Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.T5288F Arachis hypogaea HOM05D000070 ORTHO05D006683 2.4e-298 1028.1 519 100.0
arahy.Tifrunner.gnm1.ann1.48N9B9 Arachis hypogaea HOM05D000070 ORTHO05D006683 1.3e-264 916.0 473 98.3
Glyma.13G273300 Glycine max HOM05D000070 ORTHO05D006683 5.0e-131 472.2 500 55.8
Lalb_Chr20g0109491 Lupinus albus HOM05D000070 ORTHO05D006683 1.8e-128 463.8 489 56.4
Glyma.12G227000 Glycine max HOM05D000070 ORTHO05D006683 1.1e-127 461.1 497 55.9
Medtr2g078630 Medicago truncatula HOM05D000070 ORTHO05D006683 3.5e-124 449.5 505 54.1
TPR.G7945 Trifolium pratense HOM05D000070 ORTHO05D006683 2.9e-123 446.4 493 53.8
Lalb_Chr25g0286211 Lupinus albus HOM05D000070 ORTHO05D006683 2.1e-121 440.3 481 55.7
Lj3g0013945 Lotus japonicus HOM05D000070 ORTHO05D006683 1.1e-114 417.9 516 51.4
Ca_03533_v3 Cicer arietinum L. HOM05D000070 ORTHO05D006683 2.7e-113 413.3 496 51.2
VMungo1080G0328 Vigna mungo HOM05D000070 ORTHO05D006683 2.6e-111 406.8 502 50.6
Phvul.005G069600 Phaseolus vulgaris HOM05D000070 ORTHO05D006683 3.7e-110 402.9 504 50.0
Psat5g241520 Pisum sativum HOM05D000070 ORTHO05D006683 1.4e-109 401.0 493 50.1
CiPaw.11G166700 Carya illinoinensis HOM05D000070 ORTHO05D006683 2.7e-84 317.0 507 40.6
Haze_09387 Corylus avellana HOM05D000070 ORTHO05D006683 3.3e-82 310.1 498 42.0
Cfa020618 Carpinus fangiana HOM05D000070 ORTHO05D006683 3.6e-81 306.6 501 41.9
Sabra11G0127000 Salix brachista HOM05D000070 ORTHO05D006683 1.1e-80 305.1 498 39.8
Potri.011G141400 Populus trichocarpa HOM05D000070 ORTHO05D006683 2.3e-80 303.9 498 40.2
QL08p023642 Quercus lobata HOM05D000070 ORTHO05D006683 1.9e-77 294.3 498 40.6
MD11G1256000 Malus domestica HOM05D000070 ORTHO05D006683 8.9e-72 275.4 495 39.6
TWI38G2035 Tripterygium wilfordii HOM05D000070 ORTHO05D006683 1.7e-70 271.2 510 39.2
TAR624G0583 Trochodendron aralioides HOM05D000070 ORTHO05D006683 3.5e-68 263.5 521 35.3
RcHm_v2.0_Chr5g0032311 Rosa chinensis HOM05D000070 ORTHO05D006683 1.0e-67 261.9 523 38.0
MELO3C019399.2 Cucumis melo HOM05D000070 ORTHO05D006683 3.3e-66 256.9 498 37.1
Manes.15G090100 Manihot esculenta HOM05D000070 ORTHO05D006683 4.3e-66 256.5 498 38.2
Atru.chr2.2387 Acer truncatum HOM05D000070 ORTHO05D006683 2.8e-65 253.8 546 36.3
Nn1g06393 Nelumbo nucifera HOM05D000070 ORTHO05D006683 2.8e-65 253.8 511 36.4
Duzib170G1082 Durio zibethinus HOM05D000070 ORTHO05D006683 2.4e-64 250.8 581 34.6
Actinidia35238 Actinidia chinensis HOM05D000070 ORTHO05D006683 5.3e-64 249.6 505 34.9
Thecc.07G098900 Theobroma cacao HOM05D000070 ORTHO05D006683 9.0e-64 248.8 582 34.0
Ciclev10007229m.g Citrus clementina HOM05D000070 ORTHO05D006683 7.6e-63 245.7 495 37.0
GSVIVG01014274001 Vitis vinifera HOM05D000070 ORTHO05D006683 1.7e-62 244.6 478 39.7
Duzib213G1081 Durio zibethinus HOM05D000070 ORTHO05D006683 2.9e-62 243.8 575 33.7
Aqoxy1G02305 Aquilegia oxysepala HOM05D000070 ORTHO05D006683 3.8e-62 243.4 511 35.4
Cpa.g.sc80.3 Carica papaya HOM05D006724 ORTHO05D006683 3.8e-62 243.4 492 37.2
CsaV3_3G019540 Cucumis sativus L. HOM05D000070 ORTHO05D006683 1.9e-61 241.1 499 35.1
Sed0024008 Sechium edule HOM05D000070 ORTHO05D006683 3.2e-61 240.4 488 37.7
FAN21G0502 Fragaria x ananassa HOM05D000070 ORTHO05D006683 7.1e-61 239.2 576 34.9
Eucgr.F01177 Eucalyptus grandis HOM05D000070 ORTHO05D006683 9.3e-61 238.8 514 35.2
FAN25G1528 Fragaria x ananassa HOM05D000070 ORTHO05D006683 1.2e-60 238.4 583 34.6
ClCG05G009240 Citrullus lanatus HOM05D000070 ORTHO05D006683 2.7e-60 237.3 501 36.7
FvH4_3g19240 Fragaria vesca HOM05D000070 ORTHO05D006683 2.7e-60 237.3 571 34.9
FAN11G2237 Fragaria x ananassa HOM05D000070 ORTHO05D006683 6.0e-60 236.1 574 34.7
Cc05_g11650 Coffea canephora HOM05D000070 ORTHO05D006683 2.3e-59 234.2 495 35.6
CANSAT35G1857 Cannabis sativa HOM05D000070 ORTHO05D006683 5.1e-59 233.0 480 36.5
PGR083G0044 Punica granatum HOM05D000070 ORTHO05D006683 1.1e-58 231.9 483 36.4
Gohir.A01G060800 Gossypium hirsutum HOM05D000070 ORTHO05D006683 1.5e-58 231.5 581 33.4
Gohir.D01G047300 Gossypium hirsutum HOM05D000070 ORTHO05D006683 7.4e-58 229.2 584 32.5
FAN16G3451 Fragaria x ananassa HOM05D000070 ORTHO05D006683 9.6e-58 228.8 570 33.9
Gorai.002G066800 Gossypium raimondii HOM05D000070 ORTHO05D006683 1.6e-57 228.0 582 32.3
vmacro09518 Vaccinium macrocarpon HOM05D000070 ORTHO05D006683 1.6e-57 228.0 515 35.5
C03p47510 Brassica napus HOM05D000070 ORTHO05D006683 4.8e-57 226.5 483 33.5
BolC3t17015H Brassica oleracea HOM05D000070 ORTHO05D006683 4.8e-57 226.5 483 33.5
PSO541G4369 Papaver somniferum HOM05D000070 ORTHO05D006683 6.2e-57 226.1 511 35.2
Sp3g13330 Schrenkiella parvula HOM05D000070 ORTHO05D006683 6.2e-57 226.1 500 32.6
Gorai.004G029700 Gossypium raimondii HOM05D000070 ORTHO05D006683 2.0e-55 221.1 570 32.3
Gohir.D08G032300 Gossypium hirsutum HOM05D000070 ORTHO05D006683 2.6e-55 220.7 570 31.9
CARHR090100 Cardamine hirsuta HOM05D000070 ORTHO05D006683 3.4e-55 220.3 502 32.7
Carub.0003s1477 Capsella rubella HOM05D000070 ORTHO05D006683 2.9e-54 217.2 492 32.9
BraA03t13065Z Brassica rapa HOM05D000070 ORTHO05D006683 8.4e-54 215.7 489 33.3
A03p39160 Brassica napus HOM05D000070 ORTHO05D006683 1.9e-53 214.5 489 33.1
Thhalv10019880m.g Eutrema salsugineum HOM05D000070 ORTHO05D006683 2.4e-53 214.2 497 33.4
Aa31LG8G2340 Aethionema arabicum HOM05D000070 ORTHO05D006683 4.2e-53 213.4 492 32.5
BcaC01g03897 Brassica carinata HOM05D000070 ORTHO05D006683 7.1e-53 212.6 484 32.9
AL3G27480 Arabidopsis lyrata HOM05D000070 ORTHO05D006683 1.6e-52 211.5 506 32.8
PGSC0003DMG400012401 Solanum tuberosum HOM05D000070 ORTHO05D006683 3.5e-52 210.3 500 33.4
THA.LOC104810458 Tarenaya hassleriana HOM05D000070 ORTHO05D006683 3.5e-52 210.3 563 32.0
CAN.G162.29 Capsicum annuum HOM05D000070 ORTHO05D006683 4.6e-52 209.9 499 32.9
EL10Ac4g08256 Beta vulgaris HOM05D000070 ORTHO05D006683 7.9e-52 209.1 530 33.4
Sopen07g030990 Solanum pennellii HOM05D000070 ORTHO05D006683 2.3e-51 207.6 506 33.0
Solyc07g062770.2 Solanum lycopersicum HOM05D000070 ORTHO05D006683 3.9e-51 206.8 503 32.2
Peaxi162Scf00069g01833 Petunia axillaris HOM05D000070 ORTHO05D006683 6.7e-51 206.1 500 34.6
Dinv20211 Davidia involucrata HOM05D000070 ORTHO05D006683 3.3e-50 203.8 383 40.2
AT3G15120 Arabidopsis thaliana HOM05D000070 ORTHO05D006683 5.6e-50 203.0 496 31.9
Lj1A837G48 Lonicera japonica HOM05D000070 ORTHO05D006683 5.6e-50 203.0 476 34.2
ECA240G2408 Erigeron canadensis HOM05D000070 ORTHO05D006683 9.6e-50 202.2 474 34.0
CSS0012964 Camellia sinensis var. sinensis HOM05D000070 ORTHO05D006683 1.8e-48 198.0 400 38.8
CDE10G0809 Ceratophyllum demersum HOM05D000070 ORTHO05D006683 1.2e-47 195.3 486 31.7
AUR62036148 Chenopodium quinoa HOM05D000070 ORTHO05D006683 2.0e-47 194.5 550 30.7
Nitab4.5_0000246g0030 Nicotiana tabacum HOM05D000070 ORTHO05D006683 4.5e-47 193.4 485 32.2
Nitab4.5_0002019g0010 Nicotiana tabacum HOM05D000070 ORTHO05D006683 4.5e-47 193.4 486 32.3
AUR62019488 Chenopodium quinoa HOM05D000070 ORTHO05D006683 2.9e-46 190.7 551 32.1
Migut.H01962 Erythranthe guttata HOM05D000070 ORTHO05D006683 2.5e-45 187.6 490 31.6
SGA_v2.0_scaffold70G23693 Striga asiatica HOM05D000070 ORTHO05D006683 2.7e-44 184.1 498 31.9
MSTRG.14209 Avicennia marina HOM05D000070 ORTHO05D006683 3.0e-43 180.6 495 31.7
SalBow7G0119 Salvia bowleyana HOM05D000070 ORTHO05D006683 3.0e-43 180.6 495 32.1
Zm00001eb157300 Zea mays HOM05D000070 ORTHO05D006683 8.2e-41 172.6 504 29.6
HanXRQChr13g0391161 Helianthus annuus HOM05D000070 ORTHO05D006683 4.1e-40 170.2 479 30.9
Dinv14947 Davidia involucrata HOM05D000070 ORTHO05D006683 9.0e-40 169.1 446 32.5
Lsat_1_v5_gn_9_98220 Lactuca sativa HOM05D000070 ORTHO05D006683 1.0e-38 165.6 479 29.6
Os01g0668300 Oryza sativa ssp. japonica HOM05D000070 ORTHO05D006683 1.1e-37 162.2 503 28.6
DCAR_013128 Daucus carota HOM05D000070 ORTHO05D006683 2.1e-36 157.9 498 30.7
unitig_899.g15571 Utricularia gibba HOM05D000070 ORTHO05D006683 1.3e-35 155.2 476 30.0
Sc07g0002540 Simmondsia chinensis HOM05D000070 ORTHO05D006683 3.0e-35 154.1 106 67.9
HPP92_024566 Vanilla planifolia HOM05D000070 ORTHO05D006683 8.7e-35 152.5 462 27.9
ATR0602G265 Amborella trichopoda HOM05D000070 ORTHO05D006683 3.3e-34 150.6 488 29.5
CDE10G0784 Ceratophyllum demersum HOM05D000070 ORTHO05D006683 2.4e-32 144.4 128 58.6
Ah.06g184760 Amaranthus hybridus HOM05D000070 ORTHO05D006683 1.0e-30 139.0 129 55.8
Hma1.2p1_0416F.1_g148460 Hydrangea macrophylla HOM05D000070 ORTHO05D006683 1.0e-30 139.0 106 66.0
SHI21482 Sapria himalayana HOM05D000070 ORTHO05D006683 3.6e-28 130.6 108 58.3
TAR626G0446 Trochodendron aralioides HOM05D000070 ORTHO05D006683 3.0e-27 127.5 177 44.1
SEGI_00098 Sequoiadendron giganteum HOM05D000070 ORTHO05D006683 5.1e-27 126.7 379 29.8
Psat5g066840 Pisum sativum HOM05D000255 ORTHO05D006683 3.4e-23 114.0 240 38.8
ClCG04G000030 Citrullus lanatus HOM05D000070 ORTHO05D006683 4.5e-23 113.6 171 40.4
Gohir.A08G021424 Gossypium hirsutum HOM05D000070 ORTHO05D006683 2.8e-17 94.4 253 28.9
CsaV3_4G021830 Cucumis sativus L. HOM05D000070 ORTHO05D045030 2.4e-16 91.3 115 43.5
SHI21484 Sapria himalayana HOM05D000070 ORTHO05D006683 5.3e-16 90.1 230 32.2
Sed0002493 Sechium edule HOM05D000070 ORTHO05D006683 7.2e-13 79.7 75 52.0
Sed0011266 Sechium edule HOM05D000070 ORTHO05D045030 2.7e-12 77.8 75 50.7
AagrBONN_evm.TU.Sc2ySwM_368.1632 Anthoceros agrestis HOM05D000070 ORTHO05D006683 2.4e-08 64.7 97 30.9
Mapoly0043s0039 Marchantia polymorpha HOM05D036583 ORTHO05D006683 2.4e-08 64.7 93 33.3
Pp3c8_5410 Physcomitrium patens HOM05D000070 ORTHO05D006683 3.5e-07 60.8 368 23.6
Thecc.10G085500 Theobroma cacao HOM05D000651 ORTHO05D001126 8.5e-06 56.2 60 43.3


User provided reference genes

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