Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.S5Z5QJ Arachis hypogaea HOM05D006967 ORTHO05D008692 9.0e-298 1026.2 519 100.0
arahy.Tifrunner.gnm1.ann1.IV6A0X Arachis hypogaea HOM05D006967 ORTHO05D008692 2.0e-273 945.3 519 93.6
arahy.Tifrunner.gnm1.ann1.B3JMJ8 Arachis hypogaea HOM05D006967 ORTHO05D008692 3.9e-269 931.0 595 82.2
Lj4g0002657 Lotus japonicus HOM05D006967 ORTHO05D008692 6.6e-192 674.5 573 64.2
Lalb_Chr09g0334571 Lupinus albus HOM05D006967 ORTHO05D008692 5.2e-189 664.8 573 63.5
Glyma.16G096000 Glycine max HOM05D006967 ORTHO05D008692 2.0e-188 662.9 569 62.2
Phvul.003G274600 Phaseolus vulgaris HOM05D006967 ORTHO05D008692 1.5e-180 636.7 570 59.8
Medtr8g070630 Medicago truncatula HOM05D006967 ORTHO05D008692 3.8e-171 605.5 568 58.1
TPR.G19829 Trifolium pratense HOM05D006967 ORTHO05D008692 2.2e-163 579.7 570 56.5
VMungo0251G0412 Vigna mungo HOM05D006967 ORTHO05D008692 1.5e-140 503.8 435 60.9
Haze_05177 Corylus avellana HOM05D006967 ORTHO05D008692 1.3e-134 484.2 568 48.2
CiPaw.09G141400 Carya illinoinensis HOM05D006967 ORTHO05D008692 7.7e-132 474.9 567 47.3
Manes.18G124500 Manihot esculenta HOM05D006967 ORTHO05D008692 4.8e-126 455.7 563 46.2
Potri.003G157800 Populus trichocarpa HOM05D006967 ORTHO05D008692 2.4e-125 453.4 566 46.1
Duzib177G0925 Durio zibethinus HOM05D006967 ORTHO05D008692 1.9e-122 443.7 523 47.8
Thecc.05G313500 Theobroma cacao HOM05D006967 ORTHO05D008692 8.8e-120 434.9 564 46.3
QL11p010599 Quercus lobata HOM05D006967 ORTHO05D008692 1.0e-115 421.4 534 45.9
RcHm_v2.0_Chr5g0022471 Rosa chinensis HOM05D006967 ORTHO05D008692 2.2e-115 420.2 574 44.8
Sabra03G0114400 Salix brachista HOM05D006967 ORTHO05D008692 8.5e-115 418.3 496 47.4
Gohir.A13G109700 Gossypium hirsutum HOM05D006967 ORTHO05D008692 9.5e-114 414.8 530 44.5
Gorai.013G126100 Gossypium raimondii HOM05D006967 ORTHO05D008692 1.4e-112 411.0 533 44.3
TWI63G0275 Tripterygium wilfordii HOM05D006967 ORTHO05D008692 5.2e-112 409.1 562 44.5
Gohir.D13G112300 Gossypium hirsutum HOM05D006967 ORTHO05D008692 2.0e-111 407.1 502 45.6
MD10G1221200 Malus domestica HOM05D006967 ORTHO05D008692 1.8e-109 400.6 570 43.2
CAN.G40.7 Capsicum annuum HOM05D006967 ORTHO05D008692 3.1e-109 399.8 569 40.8
Sopen01g015960 Solanum pennellii HOM05D006967 ORTHO05D008692 4.5e-108 396.0 566 40.3
CANSAT35G1213 Cannabis sativa HOM05D006967 ORTHO05D008692 2.3e-107 393.7 559 42.2
DCAR_004368 Daucus carota HOM05D006967 ORTHO05D008692 2.8e-105 386.7 554 41.3
FAN11G3906 Fragaria x ananassa HOM05D006967 ORTHO05D008692 4.7e-105 386.0 569 42.9
FvH4_3g13520 Fragaria vesca HOM05D006967 ORTHO05D008692 2.3e-104 383.6 569 42.9
CSS0034338 Camellia sinensis var. sinensis HOM05D006967 ORTHO05D008692 1.2e-103 381.3 449 47.9
Eucgr.E04333 Eucalyptus grandis HOM05D006967 ORTHO05D008692 2.0e-103 380.6 499 44.9
FAN25G2282 Fragaria x ananassa HOM05D006967 ORTHO05D008692 1.3e-102 377.9 569 42.0
Hund09497 Selenicereus undatus HOM05D006967 ORTHO05D008692 1.3e-102 377.9 537 42.5
Aqoxy1G01340 Aquilegia oxysepala HOM05D006967 ORTHO05D008692 4.9e-102 375.9 563 41.6
vmacro03578 Vaccinium macrocarpon HOM05D006967 ORTHO05D008692 6.4e-102 375.6 618 39.3
FAN21G4071 Fragaria x ananassa HOM05D006967 ORTHO05D008692 1.2e-100 371.3 581 41.5
Sed0023777 Sechium edule HOM05D006967 ORTHO05D008692 1.0e-99 368.2 559 40.4
EL10Ac5g10560 Beta vulgaris HOM05D006967 ORTHO05D008692 1.7e-99 367.5 609 38.8
Oeu008739.3 Olea europaea HOM05D006967 ORTHO05D008692 5.0e-99 365.9 499 41.7
PSO675G8399 Papaver somniferum HOM05D006967 ORTHO05D008692 8.6e-99 365.2 567 39.0
Solyc01g049910.4 Solanum lycopersicum HOM05D006967 ORTHO05D008692 1.1e-98 364.8 503 41.9
Cc09_g04480 Coffea canephora HOM05D006967 ORTHO05D008692 2.5e-98 363.6 501 42.5
Prupe.4G123400 Prunus persica HOM05D006967 ORTHO05D008692 3.3e-98 363.2 392 50.0
PSO541G0117 Papaver somniferum HOM05D006967 ORTHO05D008692 1.2e-97 361.3 561 39.2
MSTRG.24877 Avicennia marina HOM05D006967 ORTHO05D008692 6.2e-97 359.0 557 39.1
Sopen01g019010 Solanum pennellii HOM05D006967 ORTHO05D008692 4.0e-96 356.3 699 34.9
MBI10_g30431_MAGBIO Magnolia biondii HOM05D006967 ORTHO05D008692 8.9e-96 355.1 449 44.5
CsaV3_5G000140 Cucumis sativus L. HOM05D006967 ORTHO05D008692 1.2e-95 354.8 549 39.5
Aa31LG6G2720 Aethionema arabicum HOM05D006967 ORTHO05D008692 2.0e-95 354.0 569 37.8
MELO3C005917.2 Cucumis melo HOM05D006967 ORTHO05D008692 1.7e-94 350.9 554 39.7
Sp7g18650 Schrenkiella parvula HOM05D006967 ORTHO05D008692 4.9e-94 349.4 580 38.8
THA.LOC104806234 Tarenaya hassleriana HOM05D006967 ORTHO05D008692 6.4e-94 349.0 574 39.2
Migut.K01517 Erythranthe guttata HOM05D006967 ORTHO05D008692 3.2e-93 346.7 561 39.8
Migut.M02039 Erythranthe guttata HOM05D006967 ORTHO05D008692 9.2e-93 345.1 556 39.7
BcaNung03720 Brassica carinata HOM05D006967 ORTHO05D008692 1.2e-92 344.7 512 41.0
Cpa.g.sc30.57 Carica papaya HOM05D006967 ORTHO05D008692 1.2e-92 344.7 493 43.4
AL7G33600 Arabidopsis lyrata HOM05D006967 ORTHO05D008692 7.8e-92 342.0 561 39.0
BraA01t01143Z Brassica rapa HOM05D006967 ORTHO05D008692 7.8e-92 342.0 577 39.2
ECA238G0649 Erigeron canadensis HOM05D006967 ORTHO05D008692 7.8e-92 342.0 552 39.5
HanXRQChr14g0439851 Helianthus annuus HOM05D006967 ORTHO05D008692 1.3e-91 341.3 555 38.7
A01p12010 Brassica napus HOM05D006967 ORTHO05D008692 2.3e-91 340.5 506 41.7
Lj2A340G21 Lonicera japonica HOM05D006967 ORTHO05D008692 3.9e-91 339.7 435 44.1
ClCG01G000040 Citrullus lanatus HOM05D006967 ORTHO05D008692 1.9e-90 337.4 507 39.8
C01p14260 Brassica napus HOM05D006967 ORTHO05D008692 3.3e-90 336.7 506 41.1
Carub.0007s2087 Capsella rubella HOM05D006967 ORTHO05D008692 3.3e-90 336.7 572 38.1
BcaC09g51322 Brassica carinata HOM05D006967 ORTHO05D008692 5.6e-90 335.9 506 40.9
BolC1t01391H Brassica oleracea HOM05D006967 ORTHO05D008692 9.5e-90 335.1 505 40.6
Thhalv10024898m.g Eutrema salsugineum HOM05D006967 ORTHO05D008692 6.2e-89 332.4 511 40.5
Nn7g38428 Nelumbo nucifera HOM05D006967 ORTHO05D008692 4.0e-88 329.7 398 45.2
Nitab4.5_0000217g0010 Nicotiana tabacum HOM05D006967 ORTHO05D008692 1.2e-87 328.2 457 40.9
BcaNung03721 Brassica carinata HOM05D006967 ORTHO05D008692 3.4e-87 326.6 512 39.3
Peaxi162Scf00715g00310 Petunia axillaris HOM05D006967 ORTHO05D008692 5.8e-87 325.9 500 38.6
FAN16G1037 Fragaria x ananassa HOM05D006967 ORTHO05D008692 4.9e-86 322.8 524 40.6
SGA_v2.0_scaffold62G21391 Striga asiatica HOM05D006967 ORTHO05D008692 3.2e-85 320.1 533 40.2
Psat4g112640 Pisum sativum HOM05D006967 ORTHO05D008692 1.6e-84 317.8 234 68.4
Dinv05283 Davidia involucrata HOM05D006967 ORTHO05D008692 9.5e-82 308.5 446 41.3
Solyc01g020520.4 Solanum lycopersicum HOM05D006967 ORTHO05D008692 9.5e-82 308.5 393 42.5
Rhsim13G0136900 Rhododendron simsii HOM05D006967 ORTHO05D008692 8.1e-81 305.4 484 39.0
Migut.G00899 Erythranthe guttata HOM05D006967 ORTHO05D008692 4.4e-79 299.7 450 40.7
AT4G20310 Arabidopsis thaliana HOM05D006967 ORTHO05D008692 9.9e-79 298.5 388 43.3
Nitab4.5_0001253g0030 Nicotiana tabacum HOM05D006967 ORTHO05D008692 9.9e-79 298.5 423 40.0
SEGI_11534 Sequoiadendron giganteum HOM05D006967 ORTHO05D008692 8.4e-78 295.4 578 32.5
COL.COLO4_10527 Corchorus olitorius HOM05D001999 ORTHO05D001994 9.2e-77 292.0 419 43.9
SHI28117 Sapria himalayana HOM05D006967 ORTHO05D008692 9.2e-77 292.0 572 35.8
ATR0737G179 Amborella trichopoda HOM05D006967 ORTHO05D008692 2.7e-76 290.4 448 38.6
HPP92_009939 Vanilla planifolia HOM05D006967 ORTHO05D008692 3.9e-75 286.6 502 35.9
AUR62032339 Chenopodium quinoa HOM05D006967 ORTHO05D008692 1.5e-74 284.6 392 43.9
CARHR227130 Cardamine hirsuta HOM05D006967 ORTHO05D008692 4.7e-73 279.6 395 41.8
Ciclev10015668m.g Citrus clementina HOM05D006967 ORTHO05D008692 3.6e-65 253.4 410 39.0
AUR62028614 Chenopodium quinoa HOM05D006967 ORTHO05D008692 1.1e-64 251.9 443 37.9
Sc05g0001460 Simmondsia chinensis HOM05D006967 ORTHO05D008692 1.2e-63 248.4 408 37.3
TAR624G1073 Trochodendron aralioides HOM05D006967 ORTHO05D008692 1.3e-62 245.0 273 47.6
PGSC0003DMG402016926 Solanum tuberosum HOM05D006967 ORTHO05D008692 8.7e-59 232.3 278 45.0
Ah.11g050600 Amaranthus hybridus HOM05D006967 ORTHO05D008692 1.3e-57 228.4 402 37.1
Ca_22538_v3 Cicer arietinum L. HOM05D006967 ORTHO05D008692 1.1e-56 225.3 273 48.0
Os01g0654200 Oryza sativa ssp. japonica HOM05D006967 ORTHO05D008692 1.2e-44 185.3 326 35.0
Zm00001eb158090 Zea mays HOM05D006967 ORTHO05D008692 1.5e-42 178.3 477 29.1
TAR624G0936 Trochodendron aralioides HOM05D006967 ORTHO05D008692 1.3e-38 165.2 231 45.0
Potri.001G073200 Populus trichocarpa HOM05D006967 ORTHO05D008692 2.2e-38 164.5 216 43.1
AagrBONN_evm.TU.Sc2ySwM_368.2736 Anthoceros agrestis HOM05D006967 ORTHO05D008692 2.1e-36 157.9 514 25.7
CAN.G40.9 Capsicum annuum HOM05D006967 ORTHO05D008692 3.2e-21 107.5 193 34.7
SMO176G0004 Selaginella moellendorffii HOM05D006967 ORTHO05D008692 3.6e-20 104.0 379 24.5
Psat4g112600 Pisum sativum HOM05D006967 ORTHO05D008692 2.8e-17 94.4 154 41.6
CBR_g19989 Chara braunii HOM05D006967 ORTHO05D008692 1.7e-14 85.1 236 27.5
Psat6g225040 Pisum sativum HOM05D006967 ORTHO05D008692 1.5e-13 82.0 69 60.9
CBR_g19993 Chara braunii HOM05D006967 ORTHO05D008692 5.5e-13 80.1 235 26.4
AUR62032338 Chenopodium quinoa HOM05D006967 ORTHO05D008692 4.0e-11 73.9 140 37.9
AUR62028613 Chenopodium quinoa HOM05D006967 ORTHO05D008692 8.8e-11 72.8 118 41.5
SMO365G0010 Selaginella moellendorffii HOM05D006967 ORTHO05D008692 4.4e-10 70.5 181 29.3
HPP92_007230 Vanilla planifolia HOM05D006967 ORTHO05D008692 1.7e-09 68.6 140 31.4


User provided reference genes

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