Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.R5BCDI Arachis hypogaea HOM05D000350 ORTHO05D000228 1.3e-141 506.5 284 100.0
arahy.Tifrunner.gnm1.ann1.W24P9U Arachis hypogaea HOM05D000350 ORTHO05D000228 2.5e-44 183.3 152 82.2
arahy.Tifrunner.gnm1.ann1.8Y049H Arachis hypogaea HOM05D000350 ORTHO05D000228 3.2e-31 139.8 87 82.8
arahy.Tifrunner.gnm1.ann1.N7WF48 Arachis hypogaea HOM05D000350 ORTHO05D000228 3.2e-31 139.8 87 82.8
ClCG01G008210 Citrullus lanatus HOM05D000350 ORTHO05D000228 4.2e-31 139.4 154 52.6
VMungo0720G1336 Vigna mungo HOM05D000350 ORTHO05D000228 1.2e-30 137.9 154 59.1
Thecc.02G156700 Theobroma cacao HOM05D000350 ORTHO05D000228 3.6e-30 136.3 154 65.6
Phvul.007G015000 Phaseolus vulgaris HOM05D000350 ORTHO05D000228 2.3e-29 133.7 154 57.1
COL.COLO4_33084 Corchorus olitorius HOM05D000350 ORTHO05D000228 3.0e-29 133.3 154 63.6
Glyma.10G285900 Glycine max HOM05D000350 ORTHO05D000228 1.5e-28 131.0 153 67.3
MELO3C025049.2 Cucumis melo HOM05D000350 ORTHO05D000228 3.3e-28 129.8 158 46.8
THA.LOC104800669 Tarenaya hassleriana HOM05D000350 ORTHO05D000228 4.3e-28 129.4 157 62.4
Gohir.A03G165900 Gossypium hirsutum HOM05D000350 ORTHO05D000228 2.2e-27 127.1 156 62.8
Duzib248G0707 Durio zibethinus HOM05D000350 ORTHO05D000228 4.8e-27 125.9 156 62.2
Lalb_Chr10g0094891 Lupinus albus HOM05D000350 ORTHO05D000228 4.8e-27 125.9 156 58.3
Gohir.D02G189100 Gossypium hirsutum HOM05D000350 ORTHO05D000228 1.8e-26 124.0 156 64.1
Gorai.005G211900 Gossypium raimondii HOM05D000350 ORTHO05D000228 1.8e-26 124.0 156 64.1
TPR.G4077 Trifolium pratense HOM05D000350 ORTHO05D000228 1.8e-26 124.0 160 64.4
Gorai.013G068600 Gossypium raimondii HOM05D000350 ORTHO05D000228 4.1e-26 122.9 156 64.1
MELO3C025357.2 Cucumis melo HOM05D000350 ORTHO05D000228 5.3e-26 122.5 176 42.6
CsaV3_5G020710 Cucumis sativus L. HOM05D000350 ORTHO05D000228 5.3e-26 122.5 176 42.6
Gohir.D13G060500 Gossypium hirsutum HOM05D000350 ORTHO05D000228 2.0e-25 120.6 156 63.5
Duzib052G0698 Durio zibethinus HOM05D000350 ORTHO05D000228 3.4e-25 119.8 156 62.8
Potri.007G074028 Populus trichocarpa HOM05D000350 ORTHO05D000228 4.5e-25 119.4 162 48.1
Duzib132G0755 Durio zibethinus HOM05D000350 ORTHO05D000228 5.9e-25 119.0 156 62.8
Cpa.g.sc60.75 Carica papaya HOM05D000350 ORTHO05D000228 7.7e-25 118.6 132 63.6
Gohir.A12G133100 Gossypium hirsutum HOM05D000350 ORTHO05D000228 1.0e-24 118.2 154 51.3
Gohir.D12G136600 Gossypium hirsutum HOM05D000350 ORTHO05D000228 1.3e-24 117.9 154 50.6
Gorai.008G147800 Gossypium raimondii HOM05D000350 ORTHO05D000228 1.3e-24 117.9 154 50.6
Sabra05G0074400 Salix brachista HOM05D000350 ORTHO05D000228 1.3e-24 117.9 163 54.6
Sabra07G0062000 Salix brachista HOM05D000350 ORTHO05D000228 1.3e-24 117.9 162 48.1
Potri.005G090300 Populus trichocarpa HOM05D000350 ORTHO05D000228 2.2e-24 117.1 163 54.0
Gohir.A13G061400 Gossypium hirsutum HOM05D000350 ORTHO05D000228 3.8e-24 116.3 156 63.5
Lalb_Chr02g0143611 Lupinus albus HOM05D000350 ORTHO05D000228 6.5e-24 115.5 154 64.9
Medtr1g114380 Medicago truncatula HOM05D000350 ORTHO05D000228 6.5e-24 115.5 156 62.8
MELO3C011754.2 Cucumis melo HOM05D000350 ORTHO05D000228 8.5e-24 115.2 123 50.4
Glyma.20G103400 Glycine max HOM05D000350 ORTHO05D000228 1.1e-23 114.8 158 62.7
Lalb_Chr06g0163911 Lupinus albus HOM05D000350 ORTHO05D000228 1.1e-23 114.8 154 64.9
Psat6g233680 Pisum sativum HOM05D000350 ORTHO05D000228 1.9e-23 114.0 157 61.8
ClCG02G014110 Citrullus lanatus HOM05D000350 ORTHO05D000228 3.2e-23 113.2 123 49.6
Lj5g0018781 Lotus japonicus HOM05D000350 ORTHO05D000228 1.2e-22 111.3 160 60.6
Ciclev10032441m.g Citrus clementina HOM05D000350 ORTHO05D000228 1.6e-22 110.9 158 52.5
CsaV3_5G006010 Cucumis sativus L. HOM05D000350 ORTHO05D000228 1.6e-22 110.9 121 49.6
Glyma.09G284300 Glycine max HOM05D000350 ORTHO05D000228 7.9e-22 108.6 158 54.4
Glyma.09G284500 Glycine max HOM05D000350 ORTHO05D000228 7.9e-22 108.6 158 54.4
TWI53G0636 Tripterygium wilfordii HOM05D000350 ORTHO05D000228 3.9e-21 106.3 157 58.0
Sp2g23870 Schrenkiella parvula HOM05D000350 ORTHO05D000228 6.7e-21 105.5 152 56.6
TWI74G0100 Tripterygium wilfordii HOM05D000350 ORTHO05D000228 1.5e-20 104.4 157 57.3
CiPaw.05G171000 Carya illinoinensis HOM05D000350 ORTHO05D000228 2.0e-20 104.0 157 56.1
RcHm_v2.0_Chr4g0398661 Rosa chinensis HOM05D000350 ORTHO05D000228 2.0e-20 104.0 167 44.3
Glyma.20G001600 Glycine max HOM05D000350 ORTHO05D000228 2.6e-20 103.6 158 51.9
TWI77G0512 Tripterygium wilfordii HOM05D000350 ORTHO05D000228 9.7e-20 101.7 156 57.1
Thhalv10004796m.g Eutrema salsugineum HOM05D000350 ORTHO05D000228 1.7e-19 100.9 153 55.6
Nitab4.5_0001089g0050 Nicotiana tabacum HOM05D000350 ORTHO05D000228 4.8e-19 99.4 166 43.4
Nitab4.5_0011777g0010 Nicotiana tabacum HOM05D000350 ORTHO05D000228 6.3e-19 99.0 166 43.4
Prupe.1G070500 Prunus persica HOM05D000350 ORTHO05D000228 8.2e-19 98.6 173 49.7
CiPaw.06G062000 Carya illinoinensis HOM05D000350 ORTHO05D000228 2.4e-18 97.1 155 54.8
Atru.chr11.1115 Acer truncatum HOM05D000350 ORTHO05D000228 3.1e-18 96.7 134 50.7
BcaC04g23486 Brassica carinata HOM05D000350 ORTHO05D000228 4.1e-18 96.3 152 57.2
Phvul.003G003300 Phaseolus vulgaris HOM05D000350 ORTHO05D000228 4.1e-18 96.3 159 50.9
TAR622G0707 Trochodendron aralioides HOM05D000350 ORTHO05D000228 4.1e-18 96.3 158 43.7
Manes.11G108500 Manihot esculenta HOM05D000350 ORTHO05D000228 9.1e-18 95.1 143 60.1
MD13G1238400 Malus domestica HOM05D000350 ORTHO05D000228 1.2e-17 94.7 181 49.7
CSS0007455 Camellia sinensis var. sinensis HOM05D000350 ORTHO05D000228 1.5e-17 94.4 158 46.2
CSS0030311 Camellia sinensis var. sinensis HOM05D000350 ORTHO05D000228 1.5e-17 94.4 158 46.2
MBI06_g27501_MAGBIO Magnolia biondii HOM05D000350 ORTHO05D000228 1.5e-17 94.4 158 43.7
AL6G34540 Arabidopsis lyrata HOM05D000350 ORTHO05D000228 2.6e-17 93.6 155 52.9
TAR629G0849 Trochodendron aralioides HOM05D000350 ORTHO05D000228 3.4e-17 93.2 158 41.1
MD16G1243300 Malus domestica HOM05D000350 ORTHO05D000228 4.5e-17 92.8 175 50.3
CARHR190260 Cardamine hirsuta HOM05D000350 ORTHO05D000228 1.3e-16 91.3 158 49.4
Peaxi162Scf00681g00014 Petunia axillaris HOM05D000350 ORTHO05D000228 1.3e-16 91.3 142 42.3
QL06p051233 Quercus lobata HOM05D000350 ORTHO05D000228 1.3e-16 91.3 153 54.2
Haze_11778 Corylus avellana HOM05D000350 ORTHO05D000228 2.2e-16 90.5 130 60.8
Sed0018768 Sechium edule HOM05D000350 ORTHO05D000228 2.2e-16 90.5 154 45.5
AT5G23280 Arabidopsis thaliana HOM05D000350 ORTHO05D000228 3.8e-16 89.7 155 53.5
Dinv18421 Davidia involucrata HOM05D000350 ORTHO05D000228 3.8e-16 89.7 161 41.6
Rhsim09G0069700 Rhododendron simsii HOM05D000350 ORTHO05D000228 5.0e-16 89.4 166 41.6
C09p07840 Brassica napus HOM05D000350 ORTHO05D000228 1.1e-15 88.2 152 51.3
BolC9t53700H Brassica oleracea HOM05D000350 ORTHO05D000228 1.1e-15 88.2 152 51.3
Lj3P847T38 Lonicera japonica HOM05D000350 ORTHO05D000228 1.1e-15 88.2 163 39.3
TAR371G1151 Trochodendron aralioides HOM05D000350 ORTHO05D000228 1.4e-15 87.8 160 40.6
CANSAT78G1268 Cannabis sativa HOM05D000350 ORTHO05D000228 1.9e-15 87.4 164 42.1
MSTRG.11569 Avicennia marina HOM05D000350 ORTHO05D000228 2.5e-15 87.0 155 47.1
A06p34240 Brassica napus HOM05D000350 ORTHO05D000228 3.2e-15 86.7 152 55.3
BraA06t26356Z Brassica rapa HOM05D000350 ORTHO05D000228 3.2e-15 86.7 152 55.3
VMungo0251G3191 Vigna mungo HOM05D000350 ORTHO05D000228 3.2e-15 86.7 159 53.5
Carub.0006s2105 Capsella rubella HOM05D000350 ORTHO05D000228 4.2e-15 86.3 161 50.9
PGR142G3796 Punica granatum HOM05D000350 ORTHO05D000228 4.2e-15 86.3 137 56.9
Sopen04g004310 Solanum pennellii HOM05D000350 ORTHO05D000228 5.5e-15 85.9 111 47.7
Psat6g099920 Pisum sativum HOM05D000350 ORTHO05D000228 9.4e-15 85.1 158 47.5
Sed0007315 Sechium edule HOM05D000350 ORTHO05D000228 9.4e-15 85.1 120 44.2
Cfa008766 Carpinus fangiana HOM05D000350 ORTHO05D000228 2.1e-14 84.0 131 59.5
Lsat_1_v5_gn_3_36601 Lactuca sativa HOM05D000350 ORTHO05D000228 2.1e-14 84.0 156 39.1
Oeu038393.1 Olea europaea HOM05D000350 ORTHO05D000228 2.1e-14 84.0 170 44.7
BcaB04g19882 Brassica carinata HOM05D000350 ORTHO05D000228 2.7e-14 83.6 152 48.0
TPR.G29793 Trifolium pratense HOM05D000350 ORTHO05D000228 2.7e-14 83.6 162 47.5
A09p07030 Brassica napus HOM05D000350 ORTHO05D000228 3.6e-14 83.2 152 50.0
Dinv17640 Davidia involucrata HOM05D000350 ORTHO05D000228 3.6e-14 83.2 128 40.6
HanXRQChr17g0541411 Helianthus annuus HOM05D000350 ORTHO05D000228 3.6e-14 83.2 156 40.4
PGSC0003DMG400016363 Solanum tuberosum HOM05D005624 ORTHO05D006896 3.6e-14 83.2 168 38.7
BcaB04g19884 Brassica carinata HOM05D000350 ORTHO05D000228 7.9e-14 82.0 152 50.0
Migut.O00286 Erythranthe guttata HOM05D000350 ORTHO05D000228 7.9e-14 82.0 167 51.5
Solyc04g009180.3 Solanum lycopersicum HOM05D000350 ORTHO05D000228 7.9e-14 82.0 164 51.2
CDE04G2137 Ceratophyllum demersum HOM05D000350 ORTHO05D000228 1.0e-13 81.6 159 42.8
SGA_v2.0_scaffold25G10723 Striga asiatica HOM05D000350 ORTHO05D000228 5.2e-13 79.3 161 47.2
BraA09t36351Z Brassica rapa HOM05D000350 ORTHO05D000228 6.7e-13 79.0 152 48.0
Lsat_1_v5_gn_4_64660 Lactuca sativa HOM05D000350 ORTHO05D000228 6.7e-13 79.0 162 37.7
MBI03_g13826_MAGBIO Magnolia biondii HOM05D000350 ORTHO05D000228 6.7e-13 79.0 159 41.5
C07p44280 Brassica napus HOM05D000350 ORTHO05D000228 8.8e-13 78.6 151 52.3
Ca_12384_v3 Cicer arietinum L. HOM05D000350 ORTHO05D000228 8.8e-13 78.6 157 48.4
BolC7t44951H Brassica oleracea HOM05D000350 ORTHO05D000228 1.1e-12 78.2 151 51.0
ECA246G0165 Erigeron canadensis HOM05D000350 ORTHO05D000228 1.1e-12 78.2 164 37.2
Medtr1g038650 Medicago truncatula HOM05D000350 ORTHO05D000228 1.1e-12 78.2 167 50.3
Solyc01g008230.4 Solanum lycopersicum HOM05D000350 ORTHO05D000228 1.1e-12 78.2 170 37.6
Sopen01g003750 Solanum pennellii HOM05D000350 ORTHO05D000228 1.1e-12 78.2 170 37.6
unitig_22.g5318 Utricularia gibba HOM05D000350 ORTHO05D000228 1.5e-12 77.8 158 43.0
Actinidia25178 Actinidia chinensis HOM05D000350 ORTHO05D000228 2.0e-12 77.4 97 46.4
DCAR_026883 Daucus carota HOM05D000350 ORTHO05D000228 2.0e-12 77.4 141 39.7
Carub.0006s0722 Capsella rubella HOM05D000350 ORTHO05D000228 2.6e-12 77.0 162 50.6
Nitab4.5_0004301g0070 Nicotiana tabacum HOM05D000350 ORTHO05D000228 2.6e-12 77.0 165 39.4
HanXRQChr14g0454301 Helianthus annuus HOM05D000350 ORTHO05D000228 3.3e-12 76.6 130 40.0
Nitab4.5_0000069g0220 Nicotiana tabacum HOM05D000350 ORTHO05D000228 3.3e-12 76.6 165 47.9
unitig_26.g10117 Utricularia gibba HOM05D000350 ORTHO05D000228 4.4e-12 76.3 157 35.7
A02p41040 Brassica napus HOM05D000350 ORTHO05D000228 7.4e-12 75.5 151 48.3
BraA02t09051Z Brassica rapa HOM05D000350 ORTHO05D000228 7.4e-12 75.5 151 42.4
CDE02G4099 Ceratophyllum demersum HOM05D000350 ORTHO05D000228 7.4e-12 75.5 160 37.5
Sed0007987 Sechium edule HOM05D000350 ORTHO05D000228 9.7e-12 75.1 152 36.8
Lj6C716T2 Lonicera japonica HOM05D000350 ORTHO05D000228 1.7e-11 74.3 145 37.9
CDE04G3361 Ceratophyllum demersum HOM05D006560 ORTHO05D008164 2.2e-11 73.9 158 37.3
AT5G08330 Arabidopsis thaliana HOM05D000350 ORTHO05D000228 2.8e-11 73.6 162 45.7
BcaC03g18030 Brassica carinata HOM05D000350 ORTHO05D000228 2.8e-11 73.6 153 38.6
C02p60930 Brassica napus HOM05D000350 ORTHO05D000228 2.8e-11 73.6 153 38.6
BolC2t12143H Brassica oleracea HOM05D000350 ORTHO05D000228 2.8e-11 73.6 153 38.6
DCAR_002594 Daucus carota HOM05D000350 ORTHO05D000228 3.7e-11 73.2 161 37.3
Hma1.2p1_0513F.1_g169450 Hydrangea macrophylla HOM05D000350 ORTHO05D000228 3.7e-11 73.2 164 36.6
AL6G18760 Arabidopsis lyrata HOM05D000350 ORTHO05D000228 4.8e-11 72.8 163 49.1
CARHR204770 Cardamine hirsuta HOM05D000350 ORTHO05D000228 6.3e-11 72.4 166 40.4
Peaxi162Scf00021g00213 Petunia axillaris HOM05D000350 ORTHO05D000228 6.3e-11 72.4 162 38.9
C03p04240 Brassica napus HOM05D000350 ORTHO05D000228 1.1e-10 71.6 161 46.6
BolC3t12956H Brassica oleracea HOM05D000350 ORTHO05D000228 1.1e-10 71.6 161 46.6
BcaB01g05614 Brassica carinata HOM05D000350 ORTHO05D000228 1.4e-10 71.2 161 46.6
HPP92_008576 Vanilla planifolia HOM05D000350 ORTHO05D000228 1.4e-10 71.2 161 33.5
A03p03760 Brassica napus HOM05D000350 ORTHO05D000228 1.8e-10 70.9 160 48.8
BraA03t09723Z Brassica rapa HOM05D000350 ORTHO05D000228 1.8e-10 70.9 160 48.8
Sp6g34620 Schrenkiella parvula HOM05D000350 ORTHO05D000228 1.8e-10 70.9 165 44.8
BraA10t44882Z Brassica rapa HOM05D000350 ORTHO05D000228 2.4e-10 70.5 158 39.9
Cc07_g19520 Coffea canephora HOM05D000350 ORTHO05D000228 3.1e-10 70.1 161 34.8
Thhalv10014503m.g Eutrema salsugineum HOM05D000350 ORTHO05D000228 4.1e-10 69.7 166 47.0
Lj6C711T10 Lonicera japonica HOM05D000350 ORTHO05D000228 4.1e-10 69.7 145 36.6
SalBow5G3801 Salvia bowleyana HOM05D000350 ORTHO05D000228 5.3e-10 69.3 103 45.6
HPP92_005059 Vanilla planifolia HOM05D000350 ORTHO05D000228 7.0e-10 68.9 187 31.6
unitig_8.g3768 Utricularia gibba HOM05D000350 ORTHO05D000228 9.1e-10 68.6 158 41.1
unitig_749.g13723 Utricularia gibba HOM05D000350 ORTHO05D000228 1.2e-09 68.2 155 32.3
A10p28350 Brassica napus HOM05D000350 ORTHO05D000228 1.6e-09 67.8 158 47.5
BolC9t59604H Brassica oleracea HOM05D000350 ORTHO05D000228 1.6e-09 67.8 158 47.5
Ca_12385_v3 Cicer arietinum L. HOM05D000350 ORTHO05D000228 2.0e-09 67.4 157 46.5
Ca_30640_v3 Cicer arietinum L. HOM05D000350 ORTHO05D000228 2.0e-09 67.4 157 46.5
Os02g0828566 Oryza sativa ssp. japonica HOM05D000350 ORTHO05D000228 3.5e-09 66.6 144 38.2
Aa31LG3G18240 Aethionema arabicum HOM05D000350 ORTHO05D000228 4.5e-09 66.2 164 35.4
BcaC03g13223 Brassica carinata HOM05D000350 ORTHO05D000228 5.9e-09 65.9 163 35.6
C02p03540 Brassica napus HOM05D000350 ORTHO05D000228 5.9e-09 65.9 163 35.6
BolC2t06313H Brassica oleracea HOM05D000350 ORTHO05D000228 5.9e-09 65.9 163 35.6
Cpa.g.sc175.10 Carica papaya HOM05D000350 ORTHO05D000228 5.9e-09 65.9 69 49.3
C09p68610 Brassica napus HOM05D000350 ORTHO05D000228 1.3e-08 64.7 158 46.8
BcaB01g05613 Brassica carinata HOM05D000350 ORTHO05D000228 3.8e-08 63.2 160 47.5
Hma1.2p1_0044F.1_g026165 Hydrangea macrophylla HOM05D000350 ORTHO05D000228 6.5e-08 62.4 140 33.6
BraA02t04952Z Brassica rapa HOM05D000350 ORTHO05D000228 1.1e-07 61.6 158 44.9
FAN17G0235 Fragaria x ananassa HOM05D000350 ORTHO05D000228 1.9e-07 60.8 89 44.9
FAN22G1817 Fragaria x ananassa HOM05D000350 ORTHO05D000228 1.9e-07 60.8 89 44.9
PSO782G4042 Papaver somniferum HOM05D000350 ORTHO05D000228 1.9e-07 60.8 174 36.2
Rhsim07G0144000 Rhododendron simsii HOM05D033466 ORTHO05D000228 1.9e-07 60.8 119 42.0
BcaB08g37263 Brassica carinata HOM05D000350 ORTHO05D000228 3.2e-07 60.1 153 44.4
BcaB08g37264 Brassica carinata HOM05D000350 ORTHO05D000228 3.2e-07 60.1 153 44.4
FvH4_4g06720 Fragaria vesca HOM05D000350 ORTHO05D000228 4.2e-07 59.7 89 43.8
FAN07G2238 Fragaria x ananassa HOM05D000350 ORTHO05D000228 4.2e-07 59.7 89 43.8
FAN12G3205 Fragaria x ananassa HOM05D000350 ORTHO05D000228 4.2e-07 59.7 89 43.8
Oeu034420.1 Olea europaea HOM05D000350 ORTHO05D000228 4.2e-07 59.7 172 32.6
PSO063G5927 Papaver somniferum HOM05D000350 ORTHO05D000228 7.2e-07 58.9 178 35.4
Sc10g0006860 Simmondsia chinensis HOM05D000350 ORTHO05D000228 4.7e-06 56.2 165 40.6


User provided reference genes

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