Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.SX4PQT Arachis hypogaea HOM05D004694 ORTHO05D006576 2.8e-171 605.1 292 100.0
arahy.Tifrunner.gnm1.ann1.U91AM5 Arachis hypogaea HOM05D004694 ORTHO05D006576 4.0e-170 601.3 292 99.3
arahy.Tifrunner.gnm1.ann1.C9ULKZ Arachis hypogaea HOM05D004694 ORTHO05D006576 8.9e-170 600.1 292 99.3
arahy.Tifrunner.gnm1.ann1.HVKI9W Arachis hypogaea HOM05D004694 ORTHO05D006576 8.9e-170 600.1 292 99.3
arahy.Tifrunner.gnm1.ann1.18QE6Y Arachis hypogaea HOM05D004694 ORTHO05D006576 2.0e-169 599.0 292 99.0
arahy.Tifrunner.gnm1.ann1.EW3HTN Arachis hypogaea HOM05D004694 ORTHO05D006576 4.9e-168 594.3 292 98.6
arahy.Tifrunner.gnm1.ann1.J1V7G3 Arachis hypogaea HOM05D004694 ORTHO05D006576 7.8e-166 587.0 292 96.9
MELO3C002350.2 Cucumis melo HOM05D004694 ORTHO05D006576 8.1e-155 550.4 292 89.0
CsaV3_1G009520 Cucumis sativus L. HOM05D004694 ORTHO05D006576 8.1e-155 550.4 292 89.0
Medtr8g028225 Medicago truncatula HOM05D004694 ORTHO05D006576 1.1e-154 550.1 292 89.4
ClCG03G003600 Citrullus lanatus HOM05D004694 ORTHO05D006576 1.5e-153 546.2 292 88.4
TPR.G21293 Trifolium pratense HOM05D004694 ORTHO05D006576 1.5e-153 546.2 292 88.4
Lalb_Chr07g0183271 Lupinus albus HOM05D004694 ORTHO05D006576 2.0e-153 545.8 292 87.7
Lj4g0028142 Lotus japonicus HOM05D004694 ORTHO05D006576 2.6e-153 545.4 292 89.0
Psat4g158240 Pisum sativum HOM05D004694 ORTHO05D006576 2.6e-153 545.4 292 88.7
Glyma.17G128000 Glycine max HOM05D004694 ORTHO05D006576 3.4e-153 545.0 292 87.7
CiPaw.11G010700 Carya illinoinensis HOM05D004694 ORTHO05D006576 7.6e-153 543.9 292 88.4
Thecc.03G124900 Theobroma cacao HOM05D004694 ORTHO05D006576 1.7e-152 542.7 292 88.4
COL.COLO4_28061 Corchorus olitorius HOM05D004694 ORTHO05D006576 4.9e-152 541.2 292 88.0
HanXRQChr05g0154041 Helianthus annuus HOM05D004694 ORTHO05D006576 1.4e-151 539.7 292 87.3
FvH4_5g07710 Fragaria vesca HOM05D004694 ORTHO05D006576 2.4e-151 538.9 292 86.3
FAN18G1141 Fragaria x ananassa HOM05D004694 ORTHO05D006576 2.4e-151 538.9 292 86.3
Cfa018868 Carpinus fangiana HOM05D004694 ORTHO05D006576 4.2e-151 538.1 292 87.0
Atru.chr9.1027_Atru.chr9.1028 Acer truncatum HOM05D004694 ORTHO05D006576 1.6e-150 536.2 292 85.6
Prupe.5G154600 Prunus persica HOM05D004694 ORTHO05D006576 1.6e-150 536.2 293 86.3
Peaxi162Scf00089g00419 Petunia axillaris HOM05D004694 ORTHO05D006576 2.1e-150 535.8 292 87.0
QL10p004639 Quercus lobata HOM05D004694 ORTHO05D006576 2.7e-150 535.4 291 87.3
VMungo1215G0651 Vigna mungo HOM05D004694 ORTHO05D006576 2.7e-150 535.4 292 86.6
Sed0009275 Sechium edule HOM05D004694 ORTHO05D006576 3.5e-150 535.0 286 88.1
ECA246G0215 Erigeron canadensis HOM05D004694 ORTHO05D006576 4.6e-150 534.6 292 86.3
Eucgr.K02748 Eucalyptus grandis HOM05D004694 ORTHO05D006576 4.6e-150 534.6 292 86.3
Nitab4.5_0001664g0050 Nicotiana tabacum HOM05D004694 ORTHO05D006576 4.6e-150 534.6 292 86.6
FAN13G0009 Fragaria x ananassa HOM05D004694 ORTHO05D006576 6.0e-150 534.3 292 85.6
FAN04G1296 Fragaria x ananassa HOM05D004694 ORTHO05D006576 1.0e-149 533.5 292 85.6
FAN08G1582 Fragaria x ananassa HOM05D004694 ORTHO05D006576 1.0e-149 533.5 292 85.3
TWI39G0550 Tripterygium wilfordii HOM05D004694 ORTHO05D006576 1.3e-149 533.1 292 86.6
RcHm_v2.0_Chr7g0190721 Rosa chinensis HOM05D004694 ORTHO05D006576 2.3e-149 532.3 293 86.0
Manes.14G054100 Manihot esculenta HOM05D004694 ORTHO05D006576 3.9e-149 531.6 292 87.0
Duzib205G1411 Durio zibethinus HOM05D004694 ORTHO05D006576 6.6e-149 530.8 292 86.3
Glyma.05G045900 Glycine max HOM05D004694 ORTHO05D006576 6.6e-149 530.8 286 86.7
CAN.G352.42 Capsicum annuum HOM05D004694 ORTHO05D006576 8.7e-149 530.4 292 86.3
Ciclev10019499m.g Citrus clementina HOM05D004694 ORTHO05D006576 1.1e-148 530.0 292 86.0
Actinidia08860 Actinidia chinensis HOM05D004694 ORTHO05D006576 1.5e-148 529.6 292 86.3
Phvul.003G209101 Phaseolus vulgaris HOM05D004694 ORTHO05D006576 1.9e-148 529.3 292 84.6
MD06G1147700 Malus domestica HOM05D004694 ORTHO05D006576 2.5e-148 528.9 293 86.0
Glyma.17G128100 Glycine max HOM05D004694 ORTHO05D006576 3.3e-148 528.5 291 85.6
Lsat_1_v5_gn_5_13501 Lactuca sativa HOM05D004694 ORTHO05D006576 3.3e-148 528.5 292 84.9
CSS0001791 Camellia sinensis var. sinensis HOM05D004694 ORTHO05D006576 4.3e-148 528.1 292 86.0
Nitab4.5_0003680g0030 Nicotiana tabacum HOM05D004694 ORTHO05D006576 5.6e-148 527.7 292 85.6
Solyc03g111140.3 Solanum lycopersicum HOM05D004694 ORTHO05D006576 5.6e-148 527.7 292 85.3
TAR622G1078 Trochodendron aralioides HOM05D004694 ORTHO05D006576 1.6e-147 526.2 292 84.6
Potri.015G092000 Populus trichocarpa HOM05D004694 ORTHO05D006576 2.1e-147 525.8 287 86.1
Sopen03g030290 Solanum pennellii HOM05D004694 ORTHO05D006576 2.8e-147 525.4 292 85.3
AT5G03860 Arabidopsis thaliana HOM05D004694 ORTHO05D006576 3.6e-147 525.0 292 84.9
Rhsim12G0172800 Rhododendron simsii HOM05D004694 ORTHO05D006576 3.6e-147 525.0 292 84.6
AL6G13430 Arabidopsis lyrata HOM05D004694 ORTHO05D006576 4.8e-147 524.6 292 84.6
DCAR_016413 Daucus carota HOM05D004694 ORTHO05D006576 1.4e-146 523.1 292 85.6
Sopen03g030280 Solanum pennellii HOM05D004694 ORTHO05D006576 1.4e-146 523.1 292 84.9
Aqoxy3G01456 Aquilegia oxysepala HOM05D004694 ORTHO05D006576 1.8e-146 522.7 292 84.2
Solyc03g111130.1 Solanum lycopersicum HOM05D004694 ORTHO05D006576 1.8e-146 522.7 292 84.9
Carub.0006s0280 Capsella rubella HOM05D004694 ORTHO05D006576 3.1e-146 521.9 292 84.6
PGSC0003DMG400015192 Solanum tuberosum HOM05D004694 ORTHO05D006576 3.1e-146 521.9 292 84.9
CANSAT11G0344 Cannabis sativa HOM05D004694 ORTHO05D006576 9.0e-146 520.4 286 86.0
Sp6g38870 Schrenkiella parvula HOM05D004694 ORTHO05D006576 9.0e-146 520.4 292 84.6
Gorai.001G060900 Gossypium raimondii HOM05D004694 ORTHO05D006576 1.5e-145 519.6 286 86.7
SalBow5G3571 Salvia bowleyana HOM05D004694 ORTHO05D006576 2.0e-145 519.2 292 84.2
Gohir.D07G057400 Gossypium hirsutum HOM05D004694 ORTHO05D006576 4.5e-145 518.1 286 86.7
Oeu044618.1 Olea europaea HOM05D004694 ORTHO05D006576 4.5e-145 518.1 287 85.4
Sabra15G0113800 Salix brachista HOM05D004694 ORTHO05D006576 4.5e-145 518.1 287 84.3
THA.LOC104825008 Tarenaya hassleriana HOM05D004694 ORTHO05D006576 4.5e-145 518.1 286 86.0
Dinv11097 Davidia involucrata HOM05D004694 ORTHO05D006576 5.8e-145 517.7 295 84.7
BolC2t06123H Brassica oleracea HOM05D004694 ORTHO05D006576 9.9e-145 516.9 292 83.9
Ca_23552_v3 Cicer arietinum L. HOM05D004694 ORTHO05D006576 9.9e-145 516.9 292 85.6
Migut.I00493 Erythranthe guttata HOM05D004694 ORTHO05D006576 1.3e-144 516.5 292 83.2
Gohir.A07G053000 Gossypium hirsutum HOM05D004694 ORTHO05D006576 1.3e-144 516.5 286 86.0
BraA02t04789Z Brassica rapa HOM05D004694 ORTHO05D006576 1.7e-144 516.2 292 83.9
Thhalv10015335m.g Eutrema salsugineum HOM05D004694 ORTHO05D006576 2.9e-144 515.4 292 83.6
MBI11_g05409_MAGBIO Magnolia biondii HOM05D004694 ORTHO05D006576 4.9e-144 514.6 292 83.9
C02p01580 Brassica napus HOM05D004694 ORTHO05D006576 8.4e-144 513.8 292 83.9
Hma1.2p1_0014F.1_g009775 Hydrangea macrophylla HOM05D004694 ORTHO05D006576 8.4e-144 513.8 287 85.0
Phvul.003G209200 Phaseolus vulgaris HOM05D004694 ORTHO05D006576 8.4e-144 513.8 289 84.1
BcaB05g21798 Brassica carinata HOM05D004694 ORTHO05D006576 1.1e-143 513.5 292 83.9
CARHR209400 Cardamine hirsuta HOM05D004694 ORTHO05D006576 1.4e-143 513.1 292 83.6
Dinv04852 Davidia involucrata HOM05D004694 ORTHO05D006576 1.4e-143 513.1 292 84.2
Nn4g22401 Nelumbo nucifera HOM05D004694 ORTHO05D006576 2.4e-143 512.3 292 83.2
Lj5C97G9 Lonicera japonica HOM05D004694 ORTHO05D006576 7.1e-143 510.8 322 77.6
Aa31LG1G21410 Aethionema arabicum HOM05D004694 ORTHO05D006576 1.2e-142 510.0 292 82.9
vmacro16662 Vaccinium macrocarpon HOM05D004694 ORTHO05D006576 1.2e-142 510.0 316 78.2
VMungo1215G1303 Vigna mungo HOM05D004694 ORTHO05D006576 3.5e-142 508.4 286 84.3
PGR044G1202 Punica granatum HOM05D004694 ORTHO05D006576 3.9e-141 505.0 293 82.9
EL10As4g23460 Beta vulgaris HOM05D004694 ORTHO05D006576 1.5e-140 503.1 292 80.5
unitig_21.g20324 Utricularia gibba HOM05D004694 ORTHO05D006576 3.3e-140 501.9 289 82.7
PGSC0003DMG400015194 Solanum tuberosum HOM05D004694 ORTHO05D006576 5.6e-140 501.1 292 80.1
PSO017G1181 Papaver somniferum HOM05D004694 ORTHO05D006576 1.3e-139 500.0 292 82.5
PSO478G2802 Papaver somniferum HOM05D004694 ORTHO05D006576 2.1e-139 499.2 292 82.2
Sopen03g030270 Solanum pennellii HOM05D004694 ORTHO05D006576 4.0e-138 495.0 292 79.1
SGA_v2.0_scaffold80G25701 Striga asiatica HOM05D004694 ORTHO05D006576 5.8e-137 491.1 285 82.8
Sc14g0007560 Simmondsia chinensis HOM05D004694 ORTHO05D006576 2.9e-136 488.8 292 80.1
AUR62025866 Chenopodium quinoa HOM05D004694 ORTHO05D006576 4.9e-136 488.0 293 78.5
TAR374G0737 Trochodendron aralioides HOM05D004694 ORTHO05D002940 5.5e-135 484.6 349 68.5
CDE09G0730 Ceratophyllum demersum HOM05D004694 ORTHO05D006576 2.7e-134 482.3 292 78.8
CAN.G352.43 Capsicum annuum HOM05D004694 ORTHO05D006576 7.9e-134 480.7 292 77.1
AUR62029660 Chenopodium quinoa HOM05D004694 ORTHO05D006576 1.8e-133 479.6 286 77.6
Zm00001eb079170 Zea mays HOM05D004694 ORTHO05D006576 1.6e-131 473.0 293 76.8
Cpa.g.sc4.107 Carica papaya HOM05D004694 ORTHO05D006576 1.1e-130 470.3 292 78.4
Ah.11g044960 Amaranthus hybridus HOM05D004694 ORTHO05D006576 9.0e-130 467.2 287 75.3
CDE08G1017 Ceratophyllum demersum HOM05D004694 ORTHO05D006576 1.2e-129 466.8 285 78.2
Os04g0486950 Oryza sativa ssp. japonica HOM05D004694 ORTHO05D006576 1.4e-127 459.9 298 75.2
Haze_07250 Corylus avellana HOM05D004694 ORTHO05D006576 3.2e-127 458.8 292 77.1
QL10p004544 Quercus lobata HOM05D004694 ORTHO05D006576 1.8e-125 453.0 271 80.4
ATR0824G173 Amborella trichopoda HOM05D004694 ORTHO05D006576 8.7e-125 450.7 286 73.4
SalBow1G5430 Salvia bowleyana HOM05D004694 ORTHO05D006576 7.4e-124 447.6 282 74.8
HPP92_023361 Vanilla planifolia HOM05D004694 ORTHO05D006576 7.4e-124 447.6 292 74.0
HPP92_023371 Vanilla planifolia HOM05D004694 ORTHO05D006576 7.4e-124 447.6 292 74.3
SalBow1G3673 Salvia bowleyana HOM05D004694 ORTHO05D006576 1.3e-123 446.8 282 74.5
SEGI_27575 Sequoiadendron giganteum HOM05D004694 ORTHO05D006576 6.3e-123 444.5 292 72.6
SMO367G0555 Selaginella moellendorffii HOM05D004694 ORTHO05D006576 1.3e-120 436.8 292 74.0
MSTRG.9318 Avicennia marina HOM05D004694 ORTHO05D006576 1.5e-116 423.3 237 84.4
Pp3c20_22510 Physcomitrium patens HOM05D004694 ORTHO05D006576 2.2e-115 419.5 287 71.4
Mapoly0154s0035 Marchantia polymorpha HOM05D004694 ORTHO05D006576 2.4e-114 416.0 281 70.8
Cc04_g10080 Coffea canephora HOM05D004694 ORTHO05D006576 4.1e-114 415.2 292 71.2
GSVIVG01008494001 Vitis vinifera HOM05D004694 ORTHO05D006576 2.5e-111 406.0 281 71.9
AagrBONN_evm.TU.Sc2ySwM_117.2387 Anthoceros agrestis HOM05D004694 ORTHO05D006576 4.2e-111 405.2 281 68.3
CBR_g26132 Chara braunii HOM05D004694 ORTHO05D006576 1.0e-109 400.6 286 67.1
AagrBONN_evm.TU.Sc2ySwM_228.3843 Anthoceros agrestis HOM05D004694 ORTHO05D006576 2.2e-104 382.9 281 65.1
SalBow1G1465 Salvia bowleyana HOM05D004694 ORTHO05D006576 6.3e-83 311.6 276 59.4
SalBow1G5822 Salvia bowleyana HOM05D004694 ORTHO05D006576 6.3e-83 311.6 276 59.4
Actinidia36796 Actinidia chinensis HOM05D004694 ORTHO05D006576 3.2e-74 282.7 292 54.8
Cre03.g144807 Chlamydomonas reinhardtii HOM05D004694 ORTHO05D006576 5.4e-74 282.0 291 49.8
Duzib068G0556 Durio zibethinus HOM05D004694 ORTHO05D006576 2.3e-61 240.0 139 82.7
PGSC0003DMG402015193 Solanum tuberosum HOM05D004694 ORTHO05D016782 7.5e-60 235.0 133 83.5
SalBow1G0618 Salvia bowleyana HOM05D004694 ORTHO05D006576 2.8e-54 216.5 202 56.4
BraA09t39454Z Brassica rapa HOM05D002984 ORTHO05D003561 1.7e-51 207.2 137 71.5
BcaC08g44622 Brassica carinata HOM05D004694 ORTHO05D016782 2.2e-51 206.8 124 79.0
A03p11210 Brassica napus HOM05D004694 ORTHO05D016782 2.7e-49 199.9 127 74.0
C06p36560 Brassica napus HOM05D004694 ORTHO05D016782 2.7e-49 199.9 127 74.0
C06p20980 Brassica napus HOM05D004694 ORTHO05D016782 1.4e-45 187.6 115 76.5
BolC6t37284H Brassica oleracea HOM05D004694 ORTHO05D016782 1.4e-45 187.6 115 76.5
Potri.012G094532 Populus trichocarpa HOM05D004694 ORTHO05D006576 4.0e-45 186.0 103 86.4
A09p39550 Brassica napus HOM05D004694 ORTHO05D016782 8.9e-45 184.9 119 73.1
BraA01t01659Z Brassica rapa HOM05D004694 ORTHO05D016782 8.9e-45 184.9 119 73.1
PGSC0003DMG401015193 Solanum tuberosum HOM05D004694 ORTHO05D006576 5.4e-34 149.1 76 86.8
Hund10205 Selenicereus undatus HOM05D004694 ORTHO05D006576 1.2e-33 147.9 75 89.3
Ca_03499_v3 Cicer arietinum L. HOM05D004694 ORTHO05D016782 3.5e-33 146.4 79 87.3
Glyma.19G088650 Glycine max HOM05D004694 ORTHO05D213888 3.9e-24 116.3 63 82.5
SalBow1G0228 Salvia bowleyana HOM05D004694 ORTHO05D006576 2.1e-22 110.5 77 66.2
MD14G1161800 Malus domestica HOM05D004694 ORTHO05D016782 4.6e-17 92.8 63 71.4
MD14G1161700 Malus domestica HOM05D004694 ORTHO05D248771 1.9e-07 60.8 156 32.1


User provided reference genes

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