Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.SF9HJV Arachis hypogaea HOM05D004148 ORTHO05D004709 0.0e+00 1744.9 878 100.0
arahy.Tifrunner.gnm1.ann1.J94639 Arachis hypogaea HOM05D004148 ORTHO05D004709 0.0e+00 1496.1 874 87.8
Lj1g0011831 Lotus japonicus HOM05D004148 ORTHO05D004709 2.6e-305 1052.0 885 63.8
Glyma.01G244400 Glycine max HOM05D004148 ORTHO05D004709 8.3e-304 1047.0 877 63.5
Phvul.002G053700 Phaseolus vulgaris HOM05D004148 ORTHO05D004709 1.6e-302 1042.7 897 61.4
VMungo1215G0285 Vigna mungo HOM05D004148 ORTHO05D004709 1.9e-295 1019.2 897 60.2
Psat4g228400 Pisum sativum HOM05D004148 ORTHO05D004709 4.2e-271 938.3 883 59.1
Medtr5g004880 Medicago truncatula HOM05D004148 ORTHO05D004709 1.3e-264 916.8 874 58.1
Lalb_Chr16g0376251 Lupinus albus HOM05D004148 ORTHO05D004709 4.9e-248 861.7 877 55.9
Ca_24340_v3 Cicer arietinum L. HOM05D004148 ORTHO05D004709 1.0e-197 694.5 605 60.8
QL01p018674 Quercus lobata HOM05D004148 ORTHO05D004709 3.6e-190 669.5 909 45.9
Cfa010235 Carpinus fangiana HOM05D004148 ORTHO05D004709 6.1e-190 668.7 916 45.3
Dinv32838 Davidia involucrata HOM05D004148 ORTHO05D004709 6.6e-184 648.7 926 44.9
Atru.chr3.3014 Acer truncatum HOM05D004148 ORTHO05D004709 1.8e-181 640.6 912 45.4
Prupe.6G151400 Prunus persica HOM05D004148 ORTHO05D004709 4.9e-179 632.5 900 45.7
Ciclev10027694m.g Citrus clementina HOM05D004148 ORTHO05D004709 1.4e-178 630.9 903 44.1
Thecc.09G266000 Theobroma cacao HOM05D004148 ORTHO05D004709 4.6e-177 625.9 917 43.2
MD11G1178600 Malus domestica HOM05D004148 ORTHO05D004709 2.3e-173 613.6 914 43.8
RcHm_v2.0_Chr5g0049541 Rosa chinensis HOM05D004148 ORTHO05D004709 3.4e-172 609.8 900 44.3
Gohir.D05G079200 Gossypium hirsutum HOM05D004148 ORTHO05D004709 5.6e-167 592.4 929 42.3
Gohir.A05G076400 Gossypium hirsutum HOM05D004148 ORTHO05D004709 1.6e-166 590.9 937 42.6
Gorai.009G080700 Gossypium raimondii HOM05D004148 ORTHO05D004709 4.7e-166 589.3 930 42.4
FvH4_4g33990 Fragaria vesca HOM05D004148 ORTHO05D004709 1.1e-165 588.2 893 43.2
FAN22G0787 Fragaria x ananassa HOM05D004148 ORTHO05D004709 2.9e-163 580.1 888 43.1
FAN17G2621 Fragaria x ananassa HOM05D004148 ORTHO05D004709 1.9e-162 577.4 893 43.1
TWI60G0836 Tripterygium wilfordii HOM05D004148 ORTHO05D004709 2.1e-161 573.9 929 40.8
CANSAT54G2785 Cannabis sativa HOM05D004148 ORTHO05D004709 2.5e-159 567.0 911 41.8
Potri.009G153300 Populus trichocarpa HOM05D004148 ORTHO05D004709 4.7e-158 562.8 915 41.5
TAR623G1397 Trochodendron aralioides HOM05D004148 ORTHO05D004709 4.0e-157 559.7 926 41.9
Cpa.g.sc103.97 Carica papaya HOM05D004148 ORTHO05D004709 3.4e-156 556.6 907 41.5
FAN12G2472 Fragaria x ananassa HOM05D004148 ORTHO05D004709 1.1e-154 551.6 854 43.2
Actinidia12896 Actinidia chinensis HOM05D001400 ORTHO05D001795 1.6e-153 547.7 902 41.8
MELO3C020298.2 Cucumis melo HOM05D004148 ORTHO05D004709 1.0e-152 545.0 913 40.1
Lj2A891G11 Lonicera japonica HOM05D004148 ORTHO05D004709 1.7e-152 544.3 911 39.1
Sed0012220 Sechium edule HOM05D004148 ORTHO05D004709 5.1e-152 542.7 913 39.8
Nn2g14486 Nelumbo nucifera HOM05D004148 ORTHO05D004709 2.6e-148 530.4 927 38.7
Rhsim13G0199700 Rhododendron simsii HOM05D004148 ORTHO05D004709 5.8e-148 529.3 907 39.5
CsaV3_3G017640 Cucumis sativus L. HOM05D004148 ORTHO05D004709 1.9e-146 524.2 911 39.0
PGR102G2778 Punica granatum HOM05D004148 ORTHO05D004709 6.0e-145 519.2 916 39.7
ClCG05G010880 Citrullus lanatus HOM05D004148 ORTHO05D004709 5.1e-144 516.2 917 38.8
Haze_23628 Corylus avellana HOM05D004148 ORTHO05D004709 9.9e-140 501.9 467 57.6
EL10Ac7g16248 Beta vulgaris HOM05D004148 ORTHO05D004709 2.4e-138 497.3 914 38.3
AUR62020189 Chenopodium quinoa HOM05D004148 ORTHO05D004709 5.5e-138 496.1 908 37.3
GSVIVG01022379001 Vitis vinifera HOM05D004148 ORTHO05D004709 7.1e-138 495.7 610 50.3
Ah.15g099170 Amaranthus hybridus HOM05D004148 ORTHO05D004709 6.7e-136 489.2 920 37.2
THA.LOC104815063 Tarenaya hassleriana HOM05D004148 ORTHO05D004709 1.1e-135 488.4 915 37.7
MD03G1162400 Malus domestica HOM05D004148 ORTHO05D004709 2.5e-135 487.3 563 49.7
Hund18819 Selenicereus undatus HOM05D004148 ORTHO05D004709 3.7e-134 483.4 907 38.4
Sc06g0008560 Simmondsia chinensis HOM05D004148 ORTHO05D004709 2.6e-132 477.2 924 36.4
Eucgr.B03795 Eucalyptus grandis HOM05D004148 ORTHO05D004709 8.4e-131 472.2 937 37.4
Aqoxy1G00551 Aquilegia oxysepala HOM05D004148 ORTHO05D004709 2.5e-130 470.7 904 36.3
Oeu048810.1 Olea europaea HOM05D004148 ORTHO05D004709 1.2e-129 468.4 902 37.1
Solyc11g071570.3 Solanum lycopersicum HOM05D004148 ORTHO05D004709 2.1e-129 467.6 912 37.6
Cc00_g06190 Coffea canephora HOM05D004148 ORTHO05D004709 3.5e-129 466.8 918 37.1
BcaB02g10777 Brassica carinata HOM05D004148 ORTHO05D004709 2.5e-127 460.7 891 37.6
Sp5g17550 Schrenkiella parvula HOM05D004148 ORTHO05D004709 2.5e-127 460.7 917 37.2
PSO384G5014 Papaver somniferum HOM05D004148 ORTHO05D004709 9.7e-127 458.8 945 36.0
Sopen11g029250 Solanum pennellii HOM05D004148 ORTHO05D004709 1.6e-126 458.0 946 36.8
Peaxi162Scf00217g00627 Petunia axillaris HOM05D004148 ORTHO05D004709 4.8e-126 456.4 916 36.1
Hma1.2p1_0218F.1_g092390 Hydrangea macrophylla HOM05D004148 ORTHO05D004709 8.2e-126 455.7 1085 33.0
BcaC01g02217 Brassica carinata HOM05D004148 ORTHO05D004709 1.2e-124 451.8 912 37.7
PSO339G2294 Papaver somniferum HOM05D004148 ORTHO05D004709 4.5e-124 449.9 931 35.4
CAN.G439.18 Capsicum annuum HOM05D004148 ORTHO05D004709 7.6e-124 449.1 928 35.6
Thhalv10002374m.g Eutrema salsugineum HOM05D004148 ORTHO05D004709 1.0e-123 448.7 901 36.3
Lsat_1_v5_gn_5_75780 Lactuca sativa HOM05D004148 ORTHO05D004709 1.3e-123 448.4 897 36.5
A06p19850 Brassica napus HOM05D004148 ORTHO05D004709 3.8e-123 446.8 910 36.5
CSS0039701 Camellia sinensis var. sinensis HOM05D004148 ORTHO05D004709 9.4e-122 442.2 461 52.5
AT3G43610 Arabidopsis thaliana HOM05D004148 ORTHO05D004709 2.7e-121 440.7 904 35.4
BraA06t25067Z Brassica rapa HOM05D004148 ORTHO05D004709 1.8e-120 438.0 905 36.8
AL5G21540 Arabidopsis lyrata HOM05D004148 ORTHO05D004709 7.4e-119 432.6 909 36.2
ECA233G2337 Erigeron canadensis HOM05D004148 ORTHO05D004709 7.4e-119 432.6 919 35.0
BolC3t19498H Brassica oleracea HOM05D004148 ORTHO05D004709 1.1e-117 428.7 898 35.3
Nitab4.5_0000615g0090 Nicotiana tabacum HOM05D004148 ORTHO05D004709 2.4e-117 427.6 912 35.4
C03p72000 Brassica napus HOM05D004148 ORTHO05D004709 3.1e-117 427.2 909 35.3
BcaC01g01775 Brassica carinata HOM05D004148 ORTHO05D004709 1.5e-116 424.9 909 35.0
Nitab4.5_0005222g0040 Nicotiana tabacum HOM05D004148 ORTHO05D004709 2.0e-116 424.5 916 35.6
MSTRG.21311 Avicennia marina HOM05D004148 ORTHO05D004709 2.6e-116 424.1 898 34.0
Migut.D00721 Erythranthe guttata HOM05D004148 ORTHO05D004709 3.4e-116 423.7 901 36.0
CARHR108980 Cardamine hirsuta HOM05D004148 ORTHO05D004709 7.7e-116 422.5 555 47.0
Carub.0005s0948 Capsella rubella HOM05D004148 ORTHO05D004709 1.0e-115 422.2 900 35.9
HanXRQChr03g0089821 Helianthus annuus HOM05D004148 ORTHO05D004709 1.0e-115 422.2 889 35.9
Aa31LG4G13420 Aethionema arabicum HOM05D004148 ORTHO05D004709 1.2e-113 415.2 914 36.5
CSS0039756 Camellia sinensis var. sinensis HOM05D004148 ORTHO05D004709 2.1e-113 414.5 461 50.8
BolSC21t60233H Brassica oleracea HOM05D004148 ORTHO05D004709 4.1e-109 400.2 561 45.6
SalBow6G3333 Salvia bowleyana HOM05D004148 ORTHO05D004709 9.1e-109 399.1 887 35.3
ATR0697G020 Amborella trichopoda HOM05D004148 ORTHO05D004709 1.1e-103 382.1 976 33.1
HPP92_019532 Vanilla planifolia HOM05D004148 ORTHO05D004709 1.9e-90 338.2 936 32.9
CDE07G1769 Ceratophyllum demersum HOM05D004148 ORTHO05D004709 2.7e-89 334.3 458 43.9
SGA_v2.0_scaffold29G12109 Striga asiatica HOM05D004148 ORTHO05D004709 3.0e-88 330.9 929 31.9
Zm00001eb073760 Zea mays HOM05D004148 ORTHO05D004709 2.4e-85 321.2 913 30.6
Duzib168G1551 Durio zibethinus HOM05D004148 ORTHO05D004709 7.0e-85 319.7 628 38.2
MBI11_g07705_MAGBIO Magnolia biondii HOM05D004148 ORTHO05D004709 5.9e-84 316.6 929 32.0
BcaB01g00875 Brassica carinata HOM05D004148 ORTHO05D004709 3.3e-82 310.8 730 33.4
Manes.04G054800 Manihot esculenta HOM05D004148 ORTHO05D004709 8.0e-81 306.2 613 36.1
DCAR_012264 Daucus carota HOM05D000495 ORTHO05D000357 2.3e-80 304.7 372 51.1
COL.COLO4_25330 Corchorus olitorius HOM05D004148 ORTHO05D004709 2.0e-76 291.6 297 54.2
Hma1.2p1_2711F.1_g327330 Hydrangea macrophylla HOM05D004148 ORTHO05D004709 8.6e-75 286.2 440 39.5
Carub.0005s0934 Capsella rubella HOM05D004148 ORTHO05D004709 8.6e-67 259.6 297 52.2
vmacro04063 Vaccinium macrocarpon HOM05D004148 ORTHO05D004709 6.4e-62 243.4 305 47.2
FvH4_3g27031 Fragaria vesca HOM05D004148 ORTHO05D004709 1.2e-57 229.2 442 37.6
unitig_21.g20312 Utricularia gibba HOM05D004148 ORTHO05D004709 4.3e-50 204.1 345 39.1
vmacro04062 Vaccinium macrocarpon HOM05D004148 ORTHO05D004709 6.2e-49 200.3 588 32.1
SHI25296 Sapria himalayana HOM05D004148 ORTHO05D004709 1.4e-48 199.1 222 49.5
Psat6g175800 Pisum sativum HOM05D004148 ORTHO05D004709 9.2e-45 186.4 170 60.6
Os04g0566900 Oryza sativa ssp. japonica HOM05D004148 ORTHO05D004709 4.6e-44 184.1 288 40.6
A06p26680 Brassica napus HOM05D004148 ORTHO05D004709 1.5e-42 179.1 278 39.9
CiPaw.13G126900 Carya illinoinensis HOM05D004148 ORTHO05D004709 8.1e-41 173.3 476 31.5
Mapoly0099s0003 Marchantia polymorpha HOM05D004148 ORTHO05D004709 6.9e-40 170.2 495 29.1
Psat3g010920 Pisum sativum HOM05D004148 ORTHO05D004709 1.9e-37 162.2 318 36.2
Haze_23627 Corylus avellana HOM05D004148 ORTHO05D004709 6.0e-36 157.1 415 32.8
SHI25295 Sapria himalayana HOM05D004148 ORTHO05D004709 1.1e-34 152.9 183 47.0
FAN16G3212 Fragaria x ananassa HOM05D004148 ORTHO05D004709 1.5e-34 152.5 382 31.4
SEGI_35526 Sequoiadendron giganteum HOM05D004148 ORTHO05D004709 6.2e-33 147.1 290 35.9
AagrBONN_evm.TU.Sc2ySwM_228.375 Anthoceros agrestis HOM05D004148 ORTHO05D004709 1.5e-31 142.5 593 27.8
Psat6g091080 Pisum sativum HOM05D004333 ORTHO05D005363 9.9e-31 139.8 174 50.0
Zm00001eb428880 Zea mays HOM05D004148 ORTHO05D004709 3.8e-30 137.9 919 23.3
Pp3c11_24620 Physcomitrium patens HOM05D004148 ORTHO05D004709 3.5e-28 131.3 245 34.7
SEGI_18042 Sequoiadendron giganteum HOM05D004148 ORTHO05D004709 8.1e-25 120.2 721 24.3
BolC8t48007H Brassica oleracea HOM05D004148 ORTHO05D004709 1.8e-24 119.0 194 43.8
C05p34090 Brassica napus HOM05D004148 ORTHO05D004709 5.3e-24 117.5 132 52.3
Psat2g063360 Pisum sativum HOM05D004963 ORTHO05D006638 2.6e-23 115.2 117 58.1
CARHR148440 Cardamine hirsuta HOM05D004148 ORTHO05D004709 5.8e-23 114.0 120 52.5
CBR_g23077 Chara braunii HOM05D004148 ORTHO05D004709 1.6e-20 105.9 351 28.5
Psat7g117320 Pisum sativum HOM05D005390 ORTHO05D004709 3.5e-20 104.8 148 39.2
BraA06t25600Z Brassica rapa HOM05D004148 ORTHO05D004709 6.2e-17 94.0 96 51.0
BraA07t28462Z Brassica rapa HOM05D004148 ORTHO05D004709 6.9e-16 90.5 111 49.5
MD03G1162300 Malus domestica HOM05D004148 ORTHO05D004709 1.2e-15 89.7 213 34.7
A08p06640 Brassica napus HOM05D004148 ORTHO05D004709 2.0e-15 89.0 111 49.5
BraA05t21194Z Brassica rapa HOM05D004148 ORTHO05D004709 2.1e-12 79.0 111 46.8
A08p03240 Brassica napus HOM05D004148 ORTHO05D004709 3.9e-11 74.7 111 41.4
CARHR148450 Cardamine hirsuta HOM05D004148 ORTHO05D004709 3.9e-11 74.7 214 27.6
A09p33570 Brassica napus HOM05D004148 ORTHO05D004709 3.3e-10 71.6 103 41.7
A10p16420 Brassica napus HOM05D004148 ORTHO05D004709 3.3e-10 71.6 103 41.7
C06p15540 Brassica napus HOM05D004148 ORTHO05D004709 3.3e-10 71.6 103 41.7
C08p23060 Brassica napus HOM05D004148 ORTHO05D004709 3.3e-10 71.6 103 41.7
A05p23300 Brassica napus HOM05D004148 ORTHO05D004709 1.4e-08 66.2 119 41.2
SHI25294 Sapria himalayana HOM05D004148 ORTHO05D004709 2.4e-08 65.5 190 28.4
Thhalv10029231m.g Eutrema salsugineum HOM05D004148 ORTHO05D004709 7.7e-07 60.5 83 47.0
Psat3g138720 Pisum sativum HOM05D002964 ORTHO05D004709 6.5e-06 57.4 99 34.3


User provided reference genes

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