Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.R4IW6W Arachis hypogaea HOM05D004938 ORTHO05D006035 1.6e-106 390.2 334 100.0
arahy.Tifrunner.gnm1.ann1.7D2JYW Arachis hypogaea HOM05D004938 ORTHO05D006035 3.6e-66 256.1 334 47.6
arahy.Tifrunner.gnm1.ann1.LHV27P Arachis hypogaea HOM05D004938 ORTHO05D006035 1.4e-65 254.2 334 47.3
Ca_24383_v3 Cicer arietinum L. HOM05D004938 ORTHO05D006035 7.8e-53 211.8 334 39.8
Lalb_Chr06g0164791 Lupinus albus HOM05D004938 ORTHO05D006035 1.5e-51 207.6 329 39.2
TPR.G38053 Trifolium pratense HOM05D004938 ORTHO05D006035 3.3e-51 206.5 334 39.2
Psat4g211200 Pisum sativum HOM05D004938 ORTHO05D006035 5.6e-51 205.7 334 38.3
Glyma.11G004000 Glycine max HOM05D004938 ORTHO05D006035 7.3e-51 205.3 334 38.0
Lalb_Chr09g0319711 Lupinus albus HOM05D004938 ORTHO05D006035 1.8e-49 200.7 342 38.0
Phvul.002G047600 Phaseolus vulgaris HOM05D004938 ORTHO05D006035 6.9e-49 198.7 334 37.1
VMungo1215G0596 Vigna mungo HOM05D004938 ORTHO05D006035 2.0e-48 197.2 334 36.8
Prupe.1G154400 Prunus persica HOM05D004938 ORTHO05D006035 2.6e-48 196.8 334 37.1
Glyma.01G239700 Glycine max HOM05D004938 ORTHO05D006035 3.4e-48 196.4 334 37.7
Thecc.04G226400 Theobroma cacao HOM05D004938 ORTHO05D006035 3.4e-48 196.4 138 68.8
MD16G1187600 Malus domestica HOM05D004938 ORTHO05D006035 7.6e-48 195.3 334 37.4
MD13G1186700 Malus domestica HOM05D004938 ORTHO05D006035 2.2e-47 193.7 334 36.8
Lj1g0006253 Lotus japonicus HOM05D004938 ORTHO05D006035 2.9e-47 193.4 334 37.1
Cpa.g.sc147.28 Carica papaya HOM05D004938 ORTHO05D006035 3.8e-47 193.0 334 36.8
arahy.Tifrunner.gnm1.ann1.AAS7XX Arachis hypogaea HOM05D004938 ORTHO05D006035 6.4e-47 192.2 333 37.5
arahy.Tifrunner.gnm1.ann1.CBXD69 Arachis hypogaea HOM05D004938 ORTHO05D006035 6.4e-47 192.2 333 37.5
FvH4_4g14950 Fragaria vesca HOM05D004938 ORTHO05D006035 8.4e-47 191.8 334 37.4
FAN12G2708 Fragaria x ananassa HOM05D004938 ORTHO05D006035 8.4e-47 191.8 334 37.4
FAN07G1435 Fragaria x ananassa HOM05D004938 ORTHO05D006035 1.1e-46 191.4 334 37.4
FAN17G1823 Fragaria x ananassa HOM05D004938 ORTHO05D006035 1.1e-46 191.4 334 37.7
Haze_00935 Corylus avellana HOM05D004938 ORTHO05D006035 1.4e-46 191.0 137 65.7
Duzib212G0302 Durio zibethinus HOM05D004938 ORTHO05D006035 1.4e-46 191.0 146 65.1
GSVIVG01017919001 Vitis vinifera HOM05D004938 ORTHO05D006035 1.4e-46 191.0 138 65.2
QL06p003549 Quercus lobata HOM05D004938 ORTHO05D006035 1.9e-46 190.7 138 65.2
Nn1g02221 Nelumbo nucifera HOM05D004938 ORTHO05D006035 2.4e-46 190.3 138 66.7
Cfa015608 Carpinus fangiana HOM05D006587 ORTHO05D006035 7.1e-46 188.7 137 65.0
CiPaw.02G094500 Carya illinoinensis HOM05D004938 ORTHO05D006035 1.2e-45 188.0 138 66.7
Manes.03G181800 Manihot esculenta HOM05D004938 ORTHO05D006035 1.2e-45 188.0 343 36.4
Medtr5g005810 Medicago truncatula HOM05D004938 ORTHO05D006035 1.2e-45 188.0 334 35.6
Dinv44503 Davidia involucrata HOM05D004938 ORTHO05D006035 1.6e-45 187.6 138 64.5
ClCG06G005970 Citrullus lanatus HOM05D004938 ORTHO05D006035 2.7e-45 186.8 137 65.0
FAN22G0132 Fragaria x ananassa HOM05D004938 ORTHO05D006035 2.7e-45 186.8 334 37.1
Atru.chr4.2523 Acer truncatum HOM05D004938 ORTHO05D006035 3.5e-45 186.4 138 65.2
RcHm_v2.0_Chr4g0417151 Rosa chinensis HOM05D004938 ORTHO05D006035 4.6e-45 186.0 334 36.2
MSTRG.21840 Avicennia marina HOM05D004938 ORTHO05D006035 6.0e-45 185.7 138 63.0
Ciclev10004613m.g Citrus clementina HOM05D004938 ORTHO05D006035 1.0e-44 184.9 138 65.9
Peaxi162Scf01336g00121 Petunia axillaris HOM05D004938 ORTHO05D006035 1.0e-44 184.9 138 62.3
PGR004G1283 Punica granatum HOM05D004938 ORTHO05D006035 1.0e-44 184.9 336 36.3
Aqoxy2G03327 Aquilegia oxysepala HOM05D004938 ORTHO05D006035 1.7e-44 184.1 137 63.5
Solyc01g079720.3 Solanum lycopersicum HOM05D004938 ORTHO05D006035 1.7e-44 184.1 137 62.0
Oeu030329.2 Olea europaea HOM05D004938 ORTHO05D006035 3.0e-44 183.3 146 61.0
TAR633G0197 Trochodendron aralioides HOM05D004938 ORTHO05D006035 3.9e-44 183.0 138 64.5
Duzib151G0907 Durio zibethinus HOM05D004938 ORTHO05D006035 5.1e-44 182.6 342 34.8
ECA236G0716 Erigeron canadensis HOM05D004938 ORTHO05D006035 5.1e-44 182.6 138 63.0
Migut.N00168 Erythranthe guttata HOM05D004938 ORTHO05D006035 5.1e-44 182.6 138 62.3
MELO3C014494.2 Cucumis melo HOM05D004938 ORTHO05D006035 6.6e-44 182.2 137 63.5
CAN.G69.12 Capsicum annuum HOM05D004938 ORTHO05D006035 8.7e-44 181.8 137 62.0
COL.COLO4_05833 Corchorus olitorius HOM05D004938 ORTHO05D006035 8.7e-44 181.8 138 63.0
Gohir.A09G055200 Gossypium hirsutum HOM05D004938 ORTHO05D006035 8.7e-44 181.8 138 64.5
Sabra08G0113800 Salix brachista HOM05D004938 ORTHO05D006035 8.7e-44 181.8 137 65.7
Lsat_1_v5_gn_9_79740 Lactuca sativa HOM05D004938 ORTHO05D006035 1.1e-43 181.4 139 61.2
Nitab4.5_0000180g0010 Nicotiana tabacum HOM05D004938 ORTHO05D006035 1.1e-43 181.4 138 60.9
Sopen01g031490 Solanum pennellii HOM05D004938 ORTHO05D006035 1.1e-43 181.4 137 62.8
PGSC0003DMG400008998 Solanum tuberosum HOM05D004938 ORTHO05D006035 1.1e-43 181.4 137 62.8
CsaV3_6G038300 Cucumis sativus L. HOM05D004938 ORTHO05D006035 1.5e-43 181.0 137 62.8
Gohir.D09G054100 Gossypium hirsutum HOM05D004938 ORTHO05D006035 1.5e-43 181.0 138 63.0
Gorai.006G053000 Gossypium raimondii HOM05D004938 ORTHO05D006035 1.9e-43 180.6 138 63.0
Cc03_g03380 Coffea canephora HOM05D004938 ORTHO05D006035 2.5e-43 180.3 138 61.6
MBI17_g12492_MAGBIO Magnolia biondii HOM05D004938 ORTHO05D006035 3.3e-43 179.9 136 61.8
Manes.15G025800 Manihot esculenta HOM05D004938 ORTHO05D006035 4.3e-43 179.5 133 66.9
SGA_v2.0_scaffold10G05111 Striga asiatica HOM05D004938 ORTHO05D006035 4.3e-43 179.5 144 60.4
Nn4g26248 Nelumbo nucifera HOM05D004938 ORTHO05D006035 5.6e-43 179.1 138 63.0
DCAR_030617 Daucus carota HOM05D004938 ORTHO05D006035 7.3e-43 178.7 137 64.2
Sc19g0004370 Simmondsia chinensis HOM05D004938 ORTHO05D006035 7.3e-43 178.7 139 62.6
Eucgr.H03562 Eucalyptus grandis HOM05D004938 ORTHO05D006035 9.6e-43 178.3 336 35.7
PSO170G2096 Papaver somniferum HOM05D004938 ORTHO05D006035 9.6e-43 178.3 138 62.3
PSO302G0105 Papaver somniferum HOM05D004938 ORTHO05D006035 9.6e-43 178.3 138 62.3
Rhsim04G0204400 Rhododendron simsii HOM05D004938 ORTHO05D006035 1.3e-42 177.9 138 61.6
Actinidia23495 Actinidia chinensis HOM05D004938 ORTHO05D006035 2.1e-42 177.2 138 60.1
Sc13g0004170 Simmondsia chinensis HOM05D004938 ORTHO05D006035 3.6e-42 176.4 133 63.2
TWI09G0224 Tripterygium wilfordii HOM05D004938 ORTHO05D006035 3.6e-42 176.4 138 62.3
Nitab4.5_0000144g0140 Nicotiana tabacum HOM05D004938 ORTHO05D006035 4.8e-42 176.0 138 59.4
CANSAT78G1749 Cannabis sativa HOM05D004938 ORTHO05D006035 1.1e-41 174.9 138 59.4
TWI73G0197 Tripterygium wilfordii HOM05D004938 ORTHO05D006035 1.1e-41 174.9 131 64.9
Gohir.D02G037500 Gossypium hirsutum HOM05D004938 ORTHO05D006035 1.8e-41 174.1 138 63.0
Gorai.005G041400 Gossypium raimondii HOM05D004938 ORTHO05D006035 1.8e-41 174.1 138 63.0
Sabra10G0051800 Salix brachista HOM05D004938 ORTHO05D006035 2.4e-41 173.7 138 63.0
SalBow5G1669 Salvia bowleyana HOM05D004938 ORTHO05D006035 2.4e-41 173.7 138 59.4
SalBow5G2418 Salvia bowleyana HOM05D004938 ORTHO05D006035 2.4e-41 173.7 138 59.4
Lj6C597G4 Lonicera japonica HOM05D000104 ORTHO05D006391 3.1e-41 173.3 138 59.4
HanXRQChr13g0400271 Helianthus annuus HOM05D004938 ORTHO05D006035 5.3e-41 172.6 133 60.9
Gohir.A02G029700 Gossypium hirsutum HOM05D004938 ORTHO05D006035 6.9e-41 172.2 138 62.3
THA.LOC104822301 Tarenaya hassleriana HOM05D004938 ORTHO05D006035 9.0e-41 171.8 133 59.4
Sed0014933 Sechium edule HOM05D004938 ORTHO05D006035 1.2e-40 171.4 129 61.2
Potri.008G149700 Populus trichocarpa HOM05D004938 ORTHO05D006035 4.5e-40 169.5 138 63.0
Potri.010G091500 Populus trichocarpa HOM05D004938 ORTHO05D006035 7.6e-40 168.7 132 65.2
Ah.13g073990 Amaranthus hybridus HOM05D004938 ORTHO05D006035 1.3e-39 167.9 132 60.6
CSS0022730 Camellia sinensis var. sinensis HOM05D000104 ORTHO05D006391 1.7e-39 167.5 138 58.0
THA.LOC104818812 Tarenaya hassleriana HOM05D004938 ORTHO05D006035 1.7e-39 167.5 133 59.4
EL10As3g23318 Beta vulgaris HOM05D004938 ORTHO05D006035 8.4e-39 165.2 138 55.8
CDE10G1250 Ceratophyllum demersum HOM05D004938 ORTHO05D006035 1.1e-38 164.9 139 58.3
CSS0042089 Camellia sinensis var. sinensis HOM05D004938 ORTHO05D006035 1.4e-38 164.5 138 58.7
CSS0044999 Camellia sinensis var. sinensis HOM05D000104 ORTHO05D006391 1.4e-38 164.5 138 58.7
Sed0021968 Sechium edule HOM05D004938 ORTHO05D006035 1.9e-38 164.1 137 57.7
AL6G30760 Arabidopsis lyrata HOM05D004938 ORTHO05D006035 4.2e-38 162.9 138 56.5
AUR62038174 Chenopodium quinoa HOM05D004938 ORTHO05D006035 1.6e-37 161.0 138 55.8
AUR62043416 Chenopodium quinoa HOM05D004938 ORTHO05D006035 1.6e-37 161.0 138 55.8
Hund12168 Selenicereus undatus HOM05D004938 ORTHO05D006035 1.6e-37 161.0 129 58.1
HPP92_016866 Vanilla planifolia HOM05D004938 ORTHO05D006035 3.5e-37 159.8 138 57.2
AT5G19280 Arabidopsis thaliana HOM05D004938 ORTHO05D006035 4.6e-37 159.5 138 55.8
CARHR193690 Cardamine hirsuta HOM05D004938 ORTHO05D006035 4.6e-37 159.5 137 55.5
Dinv38414 Davidia involucrata HOM05D004938 ORTHO05D006035 4.6e-37 159.5 115 64.3
ATR0626G035 Amborella trichopoda HOM05D004938 ORTHO05D006035 6.0e-37 159.1 138 55.8
Carub.0006s1761 Capsella rubella HOM05D004938 ORTHO05D006035 1.8e-36 157.5 138 53.6
Zm00001eb303240 Zea mays HOM05D004938 ORTHO05D006035 2.3e-36 157.1 132 56.1
Sp6g25140 Schrenkiella parvula HOM05D004938 ORTHO05D006035 3.0e-36 156.8 138 55.1
Thhalv10013082m.g Eutrema salsugineum HOM05D004938 ORTHO05D006035 3.9e-36 156.4 138 54.3
Zm00001eb095260 Zea mays HOM05D004938 ORTHO05D006035 1.1e-35 154.8 132 55.3
Aa31LG11G10410 Aethionema arabicum HOM05D004938 ORTHO05D006035 1.5e-35 154.5 330 31.8
BcaC04g18583 Brassica carinata HOM05D004938 ORTHO05D006035 1.9e-35 154.1 138 55.8
C09p57000 Brassica napus HOM05D004938 ORTHO05D006035 1.9e-35 154.1 138 55.8
BraA02t05496Z Brassica rapa HOM05D004938 ORTHO05D006035 4.3e-35 152.9 147 51.7
BolC9t58564H Brassica oleracea HOM05D004938 ORTHO05D006035 7.4e-35 152.1 138 55.1
A10p20400 Brassica napus HOM05D004938 ORTHO05D006035 9.6e-35 151.8 138 55.1
BraA10t44110Z Brassica rapa HOM05D004938 ORTHO05D006035 9.6e-35 151.8 138 55.1
BolC2t06952H Brassica oleracea HOM05D004938 ORTHO05D006035 1.3e-34 151.4 137 53.3
Ah.04g154350 Amaranthus hybridus HOM05D004938 ORTHO05D006035 1.6e-34 151.0 131 52.7
BcaC03g13661 Brassica carinata HOM05D004938 ORTHO05D006035 2.1e-34 150.6 137 54.0
BNapus_Darmor_BZH_scaffold_38p02660 Brassica napus HOM05D004938 ORTHO05D006035 2.8e-34 150.2 137 54.0
Os07g0211400 Oryza sativa ssp. japonica HOM05D004938 ORTHO05D006035 2.8e-34 150.2 143 49.7
A02p05430 Brassica napus HOM05D004938 ORTHO05D006035 4.8e-34 149.4 137 52.6
Lj3A741G39 Lonicera japonica HOM05D004938 ORTHO05D006035 5.3e-33 146.0 137 54.0
BcaC04g18584 Brassica carinata HOM05D004938 ORTHO05D006035 9.0e-33 145.2 144 50.0
Os03g0809700 Oryza sativa ssp. japonica HOM05D004938 ORTHO05D006035 2.0e-32 144.1 135 52.6
HPP92_016923 Vanilla planifolia HOM05D004938 ORTHO05D006035 3.4e-32 143.3 125 57.6
BcaB08g36589 Brassica carinata HOM05D004938 ORTHO05D006035 9.9e-32 141.7 138 52.2
AagrBONN_evm.TU.Sc2ySwM_368.1070 Anthoceros agrestis HOM05D004938 ORTHO05D006035 5.6e-27 125.9 140 45.0
SMO119G0313 Selaginella moellendorffii HOM05D004938 ORTHO05D006035 4.5e-24 116.3 138 46.4
Sed0019086 Sechium edule HOM05D004938 ORTHO05D006035 7.6e-24 115.5 132 43.9
Mapoly0156s0019 Marchantia polymorpha HOM05D004938 ORTHO05D006035 2.2e-23 114.0 142 45.1
Pp3c22_2480 Physcomitrium patens HOM05D004938 ORTHO05D006035 1.1e-22 111.7 131 46.6
CBR_g40443 Chara braunii HOM05D000019 ORTHO05D000002 7.9e-21 105.5 127 43.3
A03p35320 Brassica napus HOM05D004938 ORTHO05D006035 1.8e-20 104.4 86 60.5
Pp3c19_3420 Physcomitrium patens HOM05D004938 ORTHO05D006035 2.3e-20 104.0 123 46.3
HPP92_016876 Vanilla planifolia HOM05D004938 ORTHO05D006035 9.3e-14 82.0 119 39.5
Actinidia40164 Actinidia chinensis HOM05D004938 ORTHO05D006035 2.6e-08 63.9 37 70.3
TAR362G0044 Trochodendron aralioides HOM05D004938 ORTHO05D006035 1.3e-07 61.6 37 78.4
A02p05380 Brassica napus HOM05D004938 ORTHO05D006035 8.5e-07 58.9 48 54.2
C05p51710 Brassica napus HOM05D000250 ORTHO05D002477 5.5e-06 56.2 34 64.7


User provided reference genes

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