Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.R3ADAS Arachis hypogaea HOM05D005190 ORTHO05D006183 3.0e-75 285.0 139 100.0
arahy.Tifrunner.gnm1.ann1.W6NXGM Arachis hypogaea HOM05D005190 ORTHO05D006183 3.5e-71 271.6 133 99.2
arahy.Tifrunner.gnm1.ann1.JER3JH Arachis hypogaea HOM05D005190 ORTHO05D006183 3.2e-69 265.0 133 95.5
arahy.Tifrunner.gnm1.ann1.CG6LTA Arachis hypogaea HOM05D005190 ORTHO05D006183 2.7e-68 261.9 133 94.0
Psat0ss1196g0480 Pisum sativum HOM05D005190 ORTHO05D006183 2.9e-62 241.9 137 83.9
TPR.G22255 Trifolium pratense HOM05D005190 ORTHO05D006183 1.9e-61 239.2 133 85.7
TPR.G12566 Trifolium pratense HOM05D005190 ORTHO05D006183 2.5e-61 238.8 132 86.4
Ca_02362_v3 Cicer arietinum L. HOM05D005190 ORTHO05D006183 2.1e-60 235.7 133 85.0
Glyma.02G064900 Glycine max HOM05D005190 ORTHO05D006183 3.6e-60 235.0 132 87.9
Glyma.16G146000 Glycine max HOM05D005190 ORTHO05D006183 6.1e-60 234.2 128 88.3
Lj4g0016109 Lotus japonicus HOM05D005190 ORTHO05D006183 8.0e-60 233.8 132 84.8
Lalb_Chr13g0298851 Lupinus albus HOM05D005190 ORTHO05D006183 1.4e-59 233.0 131 82.4
Medtr7g096570 Medicago truncatula HOM05D005190 ORTHO05D006183 2.3e-59 232.3 132 82.6
Phvul.004G071200 Phaseolus vulgaris HOM05D005190 ORTHO05D006183 4.0e-59 231.5 128 87.5
Dinv09552 Davidia involucrata HOM05D005190 ORTHO05D006183 1.2e-58 229.9 132 85.6
Dinv10386 Davidia involucrata HOM05D005190 ORTHO05D006183 1.2e-58 229.9 132 85.6
CsaV3_4G025830 Cucumis sativus L. HOM05D005190 ORTHO05D006183 2.0e-58 229.2 131 80.9
Lalb_Chr07g0181821 Lupinus albus HOM05D005190 ORTHO05D006183 2.6e-58 228.8 131 83.2
Phvul.004G071300 Phaseolus vulgaris HOM05D005190 ORTHO05D006183 7.5e-58 227.3 128 85.9
MELO3C006747.2 Cucumis melo HOM05D005190 ORTHO05D006183 1.3e-57 226.5 132 79.5
Sed0026997 Sechium edule HOM05D005190 ORTHO05D006183 1.7e-57 226.1 131 84.0
CSS0027522 Camellia sinensis var. sinensis HOM05D005190 ORTHO05D006183 2.8e-57 225.3 131 79.4
CSS0047604 Camellia sinensis var. sinensis HOM05D005190 ORTHO05D006183 2.8e-57 225.3 131 79.4
ClCG04G007440 Citrullus lanatus HOM05D005190 ORTHO05D006183 2.8e-57 225.3 132 80.3
Actinidia01056 Actinidia chinensis HOM05D005190 ORTHO05D006183 2.4e-56 222.2 131 80.9
CsaV3_3G015480 Cucumis sativus L. HOM05D005190 ORTHO05D006183 4.1e-56 221.5 131 77.9
Manes.17G016100 Manihot esculenta HOM05D005190 ORTHO05D006183 7.0e-56 220.7 131 82.4
TAR629G3462 Trochodendron aralioides HOM05D005190 ORTHO05D006183 9.1e-56 220.3 131 77.9
GSVIVG01017663001 Vitis vinifera HOM05D005190 ORTHO05D006183 2.0e-55 219.2 132 81.1
Nn3g18945 Nelumbo nucifera HOM05D005190 ORTHO05D006183 2.7e-55 218.8 132 77.3
GSVIVG01017602001 Vitis vinifera HOM05D005190 ORTHO05D006183 4.5e-55 218.0 132 81.1
MD13G1144000 Malus domestica HOM05D005190 ORTHO05D006183 1.0e-54 216.9 131 80.2
ATR0730G183 Amborella trichopoda HOM05D005190 ORTHO05D006183 1.3e-54 216.5 133 77.4
Prupe.8G102200 Prunus persica HOM05D005190 ORTHO05D006183 2.9e-54 215.3 131 78.6
Hma1.2p1_0013F.1_g007820 Hydrangea macrophylla HOM05D005190 ORTHO05D006183 3.8e-54 214.9 133 76.7
CANSAT35G0272 Cannabis sativa HOM05D005190 ORTHO05D006183 6.6e-54 214.2 131 80.2
RcHm_v2.0_Chr4g0426821 Rosa chinensis HOM05D005190 ORTHO05D006183 1.1e-53 213.4 131 79.4
Gohir.A06G195300 Gossypium hirsutum HOM05D005190 ORTHO05D006183 1.5e-53 213.0 131 75.6
FAN07G0799 Fragaria x ananassa HOM05D005190 ORTHO05D006183 2.5e-53 212.2 131 78.6
FAN17G1108 Fragaria x ananassa HOM05D000385 ORTHO05D006183 2.5e-53 212.2 131 78.6
TWI38G0007 Tripterygium wilfordii HOM05D005190 ORTHO05D006183 2.5e-53 212.2 131 79.4
TAR636G2254 Trochodendron aralioides HOM05D005190 ORTHO05D006183 2.5e-53 212.2 131 82.4
Potri.015G036700 Populus trichocarpa HOM05D005190 ORTHO05D006183 3.3e-53 211.8 131 79.4
Gohir.D06G202900 Gossypium hirsutum HOM05D005190 ORTHO05D006183 4.3e-53 211.5 131 74.8
Gorai.010G236800 Gossypium raimondii HOM05D005190 ORTHO05D006183 4.3e-53 211.5 131 74.8
CiPaw.01G130900 Carya illinoinensis HOM05D005190 ORTHO05D006183 9.5e-53 210.3 133 79.7
MBI19_g06603_MAGBIO Magnolia biondii HOM05D005190 ORTHO05D006183 9.5e-53 210.3 134 74.6
PGR044G0309 Punica granatum HOM05D005190 ORTHO05D006183 9.5e-53 210.3 131 74.8
Duzib235G0490 Durio zibethinus HOM05D005190 ORTHO05D006183 1.2e-52 209.9 131 77.1
Sc06g0001490 Simmondsia chinensis HOM05D005190 ORTHO05D006183 1.2e-52 209.9 133 78.2
Duzib192G0082 Durio zibethinus HOM05D005190 ORTHO05D006183 2.1e-52 209.1 131 76.3
FvH4_4g21210 Fragaria vesca HOM05D005190 ORTHO05D006183 2.8e-52 208.8 131 77.1
FAN12G1005 Fragaria x ananassa HOM05D005190 ORTHO05D006183 2.8e-52 208.8 131 77.1
Sabra15G0031200 Salix brachista HOM05D005190 ORTHO05D006183 2.8e-52 208.8 131 77.9
Thecc.06G136600 Theobroma cacao HOM05D005190 ORTHO05D006183 4.7e-52 208.0 131 78.6
Cpa.g.sc146.40 Carica papaya HOM05D005190 ORTHO05D006183 6.1e-52 207.6 125 77.6
Cfa006455 Carpinus fangiana HOM05D005190 ORTHO05D006183 1.0e-51 206.8 133 77.4
Ciclev10006189m.g Citrus clementina HOM05D005190 ORTHO05D006183 1.4e-51 206.5 131 74.0
Rhsim04G0247000 Rhododendron simsii HOM05D005190 ORTHO05D006183 1.8e-51 206.1 131 74.8
Potri.012G045500 Populus trichocarpa HOM05D005190 ORTHO05D006183 2.3e-51 205.7 131 77.1
THA.LOC104800562 Tarenaya hassleriana HOM05D005190 ORTHO05D006183 2.3e-51 205.7 124 75.8
TWI63G0483 Tripterygium wilfordii HOM05D005190 ORTHO05D006183 4.0e-51 204.9 131 74.0
QL06p013825 Quercus lobata HOM05D005190 ORTHO05D006183 8.9e-51 203.8 132 75.8
Haze_00795 Corylus avellana HOM05D005582 ORTHO05D007028 1.2e-50 203.4 133 76.7
Cc07_g19070 Coffea canephora HOM05D005190 ORTHO05D006183 2.6e-50 202.2 131 74.0
Oeu009981.1 Olea europaea HOM05D005190 ORTHO05D006183 2.6e-50 202.2 131 75.6
Sabra12G0031600 Salix brachista HOM05D005190 ORTHO05D006183 2.6e-50 202.2 131 75.6
HanXRQChr06g0166421 Helianthus annuus HOM05D005190 ORTHO05D006183 3.4e-50 201.8 131 72.5
SGA_v2.0_scaffold36G14289 Striga asiatica HOM05D005190 ORTHO05D006183 4.4e-50 201.4 131 75.6
MSTRG.12184 Avicennia marina HOM05D005190 ORTHO05D006183 7.5e-50 200.7 131 76.3
DCAR_006510 Daucus carota HOM05D005190 ORTHO05D006183 9.8e-50 200.3 131 72.5
PGSC0003DMG400012133 Solanum tuberosum HOM05D005190 ORTHO05D006183 2.2e-49 199.1 131 73.3
HanXRQChr17g0534691 Helianthus annuus HOM05D005190 ORTHO05D006183 3.7e-49 198.4 131 71.8
SEGI_18361 Sequoiadendron giganteum HOM05D005190 ORTHO05D006183 3.7e-49 198.4 130 75.4
Peaxi162Scf00074g00538 Petunia axillaris HOM05D005190 ORTHO05D006183 6.4e-49 197.6 131 71.8
COL.COLO4_30940 Corchorus olitorius HOM05D005190 ORTHO05D006183 2.4e-48 195.7 141 71.6
AUR62002533 Chenopodium quinoa HOM05D005190 ORTHO05D006183 5.4e-48 194.5 133 71.4
EL10Ac3g06230 Beta vulgaris HOM05D005190 ORTHO05D006183 7.0e-48 194.1 133 70.7
Solyc08g082740.4 Solanum lycopersicum HOM05D005190 ORTHO05D006183 7.0e-48 194.1 132 71.2
Sopen08g030970 Solanum pennellii HOM05D005190 ORTHO05D006183 7.0e-48 194.1 132 71.2
AUR62023660 Chenopodium quinoa HOM05D005190 ORTHO05D006183 1.6e-47 193.0 133 70.7
Lsat_1_v5_gn_3_12780 Lactuca sativa HOM05D005190 ORTHO05D006183 3.5e-47 191.8 131 72.5
HPP92_019515 Vanilla planifolia HOM05D005190 ORTHO05D006183 3.5e-47 191.8 127 70.1
Nitab4.5_0002793g0070 Nicotiana tabacum HOM05D005190 ORTHO05D006183 4.6e-47 191.4 132 69.7
TPR.G39662 Trifolium pratense HOM05D005190 ORTHO05D006183 4.6e-47 191.4 113 84.1
ECA246G1588 Erigeron canadensis HOM05D005190 ORTHO05D006183 1.0e-46 190.3 131 71.0
Nitab4.5_0002367g0140 Nicotiana tabacum HOM05D005190 ORTHO05D006183 1.0e-46 190.3 132 69.7
Pp3c3_17800 Physcomitrium patens HOM05D005190 ORTHO05D006183 2.3e-46 189.1 136 68.4
CAN.G567.34 Capsicum annuum HOM05D005190 ORTHO05D006183 3.9e-46 188.3 132 69.7
SalBow4G3050 Salvia bowleyana HOM05D005190 ORTHO05D006183 3.9e-46 188.3 131 67.2
BcaC05g27594 Brassica carinata HOM05D005190 ORTHO05D006183 5.0e-46 188.0 139 66.2
A05p21200 Brassica napus HOM05D005190 ORTHO05D006183 5.0e-46 188.0 139 66.2
C05p35790 Brassica napus HOM05D005190 ORTHO05D006183 5.0e-46 188.0 139 66.2
BraA05t21026Z Brassica rapa HOM05D005190 ORTHO05D006183 5.0e-46 188.0 139 66.2
SGA_v2.0_scaffold198G41066 Striga asiatica HOM05D005190 ORTHO05D006183 5.0e-46 188.0 132 68.2
Migut.N00575 Erythranthe guttata HOM05D005190 ORTHO05D006183 8.6e-46 187.2 115 73.9
Lsat_1_v5_gn_6_83381 Lactuca sativa HOM05D005190 ORTHO05D006183 1.5e-45 186.4 119 70.6
Os06g0342100 Oryza sativa ssp. japonica HOM05D005190 ORTHO05D006183 2.1e-44 182.6 125 67.2
BcaB04g17462 Brassica carinata HOM05D005190 ORTHO05D006183 8.0e-44 180.6 115 71.3
Aa31LG10G5580 Aethionema arabicum HOM05D005190 ORTHO05D006183 1.0e-43 180.3 114 71.1
Thhalv10011800m.g Eutrema salsugineum HOM05D005190 ORTHO05D006183 1.0e-43 180.3 114 72.8
PSO782G1806 Papaver somniferum HOM05D005190 ORTHO05D006183 1.4e-43 179.9 120 68.3
Zm00001eb066670 Zea mays HOM05D005190 ORTHO05D006183 1.4e-43 179.9 124 66.1
Zm00001eb081370 Zea mays HOM05D005190 ORTHO05D006183 1.4e-43 179.9 124 66.1
Sp1g35120 Schrenkiella parvula HOM05D005190 ORTHO05D006183 2.3e-43 179.1 109 75.2
AT1G48160 Arabidopsis thaliana HOM05D005190 ORTHO05D006183 5.2e-43 177.9 115 70.4
PSO478G2609 Papaver somniferum HOM05D005190 ORTHO05D006183 5.2e-43 177.9 118 68.6
AL8G32340 Arabidopsis lyrata HOM05D005190 ORTHO05D006183 8.9e-43 177.2 115 69.6
Carub.0001s3725 Capsella rubella HOM05D005190 ORTHO05D006183 8.9e-43 177.2 114 71.1
arahy.Tifrunner.gnm1.ann1.AFL9DX Arachis hypogaea HOM05D005190 ORTHO05D006183 1.2e-42 176.8 111 81.1
BcaC07g37169 Brassica carinata HOM05D005190 ORTHO05D006183 1.5e-42 176.4 108 74.1
C08p05420 Brassica napus HOM05D005190 ORTHO05D006183 1.5e-42 176.4 108 74.1
BolC8t47359H Brassica oleracea HOM05D005190 ORTHO05D006183 1.5e-42 176.4 108 74.1
AL1G54730 Arabidopsis lyrata HOM05D005190 ORTHO05D006183 2.6e-42 175.6 114 69.3
CARHR037790 Cardamine hirsuta HOM05D005190 ORTHO05D006183 3.4e-42 175.3 108 75.9
A08p05180 Brassica napus HOM05D005190 ORTHO05D006183 4.4e-42 174.9 108 73.1
BraA08t32536Z Brassica rapa HOM05D005190 ORTHO05D006183 4.4e-42 174.9 108 73.1
Mapoly0004s0269 Marchantia polymorpha HOM05D005190 ORTHO05D006183 4.4e-42 174.9 135 65.9
BolC5t32295H Brassica oleracea HOM05D005190 ORTHO05D006183 7.5e-42 174.1 132 62.9
MD13G1143900 Malus domestica HOM05D005190 ORTHO05D006183 3.7e-41 171.8 107 78.5
TPR.G16114 Trifolium pratense HOM05D005190 ORTHO05D006183 3.7e-41 171.8 100 77.0
Ah.07g203500 Amaranthus hybridus HOM05D005190 ORTHO05D006183 6.6e-38 161.0 93 74.2
AagrBONN_evm.TU.Sc2ySwM_362.2360 Anthoceros agrestis HOM05D005190 ORTHO05D006183 5.6e-37 157.9 122 62.3
unitig_747.g21355 Utricularia gibba HOM05D001490 ORTHO05D001450 3.2e-32 142.1 131 58.0
BcaC08g43007 Brassica carinata HOM05D005190 ORTHO05D006183 5.4e-32 141.4 86 73.3
CBR_g39024 Chara braunii HOM05D005190 ORTHO05D006183 3.9e-30 135.2 127 55.1
SMO352G0034 Selaginella moellendorffii HOM05D005190 ORTHO05D006183 5.6e-29 131.3 122 55.7
C06p02560 Brassica napus HOM05D005190 ORTHO05D006183 1.1e-27 127.1 112 56.2
ClCG05G006830 Citrullus lanatus HOM05D005190 ORTHO05D006183 4.0e-27 125.2 60 88.3
MBI07_g26367_MAGBIO Magnolia biondii HOM05D005190 ORTHO05D006183 5.2e-27 124.8 126 49.2
Eucgr.G02037 Eucalyptus grandis HOM05D005190 ORTHO05D006183 4.4e-26 121.7 72 70.8
Dinv29526 Davidia involucrata HOM05D005190 ORTHO05D006183 7.6e-26 120.9 71 85.9
BcaC01g01495 Brassica carinata HOM05D005190 ORTHO05D006183 3.5e-23 112.1 129 49.6
Actinidia18502 Actinidia chinensis HOM05D006846 ORTHO05D008473 2.3e-22 109.4 89 66.3
vmacro08000 Vaccinium macrocarpon HOM05D005190 ORTHO05D006183 2.5e-21 105.9 74 71.6
CDE05G0439 Ceratophyllum demersum HOM05D005190 ORTHO05D006183 5.6e-21 104.8 75 66.7
Cre02.g095070 Chlamydomonas reinhardtii HOM05D005190 ORTHO05D006183 8.1e-20 100.9 119 44.5
MCO01G268 Micromonas commoda HOM05D005190 ORTHO05D006183 8.1e-20 100.9 102 49.0
Aqoxy2G01813 Aquilegia oxysepala HOM05D005190 ORTHO05D006183 1.4e-19 100.1 78 66.7
Haze_12814 Corylus avellana HOM05D000165 ORTHO05D001328 1.4e-19 100.1 70 65.7
BolC6t35384H Brassica oleracea HOM05D005190 ORTHO05D006183 1.5e-18 96.7 59 69.5
RcHm_v2.0_Chr7g0219311 Rosa chinensis HOM05D005190 ORTHO05D006183 1.2e-15 87.0 59 67.8
Atru.chr4.92 Acer truncatum HOM05D005190 ORTHO05D006183 2.7e-15 85.9 56 71.4
Cfa023211 Carpinus fangiana HOM05D005190 ORTHO05D006183 8.7e-14 80.9 105 41.9
EL10As1g23068 Beta vulgaris HOM05D005190 ORTHO05D006183 1.9e-13 79.7 78 52.6
PRCOL_00001126 Prasinoderma coloniale HOM05D005190 ORTHO05D006183 3.6e-12 75.5 127 39.4
MD13G1001700 Malus domestica HOM05D005190 ORTHO05D006183 6.4e-09 64.7 81 44.4
MELO3C033488.2 Cucumis melo HOM05D005190 ORTHO05D006183 1.9e-08 63.2 68 54.4


User provided reference genes

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