Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.R76IPR Arachis hypogaea HOM05D003986 ORTHO05D004916 0.0e+00 3527.3 1887 100.0
arahy.Tifrunner.gnm1.ann1.374THF Arachis hypogaea HOM05D003986 ORTHO05D004916 0.0e+00 3446.8 1911 97.3
Glyma.08G048400 Glycine max HOM05D003986 ORTHO05D004916 0.0e+00 3022.6 1895 85.1
Glyma.05G241400 Glycine max HOM05D003986 ORTHO05D004916 0.0e+00 3003.8 1895 83.1
Lj4g0022556 Lotus japonicus HOM05D003986 ORTHO05D004916 0.0e+00 2940.6 1897 83.5
Phvul.002G324500 Phaseolus vulgaris HOM05D003986 ORTHO05D004916 0.0e+00 2937.5 1895 82.4
VMungo0251G0132 Vigna mungo HOM05D003986 ORTHO05D004916 0.0e+00 2929.4 1895 82.2
Lalb_Chr05g0222051 Lupinus albus HOM05D003986 ORTHO05D004916 0.0e+00 2918.6 1895 82.6
TPR.G12867 Trifolium pratense HOM05D003986 ORTHO05D004916 0.0e+00 2889.4 1894 82.8
Psat7g004480 Pisum sativum HOM05D003986 ORTHO05D004916 0.0e+00 2889.0 1893 81.5
Lalb_Chr16g0387401 Lupinus albus HOM05D003986 ORTHO05D004916 0.0e+00 2858.9 1892 80.9
Ca_17244_v3 Cicer arietinum L. HOM05D003986 ORTHO05D004916 0.0e+00 2852.0 1893 80.9
Medtr8g106090 Medicago truncatula HOM05D003986 ORTHO05D004916 0.0e+00 2809.6 1895 79.8
Medtr7g117220 Medicago truncatula HOM05D003986 ORTHO05D004916 0.0e+00 2741.5 1894 78.4
Dinv11756 Davidia involucrata HOM05D003986 ORTHO05D004916 0.0e+00 2638.6 1922 74.1
CiPaw.06G055800 Carya illinoinensis HOM05D003986 ORTHO05D004916 0.0e+00 2589.7 1913 73.6
Atru.chr11.800 Acer truncatum HOM05D003986 ORTHO05D004916 0.0e+00 2568.9 1915 73.5
Manes.17G086100 Manihot esculenta HOM05D003986 ORTHO05D004916 0.0e+00 2568.9 1916 73.1
Ca_29522_v3 Cicer arietinum L. HOM05D003986 ORTHO05D004916 0.0e+00 2533.1 1788 77.7
CANSAT78G0669 Cannabis sativa HOM05D003986 ORTHO05D004916 0.0e+00 2522.7 1905 72.1
Prupe.3G150800 Prunus persica HOM05D003986 ORTHO05D004916 0.0e+00 2515.0 1911 71.4
TWI74G0603 Tripterygium wilfordii HOM05D003986 ORTHO05D004916 0.0e+00 2504.6 1915 70.7
Actinidia12415 Actinidia chinensis HOM05D003986 ORTHO05D004916 0.0e+00 2503.4 1918 70.2
MELO3C005265.2 Cucumis melo HOM05D003986 ORTHO05D004916 0.0e+00 2500.3 1912 71.3
Sed0014719 Sechium edule HOM05D003986 ORTHO05D004916 0.0e+00 2492.6 1930 69.2
CsaV3_5G027880 Cucumis sativus L. HOM05D003986 ORTHO05D004916 0.0e+00 2492.2 1912 70.9
Potri.013G085000 Populus trichocarpa HOM05D003986 ORTHO05D004916 0.0e+00 2490.3 1913 70.4
GSVIVG01011619001 Vitis vinifera HOM05D003986 ORTHO05D004916 0.0e+00 2489.1 1899 71.2
MD09G1258800 Malus domestica HOM05D003986 ORTHO05D004916 0.0e+00 2483.8 1906 70.9
Gohir.A03G112200 Gossypium hirsutum HOM05D003986 ORTHO05D004916 0.0e+00 2476.8 1914 71.5
Potri.019G054600 Populus trichocarpa HOM05D003986 ORTHO05D004916 0.0e+00 2475.3 1908 70.8
Gorai.005G152800 Gossypium raimondii HOM05D003986 ORTHO05D004916 0.0e+00 2458.7 1915 70.9
ClCG01G006690 Citrullus lanatus HOM05D003986 ORTHO05D004916 0.0e+00 2429.8 2123 64.7
Eucgr.B02697 Eucalyptus grandis HOM05D003986 ORTHO05D004916 0.0e+00 2427.9 1905 68.8
Nn4g24477 Nelumbo nucifera HOM05D003986 ORTHO05D004916 0.0e+00 2401.3 1914 68.3
Thecc.02G306600 Theobroma cacao HOM05D003986 ORTHO05D004916 0.0e+00 2395.2 1908 69.5
Peaxi162Scf00937g00119 Petunia axillaris HOM05D003986 ORTHO05D004916 0.0e+00 2389.8 1912 69.2
QL03p038358 Quercus lobata HOM05D003986 ORTHO05D004916 0.0e+00 2385.5 1748 74.5
PGR142G4089 Punica granatum HOM05D003986 ORTHO05D004916 0.0e+00 2384.4 1907 68.5
DCAR_026811 Daucus carota HOM05D003986 ORTHO05D004916 0.0e+00 2380.1 1948 68.0
COL.COLO4_06656 Corchorus olitorius HOM05D003986 ORTHO05D004916 0.0e+00 2377.1 1947 68.9
Haze_08333 Corylus avellana HOM05D003986 ORTHO05D004916 0.0e+00 2371.7 2113 65.3
Dinv14386 Davidia involucrata HOM05D003986 ORTHO05D004916 0.0e+00 2364.0 1911 68.8
Sabra13G0078400 Salix brachista HOM05D003986 ORTHO05D004916 0.0e+00 2357.4 2004 66.6
Solyc05g017890.4 Solanum lycopersicum HOM05D003986 ORTHO05D004916 0.0e+00 2318.5 1905 69.2
Sopen05g014610 Solanum pennellii HOM05D003986 ORTHO05D004916 0.0e+00 2318.5 1905 68.9
MSTRG.2114 Avicennia marina HOM05D003986 ORTHO05D004916 0.0e+00 2308.9 1908 65.8
Migut.E00504 Erythranthe guttata HOM05D003986 ORTHO05D004916 0.0e+00 2298.5 1900 66.1
RcHm_v2.0_Chr4g0442311 Rosa chinensis HOM05D003986 ORTHO05D004916 0.0e+00 2295.0 1922 68.2
Aqoxy3G04028 Aquilegia oxysepala HOM05D003986 ORTHO05D004916 0.0e+00 2293.5 1904 65.8
CAN.G206.116 Capsicum annuum HOM05D003986 ORTHO05D004916 0.0e+00 2291.9 1913 67.9
PSO782G5475 Papaver somniferum HOM05D003986 ORTHO05D004916 0.0e+00 2269.2 1912 65.5
Sabra19G0063600 Salix brachista HOM05D003986 ORTHO05D004916 0.0e+00 2268.0 2244 57.9
EL10Ac6g14201 Beta vulgaris HOM05D003986 ORTHO05D004916 0.0e+00 2250.7 1906 66.5
ECA246G1343 Erigeron canadensis HOM05D003986 ORTHO05D004916 0.0e+00 2244.9 1891 65.8
Ah.02g127910 Amaranthus hybridus HOM05D003986 ORTHO05D004916 0.0e+00 2236.5 1912 65.1
CSS0009129 Camellia sinensis var. sinensis HOM05D003986 ORTHO05D004916 0.0e+00 2234.9 1753 70.5
TAR629G0821 Trochodendron aralioides HOM05D003986 ORTHO05D004916 0.0e+00 2233.0 1716 70.0
FAN07G2168 Fragaria x ananassa HOM05D003986 ORTHO05D004916 0.0e+00 2221.4 1924 65.2
PSO063G2585 Papaver somniferum HOM05D003986 ORTHO05D004916 0.0e+00 2220.7 1878 65.4
FvH4_4g33200 Fragaria vesca HOM05D003986 ORTHO05D004916 0.0e+00 2209.9 1925 65.9
FAN22G0296 Fragaria x ananassa HOM05D003986 ORTHO05D004916 0.0e+00 2204.9 1923 66.1
FAN12G0920 Fragaria x ananassa HOM05D003986 ORTHO05D004916 0.0e+00 2197.5 1929 65.8
HanXRQChr12g0381871 Helianthus annuus HOM05D003986 ORTHO05D004916 0.0e+00 2196.4 1901 65.1
AUR62038486 Chenopodium quinoa HOM05D003986 ORTHO05D004916 0.0e+00 2189.1 1873 65.6
THA.LOC104807876 Tarenaya hassleriana HOM05D003986 ORTHO05D004916 0.0e+00 2182.1 1915 63.1
AUR62014146 Chenopodium quinoa HOM05D003986 ORTHO05D004916 0.0e+00 2179.8 1936 64.4
ATR0021G052 Amborella trichopoda HOM05D003986 ORTHO05D004916 0.0e+00 2175.6 1917 63.1
FAN17G2354 Fragaria x ananassa HOM05D003986 ORTHO05D004916 0.0e+00 2173.3 1929 65.4
Aa31LG7G9380 Aethionema arabicum HOM05D003986 ORTHO05D004916 0.0e+00 2139.4 1909 64.6
Sp1g23110 Schrenkiella parvula HOM05D003986 ORTHO05D004916 0.0e+00 2133.6 1912 64.0
AL1G40240 Arabidopsis lyrata HOM05D003986 ORTHO05D004916 0.0e+00 2132.5 1911 63.3
SGA_v2.0_scaffold3G01767 Striga asiatica HOM05D003986 ORTHO05D004916 0.0e+00 2131.7 2004 61.9
AT1G24706 Arabidopsis thaliana HOM05D003986 ORTHO05D004916 0.0e+00 2125.9 1910 62.7
A08p26750 Brassica napus HOM05D003986 ORTHO05D004916 0.0e+00 2125.1 1900 63.7
C03p73260 Brassica napus HOM05D003986 ORTHO05D004916 0.0e+00 2125.1 1904 64.4
Sc14g0006590 Simmondsia chinensis HOM05D003986 ORTHO05D004916 0.0e+00 2124.7 1804 65.2
THA.LOC104825570 Tarenaya hassleriana HOM05D003986 ORTHO05D004916 0.0e+00 2120.9 1917 65.2
CARHR026420 Cardamine hirsuta HOM05D003986 ORTHO05D004916 0.0e+00 2119.4 1880 64.9
Carub.0001s2544 Capsella rubella HOM05D003986 ORTHO05D004916 0.0e+00 2115.1 1907 63.6
BolC3t19622H Brassica oleracea HOM05D003986 ORTHO05D004916 0.0e+00 2109.7 1904 64.0
BraA08t34620Z Brassica rapa HOM05D003986 ORTHO05D004916 0.0e+00 2101.2 1905 63.0
unitig_8.g4016 Utricularia gibba HOM05D003986 ORTHO05D004916 0.0e+00 2090.1 1995 59.7
Oeu006345.3 Olea europaea HOM05D003986 ORTHO05D004916 0.0e+00 2080.4 1945 62.1
HPP92_004743 Vanilla planifolia HOM05D003986 ORTHO05D004916 0.0e+00 2060.0 1906 61.2
Thhalv10006540m.g Eutrema salsugineum HOM05D003986 ORTHO05D004916 0.0e+00 2029.6 1909 62.3
Lsat_1_v5_gn_3_102381 Lactuca sativa HOM05D003986 ORTHO05D004916 0.0e+00 1978.8 1341 75.0
CSS0026713 Camellia sinensis var. sinensis HOM05D003986 ORTHO05D004916 0.0e+00 1910.6 1531 69.8
Lj3C862T8 Lonicera japonica HOM05D003986 ORTHO05D004916 0.0e+00 1821.6 1517 67.4
Mapoly0001s0369 Marchantia polymorpha HOM05D003986 ORTHO05D004916 0.0e+00 1788.5 2012 53.7
Zm00001eb156750 Zea mays HOM05D003986 ORTHO05D004916 0.0e+00 1785.8 1880 54.8
AagrBONN_evm.TU.Sc2ySwM_117.1912 Anthoceros agrestis HOM05D003986 ORTHO05D004916 0.0e+00 1748.0 1998 53.4
Pp3c11_17570 Physcomitrium patens HOM05D003986 ORTHO05D004916 0.0e+00 1674.8 1844 52.8
SMO145G0041 Selaginella moellendorffii HOM05D003986 ORTHO05D004916 0.0e+00 1595.5 1901 53.8
Os01g0916800 Oryza sativa ssp. japonica HOM05D003986 ORTHO05D004916 0.0e+00 1579.3 1918 50.3
Gohir.D02G136832 Gossypium hirsutum HOM05D003986 ORTHO05D004916 0.0e+00 1481.1 937 80.4
Ciclev10014076m.g Citrus clementina HOM05D003986 ORTHO05D004916 0.0e+00 1460.7 1224 68.6
Nitab4.5_0004735g0030 Nicotiana tabacum HOM05D003986 ORTHO05D004916 0.0e+00 1427.9 1284 65.7
Nitab4.5_0000011g0120 Nicotiana tabacum HOM05D003986 ORTHO05D004916 0.0e+00 1410.6 1308 65.0
Hund24923 Selenicereus undatus HOM05D003986 ORTHO05D004916 0.0e+00 1407.1 1098 69.9
BcaB03g12045 Brassica carinata HOM05D003986 ORTHO05D004916 0.0e+00 1304.3 1506 54.4
SalBow2G1878 Salvia bowleyana HOM05D003986 ORTHO05D004916 0.0e+00 1290.8 1233 61.6
CDE05G3646 Ceratophyllum demersum HOM05D003986 ORTHO05D004916 0.0e+00 1193.7 851 72.3
SHI04403 Sapria himalayana HOM05D003986 ORTHO05D004916 0.0e+00 1140.2 955 65.0
Cpa.g.sc2.153 Carica papaya HOM05D003986 ORTHO05D004916 0.0e+00 1125.2 1112 62.0
CBR_g39719 Chara braunii HOM05D003986 ORTHO05D004916 1.3e-298 1030.8 1357 45.0
Ciclev10017843m.g Citrus clementina HOM05D003986 ORTHO05D004916 8.6e-290 1001.5 674 75.8
CDE05G1820 Ceratophyllum demersum HOM05D003986 ORTHO05D004916 5.0e-282 975.7 1156 55.4
CAN.G71.2 Capsicum annuum HOM05D003986 ORTHO05D004916 4.7e-280 969.1 703 74.7
Gohir.D02G136766 Gossypium hirsutum HOM05D003986 ORTHO05D004916 2.1e-240 837.4 887 59.8
MCO13G375 Micromonas commoda HOM05D003986 ORTHO05D004916 2.9e-221 773.9 1334 37.5
BcaC05g26698 Brassica carinata HOM05D003986 ORTHO05D004916 2.2e-213 747.7 1143 43.8
CDE05G1425 Ceratophyllum demersum HOM05D003986 ORTHO05D004916 4.7e-211 740.0 987 52.9
Cpa.g.sc2.149 Carica papaya HOM05D003986 ORTHO05D004916 1.8e-207 728.0 448 84.8
Lj3P862T26 Lonicera japonica HOM05D003986 ORTHO05D004916 3.6e-171 607.4 374 80.2
PRCOL_00006124 Prasinoderma coloniale HOM05D003986 ORTHO05D004916 4.7e-155 553.9 1186 33.4
Nitab4.5_0000011g0130 Nicotiana tabacum HOM05D003986 ORTHO05D004916 4.4e-153 547.4 366 74.9
CDE05G1569 Ceratophyllum demersum HOM05D003986 ORTHO05D004916 1.3e-141 509.2 369 69.4
Nitab4.5_0004735g0040 Nicotiana tabacum HOM05D003986 ORTHO05D004916 2.5e-140 505.0 367 70.3
Rhsim04G0125900 Rhododendron simsii HOM05D003986 ORTHO05D004916 9.0e-114 416.8 498 50.8
BcaB03g12046 Brassica carinata HOM05D003986 ORTHO05D004916 7.9e-110 403.7 284 71.8
CAN.G71.1 Capsicum annuum HOM05D003986 ORTHO05D004916 1.4e-93 349.7 524 53.4
Nitab4.5_0000011g0140 Nicotiana tabacum HOM05D003986 ORTHO05D004916 6.7e-93 347.4 239 76.2
COL.COLO4_04150 Corchorus olitorius HOM05D003986 ORTHO05D004916 4.8e-91 341.3 297 63.0
Nitab4.5_0004735g0050 Nicotiana tabacum HOM05D003986 ORTHO05D004916 7.7e-89 334.0 262 69.8
Rhsim09G0087200 Rhododendron simsii HOM05D003986 ORTHO05D004916 1.7e-88 332.8 198 82.8
AagrBONN_evm.TU.Sc2ySwM_368.2552 Anthoceros agrestis HOM05D003986 ORTHO05D004916 2.9e-88 332.0 214 75.2
TAR371G1117 Trochodendron aralioides HOM05D003986 ORTHO05D004916 2.6e-84 318.9 568 42.4
Cre12.g507700 Chlamydomonas reinhardtii HOM05D003986 ORTHO05D004916 5.5e-79 301.2 1133 26.6
Ca_30366_v3 Cicer arietinum L. HOM05D003986 ORTHO05D004916 1.8e-77 296.2 170 84.7
Cfa024658 Carpinus fangiana HOM05D003986 ORTHO05D004916 3.7e-75 288.5 1529 24.8
C05p25490 Brassica napus HOM05D003986 ORTHO05D004916 3.5e-73 282.0 263 58.9
Lsat_1_v5_gn_3_86221 Lactuca sativa HOM05D003986 ORTHO05D004916 3.1e-61 242.3 224 61.6
TAR371G0322 Trochodendron aralioides HOM05D003986 ORTHO05D004916 4.1e-58 231.9 508 35.2
BolC5t31277H Brassica oleracea HOM05D003986 ORTHO05D004916 1.2e-54 220.3 190 62.1
BcaB05g22549 Brassica carinata HOM05D003986 ORTHO05D004916 1.4e-53 216.9 243 53.1
Rhsim04G0143900 Rhododendron simsii HOM05D003986 ORTHO05D004916 2.6e-52 212.6 237 53.6
Hund24924 Selenicereus undatus HOM05D008000 ORTHO05D010275 1.3e-51 210.3 170 62.9
SHI04410 Sapria himalayana HOM05D003986 ORTHO05D004916 1.7e-48 199.9 163 63.2
Actinidia23394 Actinidia chinensis HOM05D003986 ORTHO05D004916 2.3e-48 199.5 427 39.6
Rhsim04G0143600 Rhododendron simsii HOM05D003986 ORTHO05D004916 3.9e-48 198.7 274 48.9
Rhsim04G0143700 Rhododendron simsii HOM05D003986 ORTHO05D004916 8.4e-43 181.0 221 48.0
SHI04405 Sapria himalayana HOM05D003986 ORTHO05D004916 2.5e-39 169.5 106 74.5
RcHm_v2.0_Chr2g0110801 Rosa chinensis HOM05D003986 ORTHO05D004916 3.1e-37 162.5 89 84.3
TAR629G2897 Trochodendron aralioides HOM05D003986 ORTHO05D004916 5.2e-37 161.8 125 66.4
Sabra18G0054000 Salix brachista HOM05D003986 ORTHO05D004916 1.2e-28 134.0 143 59.4
Lalb_Chr18g0049821 Lupinus albus HOM05D003986 ORTHO05D004916 7.6e-28 131.3 75 90.7
MBI18_g21002_MAGBIO Magnolia biondii HOM05D003986 ORTHO05D004916 1.4e-26 127.1 105 67.6
Lalb_Chr18g0050041 Lupinus albus HOM05D003986 ORTHO05D004916 1.2e-25 124.0 69 92.8
Cpa.g.c39725 Carica papaya HOM05D003986 ORTHO05D004916 1.6e-25 123.6 87 69.0
Ciclev10015223m.g Citrus clementina HOM05D000271 ORTHO05D002152 1.9e-23 116.7 81 76.5
BcaC05g26498 Brassica carinata HOM05D003986 ORTHO05D004916 3.6e-22 112.5 75 78.7
Cpa.g.sc2.147 Carica papaya HOM05D003986 ORTHO05D004916 4.8e-22 112.1 61 86.9
CSS0042784 Camellia sinensis var. sinensis HOM05D003986 ORTHO05D004916 2.2e-19 103.2 80 60.0
Sabra18G0053100 Salix brachista HOM05D003986 ORTHO05D004078 4.2e-18 99.0 80 67.5
Sabra18G0052900 Salix brachista HOM05D003986 ORTHO05D004916 2.1e-17 96.7 58 82.8
Sabra18G0053600 Salix brachista HOM05D003986 ORTHO05D004916 2.1e-17 96.7 58 82.8
Cpa.g.sc2.145 Carica papaya HOM05D003986 ORTHO05D004916 7.9e-17 94.7 128 48.4
Actinidia23393 Actinidia chinensis HOM05D003986 ORTHO05D004916 1.0e-16 94.4 148 39.9
Sabra18G0053500 Salix brachista HOM05D003986 ORTHO05D004916 1.8e-16 93.6 58 81.0
Atru.chr2.736 Acer truncatum HOM05D003986 ORTHO05D004916 2.3e-16 93.2 86 54.7
Psat0s3352g0200 Pisum sativum HOM05D003986 ORTHO05D020973 1.3e-14 87.4 51 92.2
Lalb_Chr05g0227571 Lupinus albus HOM05D003986 ORTHO05D004916 2.1e-14 86.7 41 97.6
COL.COLO4_04151 Corchorus olitorius HOM05D003986 ORTHO05D004916 1.1e-13 84.3 73 60.3
VMungo0465G0002 Vigna mungo HOM05D003986 ORTHO05D004916 1.1e-13 84.3 58 74.1
VMungo0266G0001 Vigna mungo HOM05D000230 ORTHO05D000176 1.8e-13 83.6 61 70.5
Psat0s3352g0120 Pisum sativum HOM05D003435 ORTHO05D020973 9.0e-13 81.3 48 79.2
COL.COLO4_22391 Corchorus olitorius HOM05D002579 ORTHO05D002775 3.4e-12 79.3 36 97.2
TPR.G39728 Trifolium pratense HOM05D003986 ORTHO05D004916 1.0e-11 77.8 78 55.1
CsaV3_1G014700 Cucumis sativus L. HOM05D003986 ORTHO05D004916 2.1e-09 70.1 95 45.3
COL.COLO4_22474 Corchorus olitorius HOM05D002548 ORTHO05D003031 4.6e-09 68.9 66 51.5
Sabra18G0053300 Salix brachista HOM05D003986 ORTHO05D004916 4.3e-07 62.4 59 57.6
FAN07G2130 Fragaria x ananassa HOM05D003986 ORTHO05D004916 9.6e-07 61.2 165 56.4


User provided reference genes

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