Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.RN3XR3 Arachis hypogaea HOM05D005861 ORTHO05D007151 2.6e-283 978.0 477 100.0
arahy.Tifrunner.gnm1.ann1.MH4CM1 Arachis hypogaea HOM05D005861 ORTHO05D007151 7.5e-267 923.3 484 95.0
Glyma.15G156500 Glycine max HOM05D005861 ORTHO05D007151 5.3e-220 767.7 486 79.0
Glyma.09G049800 Glycine max HOM05D005861 ORTHO05D007151 1.0e-218 763.5 485 78.4
Lj6g0026320 Lotus japonicus HOM05D005861 ORTHO05D007151 2.9e-218 761.9 480 77.9
Lalb_Chr18g0052021 Lupinus albus HOM05D005861 ORTHO05D007151 5.5e-217 757.7 480 78.3
Medtr2g035660 Medicago truncatula HOM05D005861 ORTHO05D007151 1.1e-209 733.4 472 77.1
MD10G1226200 Malus domestica HOM05D005861 ORTHO05D007151 3.2e-209 731.9 491 74.7
Prupe.4G119100 Prunus persica HOM05D005861 ORTHO05D007151 5.5e-209 731.1 482 74.9
Phvul.009G243500 Phaseolus vulgaris HOM05D005861 ORTHO05D007151 2.1e-208 729.2 486 75.7
Cfa001144 Carpinus fangiana HOM05D005861 ORTHO05D007151 3.0e-207 725.3 485 73.8
QL11p011864 Quercus lobata HOM05D005861 ORTHO05D007151 3.0e-207 725.3 485 74.2
QL93p0142_0007 Quercus lobata HOM05D005861 ORTHO05D007151 3.0e-207 725.3 485 74.2
GSVIVG01012161001 Vitis vinifera HOM05D005861 ORTHO05D007151 3.0e-207 725.3 484 74.6
VMungo1309G1344 Vigna mungo HOM05D005861 ORTHO05D007151 3.3e-206 721.8 485 74.6
Ciclev10015087m.g Citrus clementina HOM05D005861 ORTHO05D007151 7.4e-206 720.7 480 73.8
Manes.03G071200 Manihot esculenta HOM05D005861 ORTHO05D007151 9.7e-206 720.3 488 73.2
Atru.chr10.266 Acer truncatum HOM05D005861 ORTHO05D007151 3.7e-205 718.4 481 75.1
Potri.003G155100 Populus trichocarpa HOM05D005861 ORTHO05D007151 3.1e-204 715.3 492 72.4
RcHm_v2.0_Chr5g0021381 Rosa chinensis HOM05D005861 ORTHO05D007151 9.0e-204 713.8 484 73.3
TAR636G0982 Trochodendron aralioides HOM05D005861 ORTHO05D007151 1.3e-202 709.9 472 73.7
ClCG03G004130 Citrullus lanatus HOM05D005861 ORTHO05D007151 2.9e-202 708.8 478 72.8
Gorai.009G012700 Gossypium raimondii HOM05D005861 ORTHO05D007151 3.8e-202 708.4 448 77.5
TPR.G26579 Trifolium pratense HOM05D005861 ORTHO05D007151 3.8e-202 708.4 483 74.5
CSS0003156 Camellia sinensis var. sinensis HOM05D005861 ORTHO05D007151 5.0e-202 708.0 494 72.3
Thecc.09G140900 Theobroma cacao HOM05D005861 ORTHO05D007151 1.1e-201 706.8 440 79.8
Nn7g38377 Nelumbo nucifera HOM05D005861 ORTHO05D007151 1.4e-201 706.4 485 72.8
FvH4_3g13130 Fragaria vesca HOM05D005861 ORTHO05D007151 7.2e-201 704.1 489 72.6
MELO3C002396.2 Cucumis melo HOM05D005861 ORTHO05D007151 9.4e-201 703.7 483 72.9
Gohir.A05G011700 Gossypium hirsutum HOM05D005861 ORTHO05D007151 1.2e-200 703.4 462 75.8
Dinv05874 Davidia involucrata HOM05D005861 ORTHO05D007151 3.0e-199 698.7 493 73.0
CsaV3_1G010060 Cucumis sativus L. HOM05D005861 ORTHO05D007151 6.7e-199 697.6 478 72.0
Haze_05240 Corylus avellana HOM05D005861 ORTHO05D007151 2.0e-198 696.0 542 66.2
Sed0025210 Sechium edule HOM05D005861 ORTHO05D007151 4.3e-198 694.9 478 71.1
Sopen02g026550 Solanum pennellii HOM05D005861 ORTHO05D007151 2.2e-197 692.6 504 69.0
FAN21G1611 Fragaria x ananassa HOM05D005861 ORTHO05D007151 1.1e-196 690.3 517 68.7
FAN16G2684 Fragaria x ananassa HOM05D005861 ORTHO05D007151 2.4e-196 689.1 517 68.7
Solyc02g081920.3 Solanum lycopersicum HOM05D005861 ORTHO05D007151 2.4e-196 689.1 504 68.7
TWI38G1305 Tripterygium wilfordii HOM05D005861 ORTHO05D007151 2.4e-196 689.1 482 71.6
Cc09_g01980 Coffea canephora HOM05D005861 ORTHO05D007151 3.1e-196 688.7 440 76.1
CAN.G809.40 Capsicum annuum HOM05D005861 ORTHO05D007151 6.9e-196 687.6 502 69.3
PSO782G3554 Papaver somniferum HOM05D005861 ORTHO05D007151 6.9e-196 687.6 486 70.2
PSO063G0366 Papaver somniferum HOM05D005861 ORTHO05D007151 7.7e-195 684.1 485 69.5
PGSC0003DMG401007333 Solanum tuberosum HOM05D005861 ORTHO05D007151 1.3e-194 683.3 505 68.5
Aqoxy3G04101 Aquilegia oxysepala HOM05D005861 ORTHO05D007151 5.0e-194 681.4 490 70.0
SGA_v2.0_scaffold298G47711 Striga asiatica HOM05D005861 ORTHO05D007151 3.0e-191 672.2 489 68.5
MSTRG.18594 Avicennia marina HOM05D005861 ORTHO05D007151 8.8e-191 670.6 432 75.7
THA.LOC104811881 Tarenaya hassleriana HOM05D005861 ORTHO05D007151 8.8e-191 670.6 494 68.6
Peaxi162Scf00036g00158 Petunia axillaris HOM05D005861 ORTHO05D007151 9.7e-190 667.2 414 77.1
Psat1g150560 Pisum sativum HOM05D005861 ORTHO05D007151 1.3e-189 666.8 458 72.1
Migut.O00467 Erythranthe guttata HOM05D005861 ORTHO05D007151 2.2e-189 666.0 436 73.4
Migut.M02023 Erythranthe guttata HOM05D005861 ORTHO05D007151 1.1e-188 663.7 485 67.6
Nitab4.5_0000844g0330 Nicotiana tabacum HOM05D005861 ORTHO05D007151 9.1e-188 660.6 521 66.0
Carub.0007s2100 Capsella rubella HOM05D005861 ORTHO05D007151 1.6e-187 659.8 485 67.2
AL7G33690 Arabidopsis lyrata HOM05D005861 ORTHO05D007151 7.7e-187 657.5 485 67.6
AT4G20130 Arabidopsis thaliana HOM05D005861 ORTHO05D007151 7.7e-187 657.5 477 67.5
CARHR226960 Cardamine hirsuta HOM05D005861 ORTHO05D007151 1.7e-186 656.4 485 66.6
Eucgr.D00007 Eucalyptus grandis HOM05D005861 ORTHO05D007151 3.8e-186 655.2 486 68.5
BcaB03g11658 Brassica carinata HOM05D005861 ORTHO05D007151 6.5e-186 654.4 488 67.6
Sp7g18560 Schrenkiella parvula HOM05D005861 ORTHO05D007151 1.2e-184 650.2 485 67.0
Aa31LG6G2540 Aethionema arabicum HOM05D005861 ORTHO05D007151 2.7e-184 649.0 485 66.8
A08p14640 Brassica napus HOM05D005861 ORTHO05D007151 2.7e-184 649.0 488 66.6
BraA08t33451Z Brassica rapa HOM05D005861 ORTHO05D007151 2.7e-184 649.0 488 66.6
BcaC01g00656 Brassica carinata HOM05D005861 ORTHO05D007151 6.1e-184 647.9 488 66.6
C03p82790 Brassica napus HOM05D005861 ORTHO05D007151 2.6e-182 642.5 482 66.4
BolC3t20561H Brassica oleracea HOM05D005861 ORTHO05D007151 2.6e-182 642.5 482 66.4
Thhalv10027180m.g Eutrema salsugineum HOM05D005861 ORTHO05D007151 1.3e-181 640.2 485 66.6
Oeu008732.1 Olea europaea HOM05D005861 ORTHO05D007151 4.8e-181 638.3 426 72.8
HanXRQChr04g0116561 Helianthus annuus HOM05D005861 ORTHO05D007151 1.2e-179 633.6 453 69.8
Sc24g0002940 Simmondsia chinensis HOM05D005861 ORTHO05D007151 1.6e-179 633.3 415 73.7
ECA236G3447 Erigeron canadensis HOM05D005861 ORTHO05D007151 7.7e-179 630.9 499 64.1
CiPaw.09G138900 Carya illinoinensis HOM05D005861 ORTHO05D007151 1.3e-178 630.2 486 66.9
TWI63G1685 Tripterygium wilfordii HOM05D005861 ORTHO05D007151 3.8e-178 628.6 485 67.2
PGR004G1814 Punica granatum HOM05D005861 ORTHO05D007151 8.5e-178 627.5 400 77.2
Nitab4.5_0000632g0140 Nicotiana tabacum HOM05D005861 ORTHO05D007151 1.5e-177 626.7 485 67.6
FAN25G2772 Fragaria x ananassa HOM05D005861 ORTHO05D007151 8.8e-175 617.5 523 62.7
vmacro03562 Vaccinium macrocarpon HOM05D005861 ORTHO05D007151 2.6e-174 615.9 611 55.2
DCAR_003751 Daucus carota HOM05D005861 ORTHO05D007151 5.7e-174 614.8 471 66.9
EL10Ac3g07109 Beta vulgaris HOM05D005861 ORTHO05D007151 2.9e-170 602.4 425 68.5
Cpa.g.sc30.93 Carica papaya HOM05D005861 ORTHO05D007151 5.2e-167 591.7 458 66.2
Duzib168G0529 Durio zibethinus HOM05D005861 ORTHO05D007151 2.6e-166 589.3 445 67.6
unitig_37.g12046 Utricularia gibba HOM05D005861 ORTHO05D007151 1.7e-165 586.6 443 66.1
AUR62039890 Chenopodium quinoa HOM05D005861 ORTHO05D007151 4.9e-165 585.1 438 66.7
Gohir.D05G012400 Gossypium hirsutum HOM05D005861 ORTHO05D007151 7.0e-164 581.3 366 77.6
AUR62040329 Chenopodium quinoa HOM05D005861 ORTHO05D007151 1.0e-162 577.4 438 66.4
Sabra03G0112200 Salix brachista HOM05D005861 ORTHO05D007151 6.4e-157 558.1 523 57.7
CDE02G4422 Ceratophyllum demersum HOM05D005861 ORTHO05D007151 1.4e-156 557.0 486 61.5
Gohir.D05G012700 Gossypium hirsutum HOM05D005861 ORTHO05D007151 1.7e-154 550.1 341 77.7
Pp3c8_21700 Physcomitrium patens HOM05D005861 ORTHO05D007151 7.8e-139 498.0 421 56.5
ATR0763G186 Amborella trichopoda HOM05D005479 ORTHO05D007756 1.9e-137 493.4 304 77.6
Mapoly0003s0096 Marchantia polymorpha HOM05D005861 ORTHO05D007151 1.9e-137 493.4 427 57.4
Zm00001eb345040 Zea mays HOM05D005861 ORTHO05D007151 1.3e-133 480.7 369 64.8
Lsat_1_v5_gn_7_27441 Lactuca sativa HOM05D005861 ORTHO05D007151 4.9e-133 478.8 334 68.3
Ah.08g212320 Amaranthus hybridus HOM05D005861 ORTHO05D007151 8.4e-133 478.0 455 55.8
AagrBONN_evm.TU.Sc2ySwM_344.4889 Anthoceros agrestis HOM05D005861 ORTHO05D007151 2.4e-132 476.5 425 55.8
Gorai.N022300 Gossypium raimondii HOM05D005861 ORTHO05D007151 5.8e-126 455.3 432 57.6
SMO331G0022 Selaginella moellendorffii HOM05D005861 ORTHO05D007151 3.6e-120 436.0 424 50.2
COL.COLO4_24113 Corchorus olitorius HOM05D005861 ORTHO05D003578 1.6e-115 420.6 402 57.7
CBR_g61479 Chara braunii HOM05D005861 ORTHO05D007151 3.2e-92 343.2 444 41.9
Lj1g0026190 Lotus japonicus HOM05D005861 ORTHO05D007151 5.5e-92 342.4 266 65.8
Ca_28373_v3 Cicer arietinum L. HOM05D005861 ORTHO05D007151 1.8e-87 327.4 196 79.6
Ca_01979_v3 Cicer arietinum L. HOM05D005861 ORTHO05D007151 5.3e-87 325.9 222 74.3
A04p29830 Brassica napus HOM05D005861 ORTHO05D007151 5.0e-85 319.3 289 58.5
Hund25553 Selenicereus undatus HOM05D005861 ORTHO05D007151 6.5e-85 318.9 297 57.2
HPP92_009503 Vanilla planifolia HOM05D005861 ORTHO05D007151 1.8e-79 300.8 236 65.3
Cfa001273 Carpinus fangiana HOM05D005861 ORTHO05D007151 1.7e-72 277.7 229 64.2
BraA04t18443Z Brassica rapa HOM05D005861 ORTHO05D007151 2.2e-72 277.3 304 52.3
QL93p2001_0005 Quercus lobata HOM05D005861 ORTHO05D007151 8.2e-72 275.4 165 80.0
RcHm_v2.0_Chr5g0063511 Rosa chinensis HOM05D005861 ORTHO05D007151 2.6e-57 227.3 115 92.2
VMungo0344G0001 Vigna mungo HOM05D005861 ORTHO05D007151 2.4e-55 220.7 146 73.3
VMungo1383G1601 Vigna mungo HOM05D005861 ORTHO05D007151 2.4e-55 220.7 141 73.8
RcHm_v2.0_Chr3g0456081 Rosa chinensis HOM05D005861 ORTHO05D007151 2.6e-49 200.7 146 69.9
HPP92_009502 Vanilla planifolia HOM05D005861 ORTHO05D007151 3.7e-48 196.8 175 58.9
MD05G1244800 Malus domestica HOM05D005861 ORTHO05D007151 7.0e-47 192.6 216 49.1
Lj6g0014924 Lotus japonicus HOM05D005861 ORTHO05D007151 2.5e-44 184.1 129 71.3
Lj3g0008154 Lotus japonicus HOM05D005861 ORTHO05D007151 3.6e-43 180.3 146 62.3
Duzib187G1938 Durio zibethinus HOM05D005861 ORTHO05D007151 1.5e-41 174.9 109 76.1
Os05g0587200 Oryza sativa ssp. japonica HOM05D005861 ORTHO05D007151 1.2e-38 165.2 91 82.4
Lj4g0007893 Lotus japonicus HOM05D005861 ORTHO05D007151 1.7e-37 161.4 98 77.6
PGSC0003DMG400012780 Solanum tuberosum HOM05D005861 ORTHO05D007151 2.6e-33 147.5 105 69.5
Lj1g0009858 Lotus japonicus HOM05D005861 ORTHO05D007151 3.2e-31 140.6 114 63.2
Lj1g0019510 Lotus japonicus HOM05D005861 ORTHO05D007151 9.5e-28 129.0 67 91.0
A03p17610 Brassica napus HOM05D005861 ORTHO05D007151 1.1e-26 125.6 122 57.4
MD05G1244900 Malus domestica HOM05D005861 ORTHO05D007151 1.7e-21 108.2 71 73.2
Ah.11g040820 Amaranthus hybridus HOM05D005861 ORTHO05D007151 7.3e-20 102.8 75 62.7
FAN17G1535 Fragaria x ananassa HOM05D005456 ORTHO05D006805 2.1e-14 84.7 414 25.1
FAN12G1233 Fragaria x ananassa HOM05D005456 ORTHO05D006805 6.0e-14 83.2 423 24.8
A03p17620 Brassica napus HOM05D005861 ORTHO05D007151 2.3e-13 81.3 48 79.2
PSO063G1835 Papaver somniferum HOM05D005456 ORTHO05D006805 3.0e-13 80.9 438 24.7
RcHm_v2.0_Chr4g0439211 Rosa chinensis HOM05D005456 ORTHO05D006805 3.9e-13 80.5 423 24.8
PSO063G4701 Papaver somniferum HOM05D005456 ORTHO05D006805 5.1e-13 80.1 422 25.1
CANSAT64G0403 Cannabis sativa HOM05D005456 ORTHO05D006805 3.3e-12 77.4 421 23.5
AUR62032826 Chenopodium quinoa HOM05D005456 ORTHO05D006805 3.3e-12 77.4 422 24.9
MD05G1244700 Malus domestica HOM05D005861 ORTHO05D007151 1.2e-11 75.5 34 97.1
Nitab4.5_0011915g0020 Nicotiana tabacum HOM05D005456 ORTHO05D006805 1.2e-11 75.5 403 22.6
Aqoxy3G03473 Aquilegia oxysepala HOM05D005456 ORTHO05D006805 1.6e-11 75.1 419 24.3
CARHR014400 Cardamine hirsuta HOM05D005456 ORTHO05D006805 1.6e-11 75.1 424 23.8
Duzib251G0039 Durio zibethinus HOM05D005456 ORTHO05D006805 1.6e-11 75.1 422 23.9
CsaV3_2G010860 Cucumis sativus L. HOM05D005456 ORTHO05D006805 2.1e-11 74.7 451 23.5
AL1G25870 Arabidopsis lyrata HOM05D005456 ORTHO05D006805 4.7e-11 73.6 422 23.5
MD16G1067900 Malus domestica HOM05D005456 ORTHO05D006805 4.7e-11 73.6 497 23.7
Gohir.A03G102200 Gossypium hirsutum HOM05D005456 ORTHO05D006805 6.2e-11 73.2 518 23.0
Thecc.02G340400 Theobroma cacao HOM05D005456 ORTHO05D006805 8.1e-11 72.8 420 23.6
PGSC0003DMG400028348 Solanum tuberosum HOM05D005456 ORTHO05D006805 1.1e-10 72.4 423 22.5
Sopen05g007900 Solanum pennellii HOM05D005456 ORTHO05D006805 1.4e-10 72.0 423 22.5
THA.LOC104801808 Tarenaya hassleriana HOM05D005456 ORTHO05D006805 1.8e-10 71.6 423 23.4
AT1G14030 Arabidopsis thaliana HOM05D005456 ORTHO05D006805 2.4e-10 71.2 412 23.8
BraA09t41618Z Brassica rapa HOM05D005456 ORTHO05D006805 2.4e-10 71.2 423 23.6
Cc11_g12670 Coffea canephora HOM05D005456 ORTHO05D006805 2.4e-10 71.2 426 23.0
Gorai.005G142600 Gossypium raimondii HOM05D005456 ORTHO05D006805 2.4e-10 71.2 498 22.1
Medtr4g082305 Medicago truncatula HOM05D005456 ORTHO05D006805 2.4e-10 71.2 422 23.5
ClCG09G021880 Citrullus lanatus HOM05D005456 ORTHO05D006805 3.1e-10 70.9 412 24.0
Phvul.002G169400 Phaseolus vulgaris HOM05D005456 ORTHO05D006805 5.2e-10 70.1 422 23.9
CSS0028557 Camellia sinensis var. sinensis HOM05D005456 ORTHO05D006805 9.0e-10 69.3 419 23.2
EL10Ac6g13252 Beta vulgaris HOM05D005456 ORTHO05D006805 1.2e-09 68.9 475 23.4
A09p62550 Brassica napus HOM05D005456 ORTHO05D006805 1.2e-09 68.9 413 23.7
CSS0014292 Camellia sinensis var. sinensis HOM05D005456 ORTHO05D006805 1.2e-09 68.9 419 22.9
Glyma.07G228300 Glycine max HOM05D005456 ORTHO05D006805 1.2e-09 68.9 419 22.9
Solyc05g013160.4 Solanum lycopersicum HOM05D005456 ORTHO05D006805 1.2e-09 68.9 423 22.2
Ca_08719_v3 Cicer arietinum L. HOM05D005456 ORTHO05D006805 1.5e-09 68.6 423 23.6
BolC8t52161H Brassica oleracea HOM05D005456 ORTHO05D006805 2.0e-09 68.2 413 23.5
Cpa.g.sc991.1 Carica papaya HOM05D005456 ORTHO05D006805 2.6e-09 67.8 425 22.4
Hund25214 Selenicereus undatus HOM05D005456 ORTHO05D006805 2.6e-09 67.8 424 24.5
C08p46110 Brassica napus HOM05D005456 ORTHO05D006805 3.4e-09 67.4 423 23.2
Carub.0001s1372 Capsella rubella HOM05D005456 ORTHO05D006805 4.4e-09 67.0 423 22.2
MELO3C008524.2 Cucumis melo HOM05D005456 ORTHO05D006805 4.4e-09 67.0 414 23.4
Glyma.20G031600 Glycine max HOM05D005456 ORTHO05D006805 4.4e-09 67.0 421 23.0
Atru.chr11.1728 Acer truncatum HOM05D005456 ORTHO05D006805 7.6e-09 66.2 483 22.8
PRCOL_00004288 Prasinoderma coloniale HOM05D027521 ORTHO05D007151 7.6e-09 66.2 290 25.5
Rhsim12G0132700 Rhododendron simsii HOM05D005456 ORTHO05D006805 7.6e-09 66.2 423 23.2
GSVIVG01003217001 Vitis vinifera HOM05D005456 ORTHO05D006805 2.9e-08 64.3 420 22.6
HanXRQChr15g0476951 Helianthus annuus HOM05D005456 ORTHO05D006805 6.4e-08 63.2 403 22.8
Ah.02g129440 Amaranthus hybridus HOM05D005456 ORTHO05D006805 8.4e-08 62.8 402 23.1
Peaxi162Scf00524g00007 Petunia axillaris HOM05D001309 ORTHO05D000385 1.1e-07 62.4 49 63.3
SGA_v2.0_scaffold455G51903 Striga asiatica HOM05D005456 ORTHO05D006805 1.1e-07 62.4 435 22.3
Peaxi162Scf00222g00327 Petunia axillaris HOM05D005456 ORTHO05D006805 1.9e-07 61.6 427 21.5
Nitab4.5_0000391g0340 Nicotiana tabacum HOM05D005456 ORTHO05D006805 4.2e-07 60.5 311 23.8
COL.COLO4_27983 Corchorus olitorius HOM05D005456 ORTHO05D006805 7.1e-07 59.7 435 23.2
MCO10G370 Micromonas commoda HOM05D001664 ORTHO05D001622 7.1e-07 59.7 379 25.9
Eucgr.B01036 Eucalyptus grandis HOM05D005456 ORTHO05D006805 2.1e-06 58.2 327 23.9
Migut.E00473 Erythranthe guttata HOM05D005416 ORTHO05D007956 2.7e-06 57.8 377 23.6
Atru.chr11.1727 Acer truncatum HOM05D005456 ORTHO05D006805 6.0e-06 56.6 410 22.0


User provided reference genes

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