Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.RYM43V Arachis hypogaea HOM05D003767 ORTHO05D004507 0.0e+00 1130.5 565 100.0
arahy.Tifrunner.gnm1.ann1.1T3PYK Arachis hypogaea HOM05D003767 ORTHO05D004507 0.0e+00 1109.0 571 97.7
Lalb_Chr18g0045501 Lupinus albus HOM05D003767 ORTHO05D004507 5.5e-232 807.7 585 72.6
TPR.G33164 Trifolium pratense HOM05D003767 ORTHO05D004507 4.9e-225 784.6 498 78.9
Glyma.19G237900 Glycine max HOM05D003767 ORTHO05D004507 4.2e-224 781.6 502 77.5
Medtr7g113890 Medicago truncatula HOM05D003767 ORTHO05D004507 9.3e-224 780.4 532 75.2
Phvul.006G094700 Phaseolus vulgaris HOM05D003767 ORTHO05D004507 4.6e-223 778.1 502 77.7
Lj1g0000488 Lotus japonicus HOM05D003767 ORTHO05D004507 3.9e-222 775.0 570 69.6
Lj1g0009738 Lotus japonicus HOM05D003767 ORTHO05D004507 3.9e-222 775.0 496 78.6
Glyma.19G237800 Glycine max HOM05D003767 ORTHO05D004507 1.9e-221 772.7 504 77.4
Phvul.006G094600 Phaseolus vulgaris HOM05D003767 ORTHO05D004507 3.4e-218 761.9 562 70.3
TPR.G33204 Trifolium pratense HOM05D003767 ORTHO05D004507 2.2e-217 759.2 558 68.6
Ca_09376_v3 Cicer arietinum L. HOM05D003767 ORTHO05D004507 3.9e-214 748.4 496 77.2
TAR365G0614 Trochodendron aralioides HOM05D003767 ORTHO05D004507 3.9e-214 748.4 584 67.0
GSVIVG01022056001 Vitis vinifera HOM05D003767 ORTHO05D004507 8.7e-214 747.3 488 75.0
CANSAT54G0870 Cannabis sativa HOM05D003767 ORTHO05D004507 7.4e-213 744.2 556 69.1
Prupe.6G331000 Prunus persica HOM05D003767 ORTHO05D004507 8.2e-212 740.7 517 71.6
Glyma.03G240600 Glycine max HOM05D003767 ORTHO05D004507 1.2e-210 736.9 556 68.2
Cfa006539 Carpinus fangiana HOM05D003767 ORTHO05D004507 3.4e-210 735.3 522 71.3
Ciclev10000728m.g Citrus clementina HOM05D003767 ORTHO05D004507 1.3e-209 733.4 539 69.4
Glyma.19G237700 Glycine max HOM05D003767 ORTHO05D004507 1.3e-209 733.4 561 66.0
Phvul.006G094500 Phaseolus vulgaris HOM05D003767 ORTHO05D004507 1.2e-207 726.9 555 66.8
Duzib147G0043 Durio zibethinus HOM05D003767 ORTHO05D004507 2.1e-207 726.1 503 71.4
CiPaw.08G167300 Carya illinoinensis HOM05D003767 ORTHO05D004507 2.7e-207 725.7 512 70.7
Potri.013G026800 Populus trichocarpa HOM05D003767 ORTHO05D004507 2.3e-206 722.6 500 70.6
QL03p004251 Quercus lobata HOM05D003767 ORTHO05D004507 3.9e-206 721.8 586 64.8
Thecc.02G212900 Theobroma cacao HOM05D003767 ORTHO05D004507 3.9e-206 721.8 532 68.4
Ca_09375_v3 Cicer arietinum L. HOM05D003767 ORTHO05D004507 6.7e-206 721.1 502 71.9
Medtr7g113880 Medicago truncatula HOM05D003767 ORTHO05D004507 1.5e-205 719.9 572 64.3
AUR62000859 Chenopodium quinoa HOM05D003767 ORTHO05D004507 2.0e-205 719.5 532 68.8
Gohir.A11G224810 Gossypium hirsutum HOM05D003767 ORTHO05D004507 2.0e-205 719.5 565 65.8
Psat3g009920 Pisum sativum HOM05D003767 ORTHO05D004507 4.4e-205 718.4 555 66.1
Potri.005G038100 Populus trichocarpa HOM05D003767 ORTHO05D004507 4.4e-205 718.4 519 68.4
VMungo0540G2084 Vigna mungo HOM05D003767 ORTHO05D004507 5.7e-205 718.0 504 72.4
DCAR_029443 Daucus carota HOM05D003767 ORTHO05D004507 1.3e-204 716.8 526 68.6
PSO832G1867 Papaver somniferum HOM05D003767 ORTHO05D004507 1.3e-204 716.8 586 64.7
vmacro05036 Vaccinium macrocarpon HOM05D003767 ORTHO05D004507 1.3e-204 716.8 569 65.2
Actinidia23606 Actinidia chinensis HOM05D003767 ORTHO05D004507 1.7e-204 716.5 520 69.6
Manes.09G162900 Manihot esculenta HOM05D003767 ORTHO05D004507 1.7e-204 716.5 500 70.6
Sc09g0003380 Simmondsia chinensis HOM05D003767 ORTHO05D004507 1.7e-204 716.5 557 66.1
DCAR_005538 Daucus carota HOM05D003767 ORTHO05D004507 3.7e-204 715.3 526 68.6
Gohir.D11G232600 Gossypium hirsutum HOM05D003767 ORTHO05D004507 4.8e-204 714.9 565 65.3
Manes.08G123500 Manihot esculenta HOM05D003767 ORTHO05D004507 8.2e-204 714.1 506 69.4
Gorai.003G066300 Gossypium raimondii HOM05D003767 ORTHO05D004507 1.4e-203 713.4 569 65.2
Hma1.2p1_0666F.1_g199390 Hydrangea macrophylla HOM05D003767 ORTHO05D004507 1.8e-203 713.0 523 67.9
TWI56G0745 Tripterygium wilfordii HOM05D003767 ORTHO05D004507 5.3e-203 711.4 555 65.4
Sopen01g042160 Solanum pennellii HOM05D003767 ORTHO05D004507 1.2e-202 710.3 576 65.1
RcHm_v2.0_Chr3g0453991 Rosa chinensis HOM05D003767 ORTHO05D004507 1.0e-201 707.2 500 70.8
Thhalv10003956m.g Eutrema salsugineum HOM05D003767 ORTHO05D004507 2.9e-201 705.7 563 64.3
Sp2g20600 Schrenkiella parvula HOM05D003767 ORTHO05D004507 2.9e-201 705.7 567 64.6
Oeu027914.1 Olea europaea HOM05D003767 ORTHO05D004507 3.8e-201 705.3 578 64.0
FvH4_6g05260 Fragaria vesca HOM05D003767 ORTHO05D004507 1.1e-200 703.7 495 70.9
PSO210G1178 Papaver somniferum HOM05D003767 ORTHO05D004507 1.9e-200 703.0 585 65.3
ECA238G2357 Erigeron canadensis HOM05D003767 ORTHO05D004507 5.5e-200 701.4 498 69.9
THA.LOC104821704 Tarenaya hassleriana HOM05D003767 ORTHO05D004507 1.2e-199 700.3 573 62.5
MD04G1210100 Malus domestica HOM05D003767 ORTHO05D004507 2.7e-199 699.1 550 65.6
MELO3C015345.2 Cucumis melo HOM05D003767 ORTHO05D004507 4.7e-199 698.4 503 69.4
MSTRG.8108 Avicennia marina HOM05D003767 ORTHO05D004507 7.9e-199 697.6 517 68.1
CARHR185970 Cardamine hirsuta HOM05D003767 ORTHO05D004507 7.9e-199 697.6 516 66.9
Migut.F01584 Erythranthe guttata HOM05D003767 ORTHO05D004507 7.9e-199 697.6 552 65.6
Psat3g009360 Pisum sativum HOM05D003767 ORTHO05D004507 1.8e-198 696.4 555 67.0
Nitab4.5_0004940g0030 Nicotiana tabacum HOM05D003767 ORTHO05D004507 3.0e-198 695.7 502 69.5
Solyc01g098610.4 Solanum lycopersicum HOM05D003767 ORTHO05D004507 3.0e-198 695.7 576 64.1
Aqoxy5G00559 Aquilegia oxysepala HOM05D003767 ORTHO05D004507 5.2e-198 694.9 583 63.1
PGSC0003DMG400028599 Solanum tuberosum HOM05D003767 ORTHO05D004507 1.5e-197 693.3 502 70.1
C09p05700 Brassica napus HOM05D003767 ORTHO05D004507 2.0e-197 693.0 565 62.3
AT5G27380 Arabidopsis thaliana HOM05D003767 ORTHO05D004507 7.4e-197 691.0 564 63.5
BolC7t44598H Brassica oleracea HOM05D003767 ORTHO05D004507 7.4e-197 691.0 502 68.3
Eucgr.H04452 Eucalyptus grandis HOM05D003767 ORTHO05D004507 7.4e-197 691.0 581 62.3
Sed0026847 Sechium edule HOM05D003767 ORTHO05D004507 7.4e-197 691.0 503 67.8
AL6G39640 Arabidopsis lyrata HOM05D003767 ORTHO05D004507 1.3e-196 690.3 567 62.8
Aa31LG11G9150 Aethionema arabicum HOM05D003767 ORTHO05D004507 1.7e-196 689.9 502 68.1
A09p05240 Brassica napus HOM05D003767 ORTHO05D004507 2.2e-196 689.5 565 61.8
PGR031G1040 Punica granatum HOM05D003767 ORTHO05D004507 2.2e-196 689.5 570 62.8
VMungo0540G0577 Vigna mungo HOM05D003767 ORTHO05D004507 2.8e-196 689.1 558 64.0
RhsimUnG0080300 Rhododendron simsii HOM05D003767 ORTHO05D004507 3.7e-196 688.7 518 67.6
Carub.0006s2517 Capsella rubella HOM05D003767 ORTHO05D004507 1.1e-195 687.2 558 62.7
BcaNung02467 Brassica carinata HOM05D003767 ORTHO05D004507 9.1e-195 684.1 502 67.5
C07p40700 Brassica napus HOM05D003767 ORTHO05D004507 9.1e-195 684.1 502 67.5
AUR62005115 Chenopodium quinoa HOM05D003767 ORTHO05D004507 9.1e-195 684.1 613 60.0
BraA09t36163Z Brassica rapa HOM05D003767 ORTHO05D004507 1.6e-194 683.3 565 61.8
BraA06t26680Z Brassica rapa HOM05D003767 ORTHO05D004507 1.3e-193 680.2 502 67.1
MD12G1224500 Malus domestica HOM05D003767 ORTHO05D004507 1.3e-193 680.2 550 64.5
Cc02_g32590 Coffea canephora HOM05D003767 ORTHO05D004507 2.9e-193 679.1 501 70.1
A06p37610 Brassica napus HOM05D003767 ORTHO05D004507 3.8e-193 678.7 502 66.9
BcaNung04364 Brassica carinata HOM05D003767 ORTHO05D004507 1.5e-192 676.8 502 66.9
Lj9A681G36 Lonicera japonica HOM05D003767 ORTHO05D004507 2.5e-192 676.0 488 69.1
DCAR_002932 Daucus carota HOM05D003767 ORTHO05D004507 4.2e-192 675.2 500 68.6
unitig_26.g9470 Utricularia gibba HOM05D003767 ORTHO05D004507 1.2e-191 673.7 508 66.1
FAN14G0860 Fragaria x ananassa HOM05D003767 ORTHO05D004507 2.7e-191 672.5 495 68.5
FAN14G3644 Fragaria x ananassa HOM05D003767 ORTHO05D004507 2.7e-191 672.5 495 68.5
FAN05G2944 Fragaria x ananassa HOM05D003767 ORTHO05D004507 6.1e-191 671.4 495 68.5
SGA_v2.0_scaffold13G06464 Striga asiatica HOM05D003767 ORTHO05D004507 1.8e-190 669.8 504 67.1
EL10Ac4g09299 Beta vulgaris HOM05D003767 ORTHO05D004507 2.3e-190 669.5 568 61.4
COL.COLO4_12128 Corchorus olitorius HOM05D003767 ORTHO05D004507 2.0e-189 666.4 570 62.1
SalBow6G1775 Salvia bowleyana HOM05D003767 ORTHO05D003551 2.6e-189 666.0 490 69.8
CSS0020414 Camellia sinensis var. sinensis HOM05D003767 ORTHO05D004507 1.7e-188 663.3 513 66.9
Rhsim07G0179200 Rhododendron simsii HOM05D003767 ORTHO05D004507 2.8e-188 662.5 598 60.0
ECA238G1346 Erigeron canadensis HOM05D003767 ORTHO05D004507 6.3e-188 661.4 498 66.9
Aqoxy2G03198 Aquilegia oxysepala HOM05D003767 ORTHO05D004507 8.2e-188 661.0 493 69.0
BcaB04g19665 Brassica carinata HOM05D003767 ORTHO05D004507 8.2e-188 661.0 562 59.8
CAN.G1134.12 Capsicum annuum HOM05D003767 ORTHO05D004507 1.4e-187 660.2 530 64.5
BcaC04g23683 Brassica carinata HOM05D003767 ORTHO05D004507 1.8e-187 659.8 565 60.0
BolC9t53499H Brassica oleracea HOM05D003767 ORTHO05D004507 3.1e-187 659.1 565 60.0
Os12g0528400 Oryza sativa ssp. japonica HOM05D003767 ORTHO05D004507 2.5e-184 649.4 484 66.7
Hund07038 Selenicereus undatus HOM05D003767 ORTHO05D004507 2.7e-183 646.0 572 60.0
Os11g0642800 Oryza sativa ssp. japonica HOM05D003767 ORTHO05D004507 6.1e-183 644.8 491 65.6
Lsat_1_v5_gn_2_64341 Lactuca sativa HOM05D003767 ORTHO05D004507 3.0e-182 642.5 578 59.3
CSS0005723 Camellia sinensis var. sinensis HOM05D003767 ORTHO05D004507 2.2e-180 636.3 513 64.5
FAN09G3025 Fragaria x ananassa HOM05D003767 ORTHO05D004507 3.1e-179 632.5 495 65.3
ClCG03G016760 Citrullus lanatus HOM05D003767 ORTHO05D004507 1.3e-177 627.1 657 52.4
MBI17_g18114_MAGBIO Magnolia biondii HOM05D003767 ORTHO05D004507 5.0e-169 598.6 556 59.0
Os12g0263000 Oryza sativa ssp. japonica HOM05D003767 ORTHO05D004507 2.6e-165 586.3 493 60.0
Peaxi162Scf00434g00336 Petunia axillaris HOM05D003767 ORTHO05D004507 3.2e-163 579.3 531 60.1
Cpa.g.sc48.5 Carica papaya HOM05D003767 ORTHO05D004507 3.5e-162 575.9 503 60.8
Atru.chr2.496 Acer truncatum HOM05D003767 ORTHO05D004507 1.0e-158 564.3 392 72.2
CSS0007130 Camellia sinensis var. sinensis HOM05D003767 ORTHO05D004507 1.9e-155 553.5 395 71.6
Zm00001eb137820 Zea mays HOM05D003767 ORTHO05D004507 2.8e-151 539.7 420 66.2
Ah.06g190170 Amaranthus hybridus HOM05D003767 ORTHO05D004507 7.1e-147 525.0 502 54.2
Actinidia05727 Actinidia chinensis HOM05D003767 ORTHO05D004507 2.1e-143 513.5 520 56.3
Mapoly0002s0041 Marchantia polymorpha HOM05D003767 ORTHO05D004507 2.8e-143 513.1 488 53.7
SMO271G0026 Selaginella moellendorffii HOM05D003767 ORTHO05D004507 2.9e-140 503.1 486 54.1
Zm00001eb115490 Zea mays HOM05D003767 ORTHO05D004507 2.4e-139 500.0 391 65.2
Pp3c1_36280 Physcomitrium patens HOM05D003767 ORTHO05D004507 4.1e-139 499.2 495 53.3
Nitab4.5_0001423g0150 Nicotiana tabacum HOM05D003767 ORTHO05D004507 5.6e-136 488.8 390 65.4
Sabra05G0038000 Salix brachista HOM05D003767 ORTHO05D004507 1.8e-134 483.8 338 69.5
FAN05G1904 Fragaria x ananassa HOM05D003767 ORTHO05D004507 2.9e-132 476.5 502 51.8
HPP92_001826 Vanilla planifolia HOM05D003767 ORTHO05D004507 7.8e-130 468.4 410 61.0
CsaV3_1G039210 Cucumis sativus L. HOM05D003767 ORTHO05D004507 6.2e-127 458.8 364 64.8
Nn1g08367 Nelumbo nucifera HOM05D003767 ORTHO05D004507 9.6e-120 434.9 317 69.1
VMungo0540G2112 Vigna mungo HOM05D003767 ORTHO05D004507 1.2e-117 427.9 311 69.8
Haze_04251 Corylus avellana HOM05D003767 ORTHO05D004507 2.4e-110 403.7 388 58.2
Cre17.g708800 Chlamydomonas reinhardtii HOM05D003767 ORTHO05D004507 3.2e-107 393.3 511 44.6
Lalb_Chr15g0077051 Lupinus albus HOM05D003767 ORTHO05D004507 4.2e-107 392.9 219 88.1
HanXRQChr10g0295061 Helianthus annuus HOM05D003767 ORTHO05D004507 2.7e-106 390.2 245 75.9
PRCOL_00004575 Prasinoderma coloniale HOM05D003767 ORTHO05D004507 3.1e-102 376.7 507 43.2
HanXRQChr14g0446461 Helianthus annuus HOM05D003767 ORTHO05D004507 6.3e-95 352.4 215 78.1
HanXRQChr14g0446471 Helianthus annuus HOM05D003767 ORTHO05D004507 7.7e-93 345.5 302 59.6
ATR0626G007 Amborella trichopoda HOM05D003767 ORTHO05D004507 1.3e-92 344.7 216 75.5
HanXRQChr10g0295071 Helianthus annuus HOM05D003767 ORTHO05D004507 3.2e-91 340.1 239 69.9
FAN02G0487 Fragaria x ananassa HOM05D003767 ORTHO05D004507 3.9e-89 333.2 225 72.4
SGA_v2.0_scaffold499G52492 Striga asiatica HOM05D003767 ORTHO05D004507 1.3e-87 328.2 287 58.5
Lalb_Chr15g0077061 Lupinus albus HOM05D003767 ORTHO05D004507 2.4e-86 323.9 203 76.8
MCO07G639 Micromonas commoda HOM05D003767 ORTHO05D004507 3.4e-85 320.1 485 38.1
ATR0626G021 Amborella trichopoda HOM05D003767 ORTHO05D004507 7.2e-83 312.4 263 59.7
COL.COLO4_24985 Corchorus olitorius HOM05D003767 ORTHO05D004507 9.7e-72 275.4 187 74.3
AagrBONN_evm.TU.Sc2ySwM_117.2518 Anthoceros agrestis HOM05D003767 ORTHO05D004507 2.0e-69 267.7 300 46.3
Sabra05G0037900 Salix brachista HOM05D003767 ORTHO05D004507 5.5e-67 259.6 168 75.6
CBR_g15993 Chara braunii HOM05D003767 ORTHO05D004507 1.2e-66 258.5 499 33.7
Cfa024552 Carpinus fangiana HOM05D003767 ORTHO05D004507 2.0e-61 241.1 505 33.9
Actinidia24503 Actinidia chinensis HOM05D003767 ORTHO05D004507 3.0e-57 227.3 289 46.7
SEGI_25900 Sequoiadendron giganteum HOM05D003767 ORTHO05D004507 3.7e-55 220.3 152 70.4
COL.COLO4_10335 Corchorus olitorius HOM05D003767 ORTHO05D004507 9.2e-54 215.7 183 64.5
Nn1g08361 Nelumbo nucifera HOM05D003767 ORTHO05D004507 4.3e-51 206.8 149 71.8
SMO304G0030 Selaginella moellendorffii HOM05D003767 ORTHO05D004507 4.7e-50 203.4 304 42.1
Eucgr.H04446 Eucalyptus grandis HOM05D003767 ORTHO05D004507 3.6e-42 177.2 114 74.6
Nn1g02104 Nelumbo nucifera HOM05D003767 ORTHO05D004507 1.4e-41 175.3 125 64.8
CDE02G2107 Ceratophyllum demersum HOM05D000488 ORTHO05D000347 3.7e-39 167.2 124 65.3
SEGI_31082 Sequoiadendron giganteum HOM05D003767 ORTHO05D004507 8.6e-36 156.0 166 46.4
CSS0000499 Camellia sinensis var. sinensis HOM05D003767 ORTHO05D004507 8.9e-33 146.0 80 85.0
CAN.G299.1 Capsicum annuum HOM05D003767 ORTHO05D004507 1.2e-32 145.6 88 77.3
A10p14120 Brassica napus HOM05D000085 ORTHO05D001756 2.9e-31 141.0 92 64.1
BcaC05g27416 Brassica carinata HOM05D003767 ORTHO05D004507 2.4e-30 137.9 153 50.3
SGA_v2.0_scaffold71G23819 Striga asiatica HOM05D001920 ORTHO05D004895 3.2e-30 137.5 82 74.4
Zm00001eb126550 Zea mays HOM05D003767 ORTHO05D004507 5.4e-30 136.7 102 70.6
TAR636G1925 Trochodendron aralioides HOM05D003767 ORTHO05D004507 2.7e-29 134.4 76 82.9
BolC5t32099H Brassica oleracea HOM05D003767 ORTHO05D041347 6.0e-29 133.3 354 31.9
TAR636G2499 Trochodendron aralioides HOM05D003767 ORTHO05D004507 3.3e-27 127.5 77 79.2
C05p33690 Brassica napus HOM05D003767 ORTHO05D041347 4.3e-27 127.1 350 30.9
RcHm_v2.0_Chr2g0172961 Rosa chinensis HOM05D003767 ORTHO05D004507 5.8e-24 116.7 64 85.9
Glyma.03G240651 Glycine max HOM05D003767 ORTHO05D004507 1.4e-22 112.1 95 60.0
RcHm_v2.0_Chr2g0172981 Rosa chinensis HOM05D003767 ORTHO05D004507 4.2e-22 110.5 133 46.6
VMungo0540G1019 Vigna mungo HOM05D003767 ORTHO05D004507 4.2e-22 110.5 80 61.2
Sabra13G0027500 Salix brachista HOM05D004613 ORTHO05D006095 1.6e-21 108.6 64 76.6
Zm00001eb115470 Zea mays HOM05D003767 ORTHO05D004507 4.6e-21 107.1 83 65.1
Zm00001eb275300 Zea mays HOM05D003767 ORTHO05D004507 1.3e-20 105.5 80 67.5
A10p03590 Brassica napus HOM05D003767 ORTHO05D004507 8.7e-20 102.8 65 69.2
Psat1g075760 Pisum sativum HOM05D003767 ORTHO05D004507 1.9e-19 101.7 113 48.7
CAN.G73.7 Capsicum annuum HOM05D003767 ORTHO05D000047 4.7e-18 97.1 57 75.4
RcHm_v2.0_Chr2g0172971 Rosa chinensis HOM05D003767 ORTHO05D004507 2.1e-13 81.6 93 45.2
SMO304G0024 Selaginella moellendorffii HOM05D003767 ORTHO05D004507 1.7e-12 78.6 162 36.4
RcHm_v2.0_Chr6g0303351 Rosa chinensis HOM05D003767 ORTHO05D004507 7.3e-11 73.2 48 72.9
SMO164G0207 Selaginella moellendorffii HOM05D003767 ORTHO05D004507 4.8e-10 70.5 111 42.3
RcHm_v2.0_Chr2g0172951 Rosa chinensis HOM05D003767 ORTHO05D004507 3.1e-09 67.8 51 60.8
SMO164G0195 Selaginella moellendorffii HOM05D003767 ORTHO05D004507 3.2e-06 57.8 155 31.0


User provided reference genes

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