOM05D004759 ORTHO05D005722 5.0e-55 218.4 182 61.0
EL10Ac9g21461 Beta vulgaris HOM05D004759 ORTHO05D005722 6.5e-55 218.0 188 61.2
Sc18g0006740 Simmondsia chinensis HOM05D004759 ORTHO05D005722 6.5e-55 218.0 184 61.4
A06p48900 Brassica napus HOM05D004759 ORTHO05D005722 8.4e-55 217.6 182 63.7
BraA06t27758Z Brassica rapa HOM05D004759 ORTHO05D005722 8.4e-55 217.6 182 63.7
AT4G38810 Arabidopsis thaliana HOM05D004759 ORTHO05D005722 1.9e-54 216.5 187 62.0
BcaNung01966 Brassica carinata HOM05D004759 ORTHO05D005722 1.9e-54 216.5 190 61.1
SGA_v2.0_scaffold32G13244 Striga asiatica HOM05D004759 ORTHO05D005722 1.9e-54 216.5 187 62.0
AUR62010113 Chenopodium quinoa HOM05D004759 ORTHO05D005722 2.5e-54 216.1 185 62.2
PSO700G0005 Papaver somniferum HOM05D004759 ORTHO05D005722 2.5e-54 216.1 187 59.9
Thhalv10025463m.g Eutrema salsugineum HOM05D004759 ORTHO05D005722 4.2e-54 215.3 185 62.7
Lsat_1_v5_gn_8_126780 Lactuca sativa HOM05D004759 ORTHO05D005722 5.5e-54 214.9 185 60.5
Sp7g37010 Schrenkiella parvula HOM05D004759 ORTHO05D005722 2.7e-53 212.6 190 60.0
Aa31LG6G16400 Aethionema arabicum HOM05D004759 ORTHO05D005722 4.6e-53 211.8 182 61.0
SalBow6G6339 Salvia bowleyana HOM05D004759 ORTHO05D005722 7.9e-53 211.1 187 58.8
Ah.01g009490 Amaranthus hybridus HOM05D004759 ORTHO05D005722 1.0e-52 210.7 190 58.9
Migut.B00161 Erythranthe guttata HOM05D004759 ORTHO05D005722 3.9e-52 208.8 187 58.8
TAR628G0309 Trochodendron aralioides HOM05D004759 ORTHO05D005722 1.1e-51 207.2 182 63.2
MSTRG.27666 Avicennia marina HOM05D004759 ORTHO05D005722 4.8e-50 201.8 187 57.2
Hund00052 Selenicereus undatus HOM05D004759 ORTHO05D005722 8.2e-50 201.1 204 53.4
Sed0012827 Sechium edule HOM05D000600 ORTHO05D000432 4.5e-48 195.3 172 59.9
MSTRG.5434 Avicennia marina HOM05D004759 ORTHO05D005722 3.8e-47 192.2 179 56.4
Aqoxy5G01775 Aquilegia oxysepala HOM05D004759 ORTHO05D005722 8.5e-47 191.0 190 55.8
MSTRG.16864 Avicennia marina HOM05D004759 ORTHO05D005722 2.5e-46 189.5 189 53.4
Hund06394 Selenicereus undatus HOM05D004759 ORTHO05D005722 2.5e-46 189.5 188 53.7
Os10g0177200 Oryza sativa ssp. japonica HOM05D004759 ORTHO05D005722 2.7e-45 186.0 186 50.0
SHI05655 Sapria himalayana HOM05D004759 ORTHO05D005722 1.4e-44 183.7 211 54.0
Zm00001eb224230 Zea mays HOM05D004759 ORTHO05D005722 3.9e-44 182.2 195 50.3
Oeu055645.1 Olea europaea HOM05D004759 ORTHO05D005722 2.0e-43 179.9 185 52.4
ATR0481G015 Amborella trichopoda HOM05D004759 ORTHO05D005722 5.7e-43 178.3 175 52.0
Oeu002958.2 Olea europaea HOM05D004759 ORTHO05D005722 4.1e-41 172.2 185 50.8
CDE02G2774 Ceratophyllum demersum HOM05D004759 ORTHO05D005722 6.9e-41 171.4 165 55.2
Nn5g30165 Nelumbo nucifera HOM05D004759 ORTHO05D005722 1.3e-39 167.2 145 55.9
SEGI_06358 Sequoiadendron giganteum HOM05D004759 ORTHO05D005722 4.2e-38 162.2 175 50.3
unitig_21.g20808 Utricularia gibba HOM05D004759 ORTHO05D005722 1.2e-37 160.6 187 49.7
Os03g0250000 Oryza sativa ssp. japonica HOM05D004759 ORTHO05D005722 1.6e-37 160.2 183 48.6
Nitab4.5_0000980g0350 Nicotiana tabacum HOM05D004759 ORTHO05D005722 2.1e-37 159.8 185 51.9
Cc02_g16650 Coffea canephora HOM05D004759 ORTHO05D005722 2.7e-37 159.5 140 60.0
SEGI_27774 Sequoiadendron giganteum HOM05D004759 ORTHO05D005722 2.7e-37 159.5 174 50.0
unitig_899.g15603 Utricularia gibba HOM05D004759 ORTHO05D005722 4.4e-35 152.1 186 43.0
Zm00001eb010730 Zea mays HOM05D004759 ORTHO05D005722 4.5e-32 142.1 181 46.4
HPP92_007135 Vanilla planifolia HOM05D004759 ORTHO05D005722 2.9e-31 139.4 187 41.7
Nn1g05877 Nelumbo nucifera HOM05D004759 ORTHO05D005722 3.8e-31 139.0 188 47.3
Mapoly0103s0051 Marchantia polymorpha HOM05D004759 ORTHO05D005722 2.7e-29 132.9 149 40.9
Ciclev10030375m.g Citrus clementina HOM05D004759 ORTHO05D005722 4.7e-29 132.1 134 50.7
HPP92_003533 Vanilla planifolia HOM05D004759 ORTHO05D005722 4.4e-27 125.6 190 44.2
SEGI_21972 Sequoiadendron giganteum HOM05D004759 ORTHO05D005722 1.7e-26 123.6 173 38.7
DCAR_026360 Daucus carota HOM05D004759 ORTHO05D005722 1.6e-24 117.1 98 60.2
SMO169G0202 Selaginella moellendorffii HOM05D004759 ORTHO05D005722 5.0e-23 112.1 172 39.5
PSO541G2336 Papaver somniferum HOM05D004759 ORTHO05D005722 1.5e-19 100.5 190 36.3
Dinv41981 Davidia involucrata HOM05D004759 ORTHO05D005722 2.0e-19 100.1 82 67.1
PSO675G1610 Papaver somniferum HOM05D004759 ORTHO05D005722 2.6e-19 99.8 189 36.5
SEGI_16256 Sequoiadendron giganteum HOM05D004759 ORTHO05D005722 2.8e-18 96.3 136 39.0
Cpa.g.sc37.205 Carica papaya HOM05D004759 ORTHO05D005722 3.7e-18 95.9 198 33.8
Pp3c5_21520 Physcomitrium patens HOM05D004759 ORTHO05D005722 3.8e-15 85.9 94 43.6
Oeu046121.1 Olea europaea HOM05D004759 ORTHO05D005722 8.8e-12 74.7 65 61.5
Potri.013G040500 Populus trichocarpa HOM05D006821 ORTHO05D008740 5.9e-08 62.0 138 29.0
Gohir.A13G104500 Gossypium hirsutum HOM05D006821 ORTHO05D008740 2.3e-07 60.1 156 23.7
Gohir.D13G107900 Gossypium hirsutum HOM05D006821 ORTHO05D008740 8.6e-07 58.2 156 23.7
SEGI_00561 Sequoiadendron giganteum HOM05D006821 ORTHO05D008740 8.6e-07 58.2 158 24.7
Gorai.013G120900 Gossypium raimondii HOM05D006821 ORTHO05D008740 1.1e-06 57.8 156 23.7
Potri.005G052900 Populus trichocarpa HOM05D006821 ORTHO05D008740 5.6e-06 55.5 138 26.1


User provided reference genes

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