Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.S5BZSG Arachis hypogaea HOM05D001104 ORTHO05D006624 7.5e-261 903.3 443 100.0
arahy.Tifrunner.gnm1.ann1.PA6DSG Arachis hypogaea HOM05D001104 ORTHO05D006624 3.0e-241 838.2 443 94.4
Medtr6g007040 Medicago truncatula HOM05D001104 ORTHO05D006624 3.6e-207 724.9 441 79.4
Phvul.004G013700 Phaseolus vulgaris HOM05D001104 ORTHO05D006624 5.8e-205 717.6 445 78.9
Glyma.19G007900 Glycine max HOM05D001104 ORTHO05D006624 2.2e-204 715.7 445 79.6
VMungo0464G0407 Vigna mungo HOM05D001104 ORTHO05D006624 2.7e-202 708.8 444 77.3
Lj2g0012499 Lotus japonicus HOM05D001104 ORTHO05D006624 4.5e-197 691.4 445 76.6
Lalb_Chr06g0176011 Lupinus albus HOM05D001104 ORTHO05D006624 1.1e-195 686.8 430 77.2
Ca_04192_v3 Cicer arietinum L. HOM05D001104 ORTHO05D006624 1.4e-195 686.4 442 75.8
Cpa.g.sc215.8 Carica papaya HOM05D001104 ORTHO05D006624 1.3e-193 679.9 446 73.1
CsaV3_5G027380 Cucumis sativus L. HOM05D001104 ORTHO05D006624 4.3e-192 674.9 448 73.0
MELO3C021546.2 Cucumis melo HOM05D001104 ORTHO05D006624 8.2e-191 670.6 448 72.8
Atru.chr6.2305 Acer truncatum HOM05D001104 ORTHO05D006624 9.0e-190 667.2 446 72.4
Dinv35069 Davidia involucrata HOM05D001104 ORTHO05D006624 9.0e-190 667.2 446 71.7
Ciclev10015353m.g Citrus clementina HOM05D001104 ORTHO05D006624 2.9e-188 662.1 446 70.9
Sed0005946 Sechium edule HOM05D001104 ORTHO05D006624 2.9e-188 662.1 446 71.3
Rhsim10G0021500 Rhododendron simsii HOM05D001104 ORTHO05D006624 1.4e-187 659.8 446 70.0
TWI12G0063 Tripterygium wilfordii HOM05D001104 ORTHO05D006624 2.5e-187 659.1 446 70.6
Hma1.2p1_0993F.1_g245480 Hydrangea macrophylla HOM05D001104 ORTHO05D006624 4.2e-187 658.3 446 71.1
Haze_14675 Corylus avellana HOM05D001104 ORTHO05D006624 7.1e-187 657.5 443 71.8
CiPaw.03G038600 Carya illinoinensis HOM05D001104 ORTHO05D006624 2.7e-186 655.6 446 70.6
CSS0039746 Camellia sinensis var. sinensis HOM05D001104 ORTHO05D006624 3.5e-186 655.2 446 70.4
Actinidia06020 Actinidia chinensis HOM05D001104 ORTHO05D006624 4.6e-186 654.8 446 71.1
Dinv33487 Davidia involucrata HOM05D001104 ORTHO05D006624 6.0e-186 654.4 443 70.7
TAR374G1405 Trochodendron aralioides HOM05D001104 ORTHO05D006624 6.7e-185 651.0 446 69.7
Thecc.04G010000 Theobroma cacao HOM05D001104 ORTHO05D006624 8.7e-185 650.6 446 70.0
Potri.001G348700 Populus trichocarpa HOM05D001104 ORTHO05D006624 1.1e-184 650.2 446 70.6
Prupe.3G285400 Prunus persica HOM05D001104 ORTHO05D006624 5.7e-184 647.9 455 69.7
Eucgr.I01793 Eucalyptus grandis HOM05D001104 ORTHO05D006624 7.4e-184 647.5 447 69.8
CSS0024274 Camellia sinensis var. sinensis HOM05D001104 ORTHO05D006624 9.7e-184 647.1 450 69.6
Duzib147G0036 Durio zibethinus HOM05D001104 ORTHO05D006624 9.7e-184 647.1 445 70.3
Nitab4.5_0001709g0040 Nicotiana tabacum HOM05D001104 ORTHO05D006624 1.3e-183 646.7 432 71.3
Cc07_g02180 Coffea canephora HOM05D001104 ORTHO05D006624 8.2e-183 644.0 446 69.1
CAN.G973.9 Capsicum annuum HOM05D001104 ORTHO05D006624 1.1e-182 643.7 432 70.6
Migut.H00115 Erythranthe guttata HOM05D001104 ORTHO05D006624 9.0e-182 640.6 439 69.7
Solyc02g067740.4 Solanum lycopersicum HOM05D001104 ORTHO05D006624 1.5e-181 639.8 433 70.7
Oeu062922.1 Olea europaea HOM05D001104 ORTHO05D006624 1.7e-180 636.3 432 69.2
Sopen02g016860 Solanum pennellii HOM05D001104 ORTHO05D006624 2.9e-180 635.6 433 70.2
PGSC0003DMG400006955 Solanum tuberosum HOM05D001104 ORTHO05D006624 5.0e-180 634.8 433 70.4
Actinidia35743 Actinidia chinensis HOM05D001104 ORTHO05D006624 1.4e-179 633.3 446 68.4
MD17G1034200 Malus domestica HOM05D001104 ORTHO05D006624 1.9e-179 632.9 467 66.0
MSTRG.15512 Avicennia marina HOM05D001104 ORTHO05D006624 1.2e-178 630.2 446 66.4
QL02p076349 Quercus lobata HOM05D001104 ORTHO05D006624 2.7e-178 629.0 450 68.7
SalBow1G5303 Salvia bowleyana HOM05D001104 ORTHO05D006624 2.8e-175 619.0 448 67.9
Gorai.001G262300 Gossypium raimondii HOM05D001104 ORTHO05D006624 3.7e-175 618.6 446 66.1
GSVIVG01032469001 Vitis vinifera HOM05D001104 ORTHO05D006624 3.7e-175 618.6 446 66.4
vmacro05831 Vaccinium macrocarpon HOM05D001104 ORTHO05D006624 1.4e-174 616.7 454 65.9
RcHm_v2.0_Chr2g0171701 Rosa chinensis HOM05D001104 ORTHO05D006624 4.1e-174 615.1 461 66.6
Nn4g22776 Nelumbo nucifera HOM05D001104 ORTHO05D006624 6.9e-174 614.4 442 65.2
ClCG09G018970 Citrullus lanatus HOM05D001104 ORTHO05D006624 9.1e-174 614.0 498 62.4
COL.COLO4_28978 Corchorus olitorius HOM05D001104 ORTHO05D006624 1.0e-172 610.5 469 64.8
CANSAT64G0855 Cannabis sativa HOM05D001104 ORTHO05D006624 2.2e-172 609.4 446 66.6
Gohir.A07G220700 Gossypium hirsutum HOM05D001104 ORTHO05D006624 2.2e-172 609.4 446 65.2
FAN14G0697 Fragaria x ananassa HOM05D001104 ORTHO05D006624 9.4e-171 604.0 460 65.0
FvH4_6g50760 Fragaria vesca HOM05D001104 ORTHO05D006624 1.2e-170 603.6 460 65.0
Cfa007422 Carpinus fangiana HOM05D001104 ORTHO05D006624 6.1e-170 601.3 410 71.5
ECA232G2826 Erigeron canadensis HOM05D001104 ORTHO05D006624 1.4e-169 600.1 439 64.7
FAN05G2035 Fragaria x ananassa HOM05D001104 ORTHO05D006624 1.4e-169 600.1 460 64.3
Lj7C592G4 Lonicera japonica HOM05D001104 ORTHO05D006624 1.4e-169 600.1 432 66.7
THA.LOC104825337 Tarenaya hassleriana HOM05D001104 ORTHO05D006624 1.4e-169 600.1 449 65.5
Peaxi162Scf00933g00005 Petunia axillaris HOM05D001104 ORTHO05D006624 1.8e-169 599.7 412 69.2
ECA238G2799 Erigeron canadensis HOM05D001104 ORTHO05D006624 3.0e-169 599.0 439 64.2
PGR142G0881 Punica granatum HOM05D001104 ORTHO05D006624 1.1e-168 597.0 436 66.1
HanXRQChr09g0266171 Helianthus annuus HOM05D001104 ORTHO05D006624 2.0e-168 596.3 432 64.8
PSO478G3469 Papaver somniferum HOM05D001104 ORTHO05D006624 2.0e-168 596.3 444 65.8
Hma1.2p1_3249F.1_g334430 Hydrangea macrophylla HOM05D001104 ORTHO05D006624 4.4e-168 595.1 414 69.3
HanXRQChr14g0450311 Helianthus annuus HOM05D001104 ORTHO05D006624 4.8e-167 591.7 445 62.5
MD09G1032600 Malus domestica HOM05D001104 ORTHO05D006624 9.1e-166 587.4 468 63.0
DCAR_011201 Daucus carota HOM05D001104 ORTHO05D006624 1.5e-165 586.6 415 67.0
Sp2g16980 Schrenkiella parvula HOM05D001104 ORTHO05D006624 2.2e-164 582.8 448 63.8
BcaC06g30950 Brassica carinata HOM05D001104 ORTHO05D006624 3.8e-164 582.0 449 63.7
DCAR_015045 Daucus carota HOM05D001104 ORTHO05D006624 6.5e-164 581.3 472 60.6
BcaC06g33770 Brassica carinata HOM05D001104 ORTHO05D006624 1.9e-163 579.7 448 63.8
C07p37130 Brassica napus HOM05D001104 ORTHO05D006624 1.9e-163 579.7 448 63.8
Aqoxy3G01030 Aquilegia oxysepala HOM05D001104 ORTHO05D006624 1.2e-162 577.0 433 65.1
Gohir.D07G227400 Gossypium hirsutum HOM05D001104 ORTHO05D006624 1.6e-162 576.6 414 65.9
Thhalv10004293m.g Eutrema salsugineum HOM05D001104 ORTHO05D006624 1.0e-161 573.9 447 64.7
AL5G17430 Arabidopsis lyrata HOM05D001104 ORTHO05D006624 5.7e-160 568.2 433 63.7
CARHR149500 Cardamine hirsuta HOM05D001104 ORTHO05D006624 1.4e-158 563.5 452 62.8
AT3G27930 Arabidopsis thaliana HOM05D001104 ORTHO05D006624 7.0e-158 561.2 433 63.3
Carub.0005s0650 Capsella rubella HOM05D001104 ORTHO05D006624 1.0e-156 557.4 447 62.0
MBI16_g05636_MAGBIO Magnolia biondii HOM05D001104 ORTHO05D006624 2.9e-156 555.8 414 63.3
PSO017G6424 Papaver somniferum HOM05D001104 ORTHO05D006624 1.5e-155 553.5 442 62.2
SGA_v2.0_scaffold135G34875 Striga asiatica HOM05D001104 ORTHO05D006624 4.2e-155 552.0 386 69.4
FAN02G3192 Fragaria x ananassa HOM05D001104 ORTHO05D006624 7.2e-155 551.2 495 57.4
Lsat_1_v5_gn_4_182480 Lactuca sativa HOM05D001104 ORTHO05D006624 4.4e-152 542.0 432 61.8
EL10Ac4g08579 Beta vulgaris HOM05D001104 ORTHO05D006624 1.7e-151 540.0 440 59.3
Aa31LG2G4840 Aethionema arabicum HOM05D001104 ORTHO05D006285 3.8e-148 528.9 391 66.0
ATR0730G148 Amborella trichopoda HOM05D001104 ORTHO05D006624 6.5e-148 528.1 448 57.6
Psat1g057160 Pisum sativum HOM05D001104 ORTHO05D006624 4.2e-147 525.4 319 79.9
Os05g0577800 Oryza sativa ssp. japonica HOM05D001104 ORTHO05D006624 2.7e-146 522.7 442 56.3
Sc03g0007930 Simmondsia chinensis HOM05D001104 ORTHO05D006624 4.0e-145 518.8 341 70.4
CSS0016338 Camellia sinensis var. sinensis HOM05D001104 ORTHO05D006624 5.9e-141 505.0 459 58.2
Manes.17G117000 Manihot esculenta HOM05D001104 ORTHO05D006624 7.7e-141 504.6 344 70.6
CDE06G1183 Ceratophyllum demersum HOM05D001104 ORTHO05D006624 1.8e-134 483.4 443 54.9
Oeu043054.1 Olea europaea HOM05D001104 ORTHO05D006285 2.9e-132 476.1 405 58.3
HPP92_024321 Vanilla planifolia HOM05D001104 ORTHO05D006285 6.6e-132 474.9 376 59.0
Nitab4.5_0001125g0070 Nicotiana tabacum HOM05D001104 ORTHO05D006624 2.5e-131 473.0 434 56.5
BcaC03g17495 Brassica carinata HOM05D001104 ORTHO05D006624 1.4e-126 457.2 416 57.2
vmacro18250 Vaccinium macrocarpon HOM05D001104 ORTHO05D006624 1.9e-126 456.8 443 53.5
CSS0012459 Camellia sinensis var. sinensis HOM05D001104 ORTHO05D006624 5.0e-124 448.7 455 53.2
unitig_899.g15491 Utricularia gibba HOM05D000928 ORTHO05D001186 1.1e-121 441.0 417 52.0
Os05g0577900 Oryza sativa ssp. japonica HOM05D001104 ORTHO05D006624 2.1e-117 426.8 435 49.9
A06p40770 Brassica napus HOM05D001104 ORTHO05D006624 4.4e-112 409.1 290 68.3
BolC7t44224H Brassica oleracea HOM05D001104 ORTHO05D006624 5.8e-112 408.7 289 68.5
BraA06t26998Z Brassica rapa HOM05D001104 ORTHO05D006624 1.3e-111 407.5 289 68.2
AUR62029365 Chenopodium quinoa HOM05D001104 ORTHO05D006624 6.8e-105 385.2 327 57.5
C02p54520 Brassica napus HOM05D001104 ORTHO05D006624 5.8e-104 382.1 443 48.3
C02p54570 Brassica napus HOM05D001104 ORTHO05D006624 1.1e-99 367.9 463 46.0
Rhsim08G0054100 Rhododendron simsii HOM05D001104 ORTHO05D006285 6.2e-98 362.1 440 47.0
AagrBONN_evm.TU.Sc2ySwM_340.221 Anthoceros agrestis HOM05D001104 ORTHO05D006624 1.1e-94 351.3 441 41.7
TPR.G2265 Trifolium pratense HOM05D001104 ORTHO05D006624 6.0e-93 345.5 205 75.6
Pp3c25_9610 Physcomitrium patens HOM05D001104 ORTHO05D006624 1.3e-92 344.4 449 41.9
AUR62043218 Chenopodium quinoa HOM05D001104 ORTHO05D006624 3.0e-92 343.2 441 44.0
BolC2t11515H Brassica oleracea HOM05D001104 ORTHO05D006624 1.7e-87 327.4 643 35.0
HanXRQChr06g0175561 Helianthus annuus HOM05D001104 ORTHO05D006624 2.7e-85 320.1 287 55.7
Zm00001eb344500 Zea mays HOM05D001104 ORTHO05D006624 6.0e-85 318.9 290 55.5
A02p35680 Brassica napus HOM05D001104 ORTHO05D006624 9.6e-75 285.0 710 30.4
Hund10304 Selenicereus undatus HOM05D001104 ORTHO05D006624 1.4e-73 281.2 278 52.5
Psat0s3401g0080 Pisum sativum HOM05D001104 ORTHO05D006624 2.0e-64 250.8 165 77.0
BraA02t08571Z Brassica rapa HOM05D001104 ORTHO05D006624 3.7e-58 229.9 528 32.0
BolC2t11520H Brassica oleracea HOM05D001104 ORTHO05D006624 5.3e-57 226.1 312 44.9
Cfa008567 Carpinus fangiana HOM05D001104 ORTHO05D006624 4.7e-45 186.4 163 58.9
Glyma.05G007402 Glycine max HOM05D001104 ORTHO05D006624 1.6e-40 171.4 93 88.2
A06p40780 Brassica napus HOM05D001104 ORTHO05D006624 9.4e-38 162.2 142 55.6
Psat1g219520 Pisum sativum HOM05D001104 ORTHO05D006624 3.6e-37 160.2 90 88.9
SEGI_13753 Sequoiadendron giganteum HOM05D001104 ORTHO05D006624 8.8e-36 155.6 147 48.3
BraA02t08570Z Brassica rapa HOM05D001104 ORTHO05D006624 4.4e-35 153.3 140 54.3
Oeu043225.1 Olea europaea HOM05D003428 ORTHO05D006624 4.8e-34 149.8 285 32.6
Oeu051906.1 Olea europaea HOM05D003428 ORTHO05D006624 1.4e-33 148.3 285 32.6
Thecc.04G111800 Theobroma cacao HOM05D001104 ORTHO05D006624 6.8e-20 102.8 82 54.9
Actinidia36089 Actinidia chinensis HOM05D001104 ORTHO05D006624 6.4e-18 96.3 95 57.9
Cfa008566 Carpinus fangiana HOM05D001104 ORTHO05D006624 1.8e-17 94.7 67 70.1
HanXRQChr16g0517041 Helianthus annuus HOM05D001104 ORTHO05D006624 3.5e-16 90.5 67 61.2
BcaB07g30139 Brassica carinata HOM05D001104 ORTHO05D006624 5.6e-14 83.2 55 70.9
SEGI_37884 Sequoiadendron giganteum HOM05D001104 ORTHO05D006624 4.7e-13 80.1 74 47.3
Cre08.g358552 Chlamydomonas reinhardtii HOM05D001104 ORTHO05D006624 2.9e-10 70.9 134 32.8
TPR.G18830 Trifolium pratense HOM05D001104 ORTHO05D006624 1.9e-09 68.2 64 59.4
Sopen07g006450 Solanum pennellii HOM05D001104 ORTHO05D006624 3.5e-08 63.9 43 62.8
SEGI_12261 Sequoiadendron giganteum HOM05D001104 ORTHO05D006624 3.9e-07 60.5 90 37.8


User provided reference genes

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