Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.R367CR Arachis hypogaea HOM05D005013 ORTHO05D006005 6.7e-301 1036.9 682 100.0
arahy.Tifrunner.gnm1.ann1.1M6YYJ Arachis hypogaea HOM05D005013 ORTHO05D006005 1.2e-289 999.6 682 97.4
Lalb_Chr22g0351551 Lupinus albus HOM05D005013 ORTHO05D006005 1.1e-221 773.9 705 76.6
Phvul.010G145300 Phaseolus vulgaris HOM05D005013 ORTHO05D006005 3.1e-221 772.3 699 78.0
Glyma.07G015500 Glycine max HOM05D005013 ORTHO05D006005 4.0e-221 771.9 698 75.4
VMungo0331G0134 Vigna mungo HOM05D005013 ORTHO05D006005 1.7e-219 766.5 699 77.1
Glyma.08G201000 Glycine max HOM05D005013 ORTHO05D006005 2.2e-219 766.1 703 74.4
Lj3g0013010 Lotus japonicus HOM05D005013 ORTHO05D006005 6.2e-214 748.0 514 81.3
Lalb_Chr04g0262971 Lupinus albus HOM05D005013 ORTHO05D006005 1.2e-209 733.8 530 77.4
Psat2g107800 Pisum sativum HOM05D005013 ORTHO05D006005 3.4e-204 715.7 523 76.3
TPR.G26938 Trifolium pratense HOM05D005013 ORTHO05D006005 3.2e-202 709.1 446 81.8
Prupe.1G178600 Prunus persica HOM05D005013 ORTHO05D006005 3.0e-200 702.6 508 76.6
Prupe.3G059100 Prunus persica HOM05D005013 ORTHO05D006005 6.6e-200 701.4 508 76.0
Medtr8g014460 Medicago truncatula HOM05D005013 ORTHO05D006005 3.3e-199 699.1 446 81.2
RcHm_v2.0_Chr2g0140531 Rosa chinensis HOM05D005013 ORTHO05D006005 4.8e-198 695.3 524 74.2
arahy.Tifrunner.gnm1.ann1.VUMD9N Arachis hypogaea HOM05D005013 ORTHO05D006005 5.8e-196 688.3 761 66.2
MD09G1202900 Malus domestica HOM05D005013 ORTHO05D006005 4.9e-195 685.3 534 72.7
MELO3C024438.2 Cucumis melo HOM05D005013 ORTHO05D006005 8.4e-195 684.5 521 69.3
MD17G1184000 Malus domestica HOM05D005013 ORTHO05D006005 2.4e-194 682.9 529 72.6
FvH4_6g32381 Fragaria vesca HOM05D005013 ORTHO05D006005 4.2e-194 682.2 524 73.9
FAN14G4508 Fragaria x ananassa HOM05D005013 ORTHO05D006005 3.5e-193 679.1 524 73.5
FAN09G0199 Fragaria x ananassa HOM05D005013 ORTHO05D006005 3.0e-192 676.0 524 73.1
Duzib235G0505 Durio zibethinus HOM05D005013 ORTHO05D006005 3.9e-192 675.6 518 71.6
Gohir.D09G081300 Gossypium hirsutum HOM05D005013 ORTHO05D006005 8.7e-192 674.5 518 73.0
QL05p020046 Quercus lobata HOM05D005013 ORTHO05D006005 8.7e-192 674.5 533 70.7
Gorai.006G096900 Gossypium raimondii HOM05D005013 ORTHO05D006005 1.1e-191 674.1 518 72.8
ClCG09G000200 Citrullus lanatus HOM05D005013 ORTHO05D006005 1.5e-191 673.7 723 67.9
CANSAT56G0983 Cannabis sativa HOM05D005013 ORTHO05D006005 1.9e-191 673.3 528 67.6
FAN02G3590 Fragaria x ananassa HOM05D005013 ORTHO05D006005 1.9e-191 673.3 524 73.1
FAN05G1466 Fragaria x ananassa HOM05D005013 ORTHO05D006005 2.5e-191 672.9 524 73.1
Thecc.06G100000 Theobroma cacao HOM05D005013 ORTHO05D006005 4.3e-191 672.2 518 73.7
Gohir.A09G081200 Gossypium hirsutum HOM05D005013 ORTHO05D006005 5.6e-191 671.8 518 72.8
Duzib192G0488 Durio zibethinus HOM05D005013 ORTHO05D006005 2.1e-190 669.8 519 72.6
Sed0027607 Sechium edule HOM05D005013 ORTHO05D006005 3.7e-190 669.1 528 67.2
Ca_23271_v3 Cicer arietinum L. HOM05D005013 ORTHO05D006005 4.8e-190 668.7 446 79.4
Ca_23262_v3 Cicer arietinum L. HOM05D005013 ORTHO05D006005 6.2e-190 668.3 402 84.1
CsaV3_7G035280 Cucumis sativus L. HOM05D005013 ORTHO05D006005 6.2e-190 668.3 490 70.4
COL.COLO4_30512 Corchorus olitorius HOM05D005013 ORTHO05D006005 1.4e-189 667.2 523 71.9
CiPaw.02G145800 Carya illinoinensis HOM05D005013 ORTHO05D006005 3.1e-189 666.0 531 71.0
Ciclev10025066m.g Citrus clementina HOM05D005013 ORTHO05D006005 5.5e-186 655.2 521 69.7
TAR633G2449 Trochodendron aralioides HOM05D005013 ORTHO05D006005 7.1e-186 654.8 531 69.5
PGR102G0015 Punica granatum HOM05D005013 ORTHO05D006005 4.6e-185 652.1 530 69.1
vmacro18853 Vaccinium macrocarpon HOM05D005013 ORTHO05D006005 7.9e-185 651.4 517 70.8
Gorai.003G061700 Gossypium raimondii HOM05D005013 ORTHO05D006005 1.3e-184 650.6 527 69.6
CSS0033602 Camellia sinensis var. sinensis HOM05D005013 ORTHO05D006005 1.3e-182 644.0 533 68.5
Gohir.A02G117400 Gossypium hirsutum HOM05D005013 ORTHO05D006005 6.2e-182 641.7 527 67.4
Hma1.2p1_1232F.1_g268910 Hydrangea macrophylla HOM05D005013 ORTHO05D006005 3.1e-181 639.4 519 71.3
Sabra01G0151600 Salix brachista HOM05D005013 ORTHO05D006005 1.2e-180 637.5 522 67.4
Haze_15847 Corylus avellana HOM05D005013 ORTHO05D006005 1.5e-180 637.1 534 68.9
Potri.001G190000 Populus trichocarpa HOM05D005013 ORTHO05D006005 1.5e-180 637.1 522 66.3
Solyc03g121020.3 Solanum lycopersicum HOM05D005013 ORTHO05D006005 1.5e-180 637.1 520 66.7
Sopen03g039850 Solanum pennellii HOM05D005013 ORTHO05D006005 3.4e-180 636.0 528 66.1
Gohir.D03G057900 Gossypium hirsutum HOM05D005013 ORTHO05D006005 2.2e-179 633.3 478 73.2
Manes.11G033651 Manihot esculenta HOM05D005013 ORTHO05D006005 4.9e-179 632.1 510 70.2
CAN.G1143.13 Capsicum annuum HOM05D005013 ORTHO05D006005 1.4e-178 630.6 531 67.0
Manes.04G134200 Manihot esculenta HOM05D005013 ORTHO05D006005 5.5e-178 628.6 512 65.8
GSVIVG01016983001 Vitis vinifera HOM05D005013 ORTHO05D006005 7.9e-177 624.8 419 74.2
Peaxi162Scf00038g01028 Petunia axillaris HOM05D005013 ORTHO05D006005 1.8e-176 623.6 451 71.8
Cc04_g02560 Coffea canephora HOM05D005013 ORTHO05D006005 2.3e-176 623.2 527 67.0
Eucgr.F03078 Eucalyptus grandis HOM05D005013 ORTHO05D006005 2.8e-174 616.3 534 67.0
Aa31LG4G90 Aethionema arabicum HOM05D005013 ORTHO05D006005 3.7e-174 615.9 531 67.6
Nitab4.5_0006467g0030 Nicotiana tabacum HOM05D005013 ORTHO05D006005 2.0e-172 610.1 546 64.8
TWI12G0488 Tripterygium wilfordii HOM05D005013 ORTHO05D006005 2.0e-172 610.1 518 64.3
Atru.chr1.3523 Acer truncatum HOM05D005013 ORTHO05D006005 7.7e-172 608.2 529 64.3
Potri.003G048900 Populus trichocarpa HOM05D005013 ORTHO05D006005 7.7e-172 608.2 519 65.9
HanXRQChr02g0032251 Helianthus annuus HOM05D005013 ORTHO05D006005 1.4e-170 604.0 532 64.5
Carub.0002s2777 Capsella rubella HOM05D005013 ORTHO05D006005 3.2e-170 602.8 481 69.9
Rhsim08G0227500 Rhododendron simsii HOM05D005013 ORTHO05D006005 4.2e-170 602.4 516 68.8
Nn2g11173 Nelumbo nucifera HOM05D005013 ORTHO05D006005 5.5e-170 602.1 532 66.9
TWI75G0851 Tripterygium wilfordii HOM05D005013 ORTHO05D006005 1.6e-169 600.5 527 64.9
Actinidia32097 Actinidia chinensis HOM05D005013 ORTHO05D006005 5.1e-168 595.5 419 74.2
THA.LOC104819998 Tarenaya hassleriana HOM05D005013 ORTHO05D006005 2.5e-167 593.2 419 70.9
Sp5g36040 Schrenkiella parvula HOM05D005013 ORTHO05D006005 1.8e-165 587.0 528 64.2
Lj9C512T10 Lonicera japonica HOM05D005013 ORTHO05D006005 9.1e-165 584.7 547 64.0
PSO513G0173 Papaver somniferum HOM05D005013 ORTHO05D006005 7.7e-164 581.6 513 64.5
Thhalv10018561m.g Eutrema salsugineum HOM05D005013 ORTHO05D006005 6.5e-163 578.6 445 67.6
DCAR_016188 Daucus carota HOM05D005013 ORTHO05D006005 1.1e-162 577.8 526 62.2
PSO339G6278 Papaver somniferum HOM05D005013 ORTHO05D006005 4.2e-162 575.9 525 61.9
AT1G79730 Arabidopsis thaliana HOM05D005013 ORTHO05D006005 1.2e-161 574.3 481 66.5
ECA247G2560 Erigeron canadensis HOM05D005013 ORTHO05D006005 1.4e-160 570.9 490 64.5
Lsat_1_v5_gn_1_36740 Lactuca sativa HOM05D005013 ORTHO05D006005 1.8e-160 570.5 453 67.8
Lsat_1_v5_gn_4_97461 Lactuca sativa HOM05D005013 ORTHO05D006005 5.1e-160 568.9 517 65.4
MBI04_g36817_MAGBIO Magnolia biondii HOM05D005013 ORTHO05D006005 6.7e-160 568.5 516 64.7
Aqoxy2G02285 Aquilegia oxysepala HOM05D005013 ORTHO05D006005 1.1e-159 567.8 512 61.5
SalBow7G4596 Salvia bowleyana HOM05D005013 ORTHO05D006005 1.5e-159 567.4 521 60.8
TAR623G0538 Trochodendron aralioides HOM05D005013 ORTHO05D006005 5.7e-159 565.5 393 73.8
Nitab4.5_0006902g0030 Nicotiana tabacum HOM05D005013 ORTHO05D006005 1.3e-158 564.3 449 67.5
Hund07600 Selenicereus undatus HOM05D005013 ORTHO05D006005 1.1e-157 561.2 489 65.0
Oeu026781.2 Olea europaea HOM05D005013 ORTHO05D006005 4.5e-156 555.8 511 58.7
MSTRG.4752 Avicennia marina HOM05D005013 ORTHO05D006005 1.3e-155 554.3 505 62.6
SGA_v2.0_scaffold4G02026 Striga asiatica HOM05D005013 ORTHO05D006005 1.3e-155 554.3 488 65.2
arahy.Tifrunner.gnm1.ann1.YYV7TY Arachis hypogaea HOM05D005013 ORTHO05D006005 8.5e-155 551.6 544 60.5
A10p33120 Brassica napus HOM05D005013 ORTHO05D006005 1.5e-154 550.8 420 66.7
BcaC06g31994 Brassica carinata HOM05D005013 ORTHO05D006005 2.1e-153 547.0 421 66.7
Duzib160G0376 Durio zibethinus HOM05D005013 ORTHO05D006005 3.9e-152 542.7 425 67.8
EL10Ac9g21206 Beta vulgaris HOM05D005013 ORTHO05D006005 6.7e-152 542.0 516 60.3
unitig_52.g17097 Utricularia gibba HOM05D005013 ORTHO05D006005 5.7e-151 538.9 501 57.7
C09p74080 Brassica napus HOM05D005013 ORTHO05D006005 9.7e-151 538.1 378 69.6
BolC9t60139H Brassica oleracea HOM05D005013 ORTHO05D006005 9.1e-149 531.6 447 62.2
HanXRQChr09g0276241 Helianthus annuus HOM05D005013 ORTHO05D006005 2.0e-148 530.4 515 58.4
AUR62031914 Chenopodium quinoa HOM05D005013 ORTHO05D006005 3.2e-146 523.1 504 61.3
Ah.01g005800 Amaranthus hybridus HOM05D005013 ORTHO05D006005 7.2e-146 521.9 529 55.4
AUR62022205 Chenopodium quinoa HOM05D005013 ORTHO05D006005 6.1e-145 518.8 500 58.6
AL2G41830 Arabidopsis lyrata HOM05D005013 ORTHO05D006005 1.2e-140 504.6 481 60.5
Os08g0157100 Oryza sativa ssp. japonica HOM05D005013 ORTHO05D006005 1.6e-140 504.2 433 60.7
ATR0661G470 Amborella trichopoda HOM05D005013 ORTHO05D006005 2.0e-140 503.8 451 59.6
CAN.G1143.12 Capsicum annuum HOM05D005013 ORTHO05D006005 3.2e-138 496.5 471 57.5
Dinv30436 Davidia involucrata HOM05D005013 ORTHO05D006005 3.6e-137 493.0 370 75.7
Zm00001eb415930 Zea mays HOM05D005013 ORTHO05D006005 2.3e-136 490.3 413 60.5
Migut.D00991 Erythranthe guttata HOM05D005013 ORTHO05D006005 1.2e-127 461.5 371 64.7
CDE12G0264 Ceratophyllum demersum HOM05D005013 ORTHO05D006005 2.5e-122 443.7 418 58.4
Zm00001eb172540 Zea mays HOM05D005013 ORTHO05D006005 3.4e-119 433.3 328 64.9
Sc15g0001880 Simmondsia chinensis HOM05D005013 ORTHO05D006005 1.9e-117 427.6 355 70.4
Mapoly0123s0029 Marchantia polymorpha HOM05D005013 ORTHO05D006005 1.5e-111 407.9 425 52.7
Actinidia21716 Actinidia chinensis HOM05D005013 ORTHO05D006005 3.4e-111 406.8 286 74.1
BcaNung02135 Brassica carinata HOM05D005013 ORTHO05D006005 2.1e-108 397.5 355 59.4
AagrBONN_evm.TU.Sc2ySwM_117.3356 Anthoceros agrestis HOM05D005013 ORTHO05D006005 3.3e-106 390.2 442 51.1
Pp3c1_7460 Physcomitrium patens HOM05D005013 ORTHO05D006005 2.6e-103 380.6 441 48.3
SMO116G0383 Selaginella moellendorffii HOM05D005013 ORTHO05D006005 3.4e-103 380.2 417 49.6
TAR369G0672 Trochodendron aralioides HOM05D005013 ORTHO05D006005 3.2e-93 347.1 371 53.9
AL2G41840 Arabidopsis lyrata HOM05D005013 ORTHO05D006005 1.5e-90 338.2 213 78.4
SHI11095 Sapria himalayana HOM05D005013 ORTHO05D006005 2.4e-88 330.9 494 47.6
HPP92_015196 Vanilla planifolia HOM05D005013 ORTHO05D006005 6.9e-88 329.3 304 65.1
Cpa.g.sc109.1 Carica papaya HOM05D005013 ORTHO05D006005 1.4e-77 295.0 454 67.8
CDE06G0689 Ceratophyllum demersum HOM05D005013 ORTHO05D006005 1.0e-75 288.9 370 48.6
CBR_g8033 Chara braunii HOM05D005013 ORTHO05D006005 1.1e-74 285.4 353 45.0
Ah.01g022080 Amaranthus hybridus HOM05D005013 ORTHO05D006005 3.7e-73 280.4 496 41.1
BraA10t45345Z Brassica rapa HOM05D005013 ORTHO05D006005 4.5e-71 273.5 173 76.9
Cpa.g.sc109.3 Carica papaya HOM05D005013 ORTHO05D006005 5.8e-71 273.1 210 68.1
HPP92_015185 Vanilla planifolia HOM05D005013 ORTHO05D006005 1.8e-51 208.4 188 56.9
Migut.I00890 Erythranthe guttata HOM05D005013 ORTHO05D006005 3.8e-46 190.7 513 31.0
Lj5C53T3 Lonicera japonica HOM05D005013 ORTHO05D006005 1.1e-45 189.1 199 52.8
Oeu023599.1 Olea europaea HOM05D005013 ORTHO05D006005 7.9e-44 183.0 163 57.7
CARHR074670 Cardamine hirsuta HOM05D005013 ORTHO05D006005 4.2e-37 160.6 187 61.0
Psat4g155920 Pisum sativum HOM05D001854 ORTHO05D001800 5.7e-34 150.2 110 69.1
Psat4g155880 Pisum sativum HOM05D001854 ORTHO05D001800 1.3e-33 149.1 110 69.1
Lsat_1_v5_gn_6_46660 Lactuca sativa HOM05D005013 ORTHO05D006005 6.8e-27 126.7 95 65.3
Cre12.g520250 Chlamydomonas reinhardtii HOM05D005013 ORTHO05D006005 1.4e-24 119.0 235 35.3
MCO01G084 Micromonas commoda HOM05D005013 ORTHO05D006005 7.0e-24 116.7 354 29.1
CAN.G907.1 Capsicum annuum HOM05D005013 ORTHO05D006005 2.5e-21 108.2 87 60.9
Nn2g13410 Nelumbo nucifera HOM05D005013 ORTHO05D006005 7.2e-21 106.7 120 55.8
Oeu023601.1 Olea europaea HOM05D005013 ORTHO05D006005 1.7e-17 95.5 122 50.8
TAR560G0009 Trochodendron aralioides HOM05D005013 ORTHO05D006005 2.2e-17 95.1 119 68.1
CBR_g48652 Chara braunii HOM05D005013 ORTHO05D006005 5.9e-15 87.0 161 36.6
vmacro04324 Vaccinium macrocarpon HOM05D005013 ORTHO05D006005 5.9e-15 87.0 126 42.1
AL2G25330 Arabidopsis lyrata HOM05D005013 ORTHO05D006005 3.3e-13 81.3 106 50.0
Oeu026780.1 Olea europaea HOM05D005013 ORTHO05D006005 5.6e-13 80.5 127 61.4
Lsat_1_v5_gn_1_14160 Lactuca sativa HOM05D005013 ORTHO05D006005 7.3e-13 80.1 106 46.2
CAN.G1143.11 Capsicum annuum HOM05D005013 ORTHO05D115532 6.4e-09 67.0 44 65.9
CAN.G1143.9 Capsicum annuum HOM05D000602 ORTHO05D001147 1.1e-08 66.2 127 38.6
SEGI_39677 Sequoiadendron giganteum HOM05D050634 ORTHO05D006005 2.7e-07 61.6 113 37.2
Lsat_1_v5_gn_5_133740 Lactuca sativa HOM05D000912 ORTHO05D021086 4.6e-07 60.8 67 53.7


User provided reference genes

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