Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.SMV5T8 Arachis hypogaea HOM05D006924 ORTHO05D008218 4.9e-167 591.3 343 100.0
arahy.Tifrunner.gnm1.ann1.748QI4 Arachis hypogaea HOM05D006924 ORTHO05D008218 4.4e-152 541.6 343 92.1
Glyma.04G068000 Glycine max HOM05D006924 ORTHO05D008218 6.3e-90 335.1 318 62.3
VMungo1309G0550 Vigna mungo HOM05D006924 ORTHO05D008218 1.2e-85 320.9 347 60.2
Glyma.06G069700 Glycine max HOM05D006924 ORTHO05D008218 6.1e-85 318.5 351 60.1
Lalb_Chr23g0268731 Lupinus albus HOM05D006924 ORTHO05D008218 8.0e-85 318.2 320 62.8
Ca_15720_v3 Cicer arietinum L. HOM05D006924 ORTHO05D008218 6.7e-84 315.1 313 57.8
Phvul.009G094300 Phaseolus vulgaris HOM05D006924 ORTHO05D008218 1.8e-81 307.0 347 58.5
Lj1g0004722 Lotus japonicus HOM05D006924 ORTHO05D008218 2.1e-77 293.5 318 59.1
Psat5g028520 Pisum sativum HOM05D006924 ORTHO05D008218 2.3e-76 290.0 315 54.6
Medtr3g107530 Medicago truncatula HOM05D006924 ORTHO05D008218 1.6e-72 277.3 316 57.6
GSVIVG01035827001 Vitis vinifera HOM05D006924 ORTHO05D008218 6.8e-68 261.9 312 53.2
QL02p022351 Quercus lobata HOM05D006924 ORTHO05D008218 4.1e-65 252.7 337 51.9
Cfa013171 Carpinus fangiana HOM05D006924 ORTHO05D008218 3.5e-64 249.6 318 56.6
Potri.006G251700 Populus trichocarpa HOM05D006924 ORTHO05D008218 1.1e-62 244.6 263 57.0
Sabra06G0196700 Salix brachista HOM05D006924 ORTHO05D008218 1.1e-62 244.6 263 57.4
Manes.03G016800 Manihot esculenta HOM05D006924 ORTHO05D008218 4.2e-62 242.7 273 57.9
TPR.G31774 Trifolium pratense HOM05D006924 ORTHO05D008218 7.2e-62 241.9 231 58.9
TWI34G0486 Tripterygium wilfordii HOM05D006924 ORTHO05D008218 2.8e-61 240.0 265 55.1
Ciclev10010768m.g Citrus clementina HOM05D006924 ORTHO05D008218 3.6e-61 239.6 258 60.5
Dinv15967 Davidia involucrata HOM05D006924 ORTHO05D008218 4.7e-61 239.2 281 56.6
Dinv18229 Davidia involucrata HOM05D006924 ORTHO05D008218 4.7e-61 239.2 281 56.6
Thecc.09G150000 Theobroma cacao HOM05D006924 ORTHO05D008218 6.1e-61 238.8 266 54.1
COL.COLO4_00196 Corchorus olitorius HOM05D006924 ORTHO05D008218 1.4e-60 237.7 271 57.9
TWI63G1089 Tripterygium wilfordii HOM05D006924 ORTHO05D008218 1.8e-60 237.3 331 48.0
CSS0024674 Camellia sinensis var. sinensis HOM05D006924 ORTHO05D008218 2.3e-60 236.9 265 50.9
Migut.E01789 Erythranthe guttata HOM05D006924 ORTHO05D008218 5.2e-60 235.7 323 50.2
Gorai.004G274200 Gossypium raimondii HOM05D006924 ORTHO05D008218 6.8e-60 235.3 275 56.7
Duzib187G1593 Durio zibethinus HOM05D006924 ORTHO05D008218 8.9e-60 235.0 324 50.9
Gohir.D08G257200 Gossypium hirsutum HOM05D006924 ORTHO05D008218 2.0e-59 233.8 271 55.4
Gohir.A08G236600 Gossypium hirsutum HOM05D006924 ORTHO05D008218 1.7e-58 230.7 265 58.5
PSO455G0271 Papaver somniferum HOM05D006924 ORTHO05D008218 1.7e-58 230.7 363 49.0
Nitab4.5_0009676g0020 Nicotiana tabacum HOM05D006924 ORTHO05D008218 2.2e-58 230.3 258 55.8
THA.LOC104815037 Tarenaya hassleriana HOM05D006924 ORTHO05D008218 8.3e-58 228.4 350 47.7
Sc09g0008380 Simmondsia chinensis HOM05D006924 ORTHO05D008218 1.1e-57 228.0 285 54.7
FAN27G0236 Fragaria x ananassa HOM05D006924 ORTHO05D008218 1.8e-57 227.3 281 50.9
Lsat_1_v5_gn_5_30481 Lactuca sativa HOM05D006924 ORTHO05D008218 2.4e-57 226.9 292 46.6
ECA246G2052 Erigeron canadensis HOM05D000004 ORTHO05D000048 4.1e-57 226.1 376 43.9
Nitab4.5_0002007g0080 Nicotiana tabacum HOM05D006924 ORTHO05D008218 5.4e-57 225.7 260 56.5
DCAR_001517 Daucus carota HOM05D006924 ORTHO05D008218 9.2e-57 224.9 341 49.3
Cc08_g00950 Coffea canephora HOM05D006924 ORTHO05D008218 1.2e-56 224.6 281 48.4
vmacro11153 Vaccinium macrocarpon HOM05D006924 ORTHO05D008218 1.2e-56 224.6 273 52.0
CsaV3_3G046540 Cucumis sativus L. HOM05D006924 ORTHO05D008218 2.0e-56 223.8 269 54.3
Actinidia13248 Actinidia chinensis HOM05D006924 ORTHO05D008218 2.7e-56 223.4 274 51.8
FAN24G1985 Fragaria x ananassa HOM05D006924 ORTHO05D008218 3.5e-56 223.0 331 47.4
HanXRQChr08g0234821 Helianthus annuus HOM05D006924 ORTHO05D008218 3.5e-56 223.0 306 48.7
MSTRG.1715 Avicennia marina HOM05D006924 ORTHO05D008218 7.8e-56 221.9 354 49.2
CAN.G6.23 Capsicum annuum HOM05D006924 ORTHO05D008218 1.3e-55 221.1 267 49.1
MELO3C003685.2 Cucumis melo HOM05D006924 ORTHO05D008218 1.3e-55 221.1 263 54.8
Aa31LG3G15920 Aethionema arabicum HOM05D006924 ORTHO05D008218 2.3e-55 220.3 271 53.5
MD08G1147000 Malus domestica HOM05D006924 ORTHO05D008218 2.3e-55 220.3 339 47.2
Hund25749 Selenicereus undatus HOM05D006924 ORTHO05D008218 2.9e-55 219.9 353 44.2
FAN20G0173 Fragaria x ananassa HOM05D006924 ORTHO05D008218 8.6e-55 218.4 270 53.3
PSO455G0276 Papaver somniferum HOM05D006924 ORTHO05D008218 8.6e-55 218.4 283 51.2
Peaxi162Scf00073g01120 Petunia axillaris HOM05D006924 ORTHO05D008218 1.9e-54 217.2 261 56.3
Nn8g39393 Nelumbo nucifera HOM05D006924 ORTHO05D008218 3.3e-54 216.5 266 56.0
Eucgr.C02804 Eucalyptus grandis HOM05D006924 ORTHO05D008218 5.6e-54 215.7 347 44.1
Solyc08g061140.3 Solanum lycopersicum HOM05D006924 ORTHO05D008218 7.3e-54 215.3 261 51.7
Aqoxy7G02106 Aquilegia oxysepala HOM05D006924 ORTHO05D008218 9.5e-54 214.9 322 48.1
CARHR201990 Cardamine hirsuta HOM05D006924 ORTHO05D008218 1.6e-53 214.2 262 54.2
FvH4_2g29450 Fragaria vesca HOM05D006924 ORTHO05D008218 1.6e-53 214.2 283 50.5
Cpa.g.sc115.10 Carica papaya HOM05D006924 ORTHO05D008218 2.1e-53 213.8 261 51.3
PSO170G6279 Papaver somniferum HOM05D006924 ORTHO05D008218 2.8e-53 213.4 284 50.4
SGA_v2.0_scaffold163G37992 Striga asiatica HOM05D004464 ORTHO05D005135 4.7e-53 212.6 272 51.5
ClCG05G017060 Citrullus lanatus HOM05D006924 ORTHO05D008218 6.1e-53 212.2 332 48.5
Sopen08g016210 Solanum pennellii HOM05D006924 ORTHO05D008218 6.1e-53 212.2 262 51.1
unitig_26.g9317 Utricularia gibba HOM05D006924 ORTHO05D008218 8.0e-53 211.8 260 49.2
AT5G11270 Arabidopsis thaliana HOM05D006924 ORTHO05D008218 1.0e-52 211.5 268 53.0
BraA10t44702Z Brassica rapa HOM05D006924 ORTHO05D008218 1.4e-52 211.1 265 54.0
CANSAT21G2575 Cannabis sativa HOM05D006924 ORTHO05D008218 1.8e-52 210.7 307 50.2
PGSC0003DMG400020785 Solanum tuberosum HOM05D006924 ORTHO05D008218 1.8e-52 210.7 268 50.4
EL10Ac2g02609 Beta vulgaris HOM05D006924 ORTHO05D008218 3.1e-52 209.9 278 51.8
RcHm_v2.0_Chr6g0298241 Rosa chinensis HOM05D006924 ORTHO05D008218 3.1e-52 209.9 313 45.4
Carub.0006s0974 Capsella rubella HOM05D006924 ORTHO05D008218 4.0e-52 209.5 260 53.1
A10p26450 Brassica napus HOM05D006924 ORTHO05D008218 6.8e-52 208.8 257 52.9
CDE04G2397 Ceratophyllum demersum HOM05D006924 ORTHO05D008218 6.8e-52 208.8 274 45.6
Ah.12g064050 Amaranthus hybridus HOM05D006924 ORTHO05D008218 1.5e-51 207.6 330 45.2
AL6G21900 Arabidopsis lyrata HOM05D006924 ORTHO05D008218 2.6e-51 206.8 266 51.9
Rhsim02G0195700 Rhododendron simsii HOM05D006924 ORTHO05D008218 4.4e-51 206.1 263 52.5
Sp6g32290 Schrenkiella parvula HOM05D006924 ORTHO05D008218 5.8e-51 205.7 262 52.3
BolC9t59383H Brassica oleracea HOM05D006924 ORTHO05D008218 3.7e-50 203.0 259 52.9
Prupe.1G478200 Prunus persica HOM05D006924 ORTHO05D008218 3.7e-50 203.0 171 62.6
BcaC04g19245 Brassica carinata HOM05D006924 ORTHO05D008218 4.9e-50 202.6 265 52.1
Sed0001141 Sechium edule HOM05D006924 ORTHO05D008218 4.9e-50 202.6 262 48.1
BcaB08g37076 Brassica carinata HOM05D006924 ORTHO05D008218 2.4e-49 200.3 268 50.4
Os06g0601000 Oryza sativa ssp. japonica HOM05D006924 ORTHO05D008218 4.1e-49 199.5 256 50.8
Atru.chr7.2389 Acer truncatum HOM05D006924 ORTHO05D008218 9.2e-49 198.4 331 45.6
Zm00001eb385620 Zea mays HOM05D006924 ORTHO05D008218 9.2e-49 198.4 261 47.5
Thhalv10013990m.g Eutrema salsugineum HOM05D006924 ORTHO05D008218 1.6e-48 197.6 256 50.4
FAN15G1620 Fragaria x ananassa HOM05D006924 ORTHO05D008218 1.6e-48 197.6 176 60.2
ATR0564G047 Amborella trichopoda HOM05D006924 ORTHO05D008218 2.0e-48 197.2 264 46.2
Rhsim02G0198800 Rhododendron simsii HOM05D006924 ORTHO05D008218 1.3e-47 194.5 335 43.0
AUR62024897 Chenopodium quinoa HOM05D006924 ORTHO05D008218 3.6e-45 186.4 267 44.2
MBI04_g07630_MAGBIO Magnolia biondii HOM05D006924 ORTHO05D008218 2.0e-43 180.6 272 48.9
CiPaw.08G012700 Carya illinoinensis HOM05D006924 ORTHO05D008218 1.7e-42 177.6 292 46.9
SalBow1G5089 Salvia bowleyana HOM05D006924 ORTHO05D008218 4.1e-41 172.9 148 59.5
HPP92_003651 Vanilla planifolia HOM05D000347 ORTHO05D001997 6.6e-39 165.6 164 57.3
PGR044G1352 Punica granatum HOM05D006924 ORTHO05D008218 1.1e-38 164.9 260 48.1
Haze_21546 Corylus avellana HOM05D006924 ORTHO05D008218 1.4e-36 157.9 304 46.7
TAR626G1567 Trochodendron aralioides HOM05D006924 ORTHO05D008218 9.9e-35 151.8 147 58.5
CSS0004992 Camellia sinensis var. sinensis HOM05D006924 ORTHO05D008218 1.6e-32 144.4 119 60.5
Lj7C719T2 Lonicera japonica HOM05D006924 ORTHO05D008218 4.7e-29 132.9 228 43.9
Mapoly0029s0145 Marchantia polymorpha HOM05D006924 ORTHO05D008218 3.4e-27 126.7 256 37.9
Pp3c19_15790 Physcomitrium patens HOM05D006924 ORTHO05D008218 1.4e-25 121.3 276 38.0
AUR62030642 Chenopodium quinoa HOM05D006924 ORTHO05D008218 2.7e-24 117.1 267 34.1
Atru.chr7.2280 Acer truncatum HOM05D006924 ORTHO05D008218 9.6e-22 108.6 120 50.0
Atru.chr10.503 Acer truncatum HOM05D006924 ORTHO05D008218 2.4e-20 104.0 320 36.2
Haze_21544 Corylus avellana HOM05D006924 ORTHO05D008218 5.1e-15 86.3 55 72.7
SEGI_32810 Sequoiadendron giganteum HOM05D006924 ORTHO05D008218 5.1e-15 86.3 243 34.2
TPR.G28713 Trifolium pratense HOM05D006924 ORTHO05D008218 1.4e-12 78.2 47 74.5
Atru.chr1.1063 Acer truncatum HOM05D006924 ORTHO05D008218 6.9e-12 75.9 84 50.0
Psat5g000080 Pisum sativum HOM05D006924 ORTHO05D008218 2.9e-10 70.5 97 48.5
TPR.G31762 Trifolium pratense HOM05D006924 ORTHO05D008218 1.4e-09 68.2 81 53.1
SMO367G1066 Selaginella moellendorffii HOM05D024584 ORTHO05D008218 7.1e-09 65.9 54 48.1
Nn2g11969 Nelumbo nucifera HOM05D006924 ORTHO05D008218 9.3e-09 65.5 178 33.7
AagrBONN_evm.TU.Sc2ySwM_368.1808 Anthoceros agrestis HOM05D006924 ORTHO05D008218 1.8e-07 61.2 128 35.2


User provided reference genes

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