Gene: BraA09t39454Z
General Information
Structural Information
- Species Brassica rapa
- Gene Identifier BraA09t39454Z
- Transcript Identifier BraA09t39454Z
- Gene Type Coding gene
- Location A09 : 42595900-42606381 : negative
Gene Family Information
- ID HOM05D002984
- #Genes/#Species 231/93
- Phylogenetic origin
- ID ORTHO05D003561
- #Genes/#Species 215/91
- Phylogenetic origin
Gene Duplication Information
- Block Duplication Block duplicate
Labels
Identifiers
- uniprot A0A3P5YKI7
Descriptions
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0010091 | ISO | PLAZA Integrative Orthology | trichome branching | AT1G25540 |
| GO:0010114 | ISO | PLAZA Integrative Orthology | response to red light | AT1G25540 |
| GO:0050832 | ISO | PLAZA Integrative Orthology | defense response to fungus | AT1G25540 |
| GO:0045893 | ISO | PLAZA Integrative Orthology | positive regulation of transcription, DNA-templated | AT1G25540 |
| GO:0010218 | ISO | PLAZA Integrative Orthology | response to far red light | AT1G25540 |
| GO:0009909 | ISO | PLAZA Integrative Orthology | regulation of flower development | AT1G25540 |
| GO:0031349 | ISO | PLAZA Integrative Orthology | positive regulation of defense response | AT1G25540 |
| GO:0009911 | ISO | PLAZA Integrative Orthology | positive regulation of flower development | AT1G25540 |
| GO:0009867 | ISO | PLAZA Integrative Orthology | jasmonic acid mediated signaling pathway | AT1G25540 |
| GO:1905499 | ISO | PLAZA Integrative Orthology | trichome papilla formation | AT1G25540 |
| GO:0009585 | ISO | PLAZA Integrative Orthology | red, far-red light phototransduction | AT1G25540 |
| GO:0006097 | IEA | GOA Database | glyoxylate cycle | |
| GO:0006097 | IEA | InterPro | glyoxylate cycle | |
| GO:0006099 | IEA | GOA Database | tricarboxylic acid cycle |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005515 | ISO | PLAZA Integrative Orthology | protein binding | Solyc12g070100.2 |
| GO:0003677 | ISO | PLAZA Integrative Orthology | DNA binding | AT1G25540 |
| GO:0004474 | IEA | GOA Database | malate synthase activity | |
| GO:0004474 | IEA | InterPro | malate synthase activity | |
| GO:0003824 | IEA | GOA Database | catalytic activity | |
| GO:0003824 | IEA | InterPro | catalytic activity | |
| GO:0016740 | IEA | GOA Database | transferase activity |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0016592 | ISO | PLAZA Integrative Orthology | mediator complex | AT1G25540 |
| GO:0005634 | ISO | PLAZA Integrative Orthology | nucleus | AT1G25540 |
| GO:0009514 | IEA | GOA Database | glyoxysome | |
| GO:0005777 | IEA | GOA Database | peroxisome |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR045105 | Med25/PTOV1 |
| IPR011076 | Malate synthase superfamily |
| IPR001465 | Malate synthase |
| IPR044856 | Malate synthase, C-terminal superfamily |
| IPR021419 | Mediator of RNA polymerase II transcription subunit 25, von Willebrand factor type A domain |
| IPR036465 | von Willebrand factor A-like domain superfamily |
| Mapman id | Description |
|---|---|
| 15.3.4.4.5.1 | RNA biosynthesis.RNA polymerase II-dependent transcription.transcription co-activation.MEDIATOR complex.other components.component MED25 |