Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.R2LLHR Arachis hypogaea HOM05D001587 ORTHO05D008791 1.4e-290 1002.3 506 100.0
arahy.Tifrunner.gnm1.ann1.F22IQH Arachis hypogaea HOM05D001587 ORTHO05D008791 2.6e-278 961.4 527 92.8
Glyma.06G029000 Glycine max HOM05D001587 ORTHO05D008791 9.8e-124 448.0 500 55.4
Phvul.009G060300 Phaseolus vulgaris HOM05D001587 ORTHO05D008791 4.1e-122 442.6 500 53.6
Lj1g0011689 Lotus japonicus HOM05D001587 ORTHO05D008791 9.2e-122 441.4 463 54.9
Lalb_Chr08g0245991 Lupinus albus HOM05D001587 ORTHO05D008791 1.0e-120 438.0 469 55.0
TPR.G12317 Trifolium pratense HOM05D001587 ORTHO05D008791 3.9e-120 436.0 511 53.2
QL02p010191 Quercus lobata HOM05D001587 ORTHO05D008791 1.6e-110 404.1 439 53.5
Medtr3g112310 Medicago truncatula HOM05D001587 ORTHO05D008791 3.6e-110 402.9 484 51.4
VMungo1309G0203 Vigna mungo HOM05D001587 ORTHO05D008791 5.8e-108 395.6 477 51.4
FAN15G0115 Fragaria x ananassa HOM05D001587 ORTHO05D008791 4.1e-106 389.4 509 47.3
Manes.05G154300 Manihot esculenta HOM05D001587 ORTHO05D008791 4.6e-105 386.0 444 50.7
Atru.chr13.396 Acer truncatum HOM05D001587 ORTHO05D008791 1.0e-104 384.8 511 47.4
GSVIVG01009782001 Vitis vinifera HOM05D001587 ORTHO05D008791 1.7e-104 384.0 470 48.7
THA.LOC104813319 Tarenaya hassleriana HOM05D001587 ORTHO05D008791 2.3e-104 383.6 436 50.5
TWI56G0852 Tripterygium wilfordii HOM05D001587 ORTHO05D008791 3.0e-104 383.3 470 48.9
Prupe.1G373400 Prunus persica HOM05D001587 ORTHO05D008791 6.6e-104 382.1 435 51.3
Cpa.g.sc99.13 Carica papaya HOM05D001587 ORTHO05D008791 1.1e-103 381.3 508 47.0
FAN27G1828 Fragaria x ananassa HOM05D001587 ORTHO05D008791 1.1e-103 381.3 508 47.2
Sabra05G0179100 Salix brachista HOM05D001587 ORTHO05D002654 2.5e-103 380.2 442 50.0
Nitab4.5_0001861g0110 Nicotiana tabacum HOM05D001587 ORTHO05D008791 4.3e-103 379.4 456 47.8
Sed0025916 Sechium edule HOM05D001587 ORTHO05D008791 4.3e-103 379.4 505 45.7
Thecc.08G034500 Theobroma cacao HOM05D001587 ORTHO05D008791 4.3e-103 379.4 473 48.2
CAN.G851.40 Capsicum annuum HOM05D001587 ORTHO05D008791 5.6e-103 379.0 492 45.9
Potri.005G232200 Populus trichocarpa HOM05D001587 ORTHO05D008791 7.3e-103 378.6 440 50.2
COL.COLO4_26234 Corchorus olitorius HOM05D001587 ORTHO05D008791 9.6e-103 378.3 498 47.6
MELO3C010971.2 Cucumis melo HOM05D001587 ORTHO05D008791 1.2e-102 377.9 515 45.6
CsaV3_2G029060 Cucumis sativus L. HOM05D001587 ORTHO05D008791 1.2e-102 377.9 514 45.5
Gorai.010G007600 Gossypium raimondii HOM05D001587 ORTHO05D008791 1.6e-102 377.5 470 48.1
PGSC0003DMG400003752 Solanum tuberosum HOM05D001587 ORTHO05D008791 1.6e-102 377.5 458 48.0
Hma1.2p1_1194F.1_g265710 Hydrangea macrophylla HOM05D001587 ORTHO05D008791 2.1e-102 377.1 502 46.6
FvH4_2g39240 Fragaria vesca HOM05D001587 ORTHO05D008791 3.6e-102 376.3 508 46.1
AL1G52680 Arabidopsis lyrata HOM05D001587 ORTHO05D008791 6.2e-102 375.6 458 47.8
CSS0021558 Camellia sinensis var. sinensis HOM05D001587 ORTHO05D008791 6.2e-102 375.6 495 47.7
Nitab4.5_0005779g0030 Nicotiana tabacum HOM05D001587 ORTHO05D008791 6.2e-102 375.6 432 49.5
CSS0005575 Camellia sinensis var. sinensis HOM05D001587 ORTHO05D008791 1.4e-101 374.4 452 50.0
Sopen04g034390 Solanum pennellii HOM05D001587 ORTHO05D008791 1.4e-101 374.4 467 46.7
Solyc04g080800.4 Solanum lycopersicum HOM05D001587 ORTHO05D008791 1.8e-101 374.0 467 46.7
RcHm_v2.0_Chr6g0301771 Rosa chinensis HOM05D001587 ORTHO05D008791 2.4e-101 373.6 510 46.3
Gohir.D06G002700 Gossypium hirsutum HOM05D001587 ORTHO05D008791 4.0e-101 372.9 470 47.9
Peaxi162Scf00189g00920 Petunia axillaris HOM05D001587 ORTHO05D008791 4.0e-101 372.9 481 45.7
BcaC08g42893 Brassica carinata HOM05D001587 ORTHO05D008791 1.2e-100 371.3 438 48.6
C06p01170 Brassica napus HOM05D001587 ORTHO05D008791 1.2e-100 371.3 438 48.6
BolC6t35253H Brassica oleracea HOM05D001587 ORTHO05D008791 1.2e-100 371.3 438 48.6
Cc10_g02390 Coffea canephora HOM05D001587 ORTHO05D008791 2.0e-100 370.5 437 48.7
Carub.0001s3551 Capsella rubella HOM05D001587 ORTHO05D008791 4.4e-100 369.4 439 48.1
AT1G45110 Arabidopsis thaliana HOM05D001587 ORTHO05D008791 5.8e-100 369.0 458 46.9
A10p07100 Brassica napus HOM05D001587 ORTHO05D008791 5.8e-100 369.0 480 45.8
Eucgr.F01602 Eucalyptus grandis HOM05D001587 ORTHO05D008791 5.8e-100 369.0 493 46.0
MD15G1021600 Malus domestica HOM05D001587 ORTHO05D008791 5.8e-100 369.0 511 45.4
BraA10t42958Z Brassica rapa HOM05D001587 ORTHO05D008791 7.6e-100 368.6 480 45.8
CARHR036210 Cardamine hirsuta HOM05D001587 ORTHO05D008791 7.6e-100 368.6 439 48.5
Duzib041G0293 Durio zibethinus HOM05D001587 ORTHO05D008791 7.6e-100 368.6 460 47.6
Sp1g33880 Schrenkiella parvula HOM05D001587 ORTHO05D008791 7.6e-100 368.6 438 48.2
CANSAT35G0963 Cannabis sativa HOM05D001587 ORTHO05D008791 1.7e-99 367.5 476 47.3
BcaB07g33894 Brassica carinata HOM05D001587 ORTHO05D008791 2.9e-99 366.7 484 45.5
Lj4A33T83 Lonicera japonica HOM05D001587 ORTHO05D008791 4.9e-99 365.9 449 48.1
EL10Ac1g00602 Beta vulgaris HOM05D001587 ORTHO05D008791 8.4e-99 365.2 469 46.3
MSTRG.1247 Avicennia marina HOM05D001587 ORTHO05D008791 1.1e-98 364.8 504 44.0
AUR62034528 Chenopodium quinoa HOM05D001587 ORTHO05D008791 1.1e-98 364.8 470 47.7
Ciclev10001571m.g Citrus clementina HOM05D001587 ORTHO05D008791 1.1e-98 364.8 474 47.3
Ca_15490_v3 Cicer arietinum L. HOM05D001587 ORTHO05D008791 1.4e-98 364.4 381 55.4
Thhalv10011622m.g Eutrema salsugineum HOM05D001587 ORTHO05D008791 3.2e-98 363.2 436 48.6
vmacro04308 Vaccinium macrocarpon HOM05D001587 ORTHO05D008791 7.1e-98 362.1 597 42.4
Hund17199 Selenicereus undatus HOM05D001587 ORTHO05D008791 1.6e-97 360.9 502 45.0
Lsat_1_v5_gn_1_17201 Lactuca sativa HOM05D001587 ORTHO05D008791 2.1e-97 360.5 462 46.8
PSO541G2666 Papaver somniferum HOM05D001587 ORTHO05D008791 2.1e-97 360.5 487 45.2
Ah.05g180890 Amaranthus hybridus HOM05D001587 ORTHO05D008791 2.7e-97 360.1 435 47.6
Aa31sc185G120 Aethionema arabicum HOM05D001587 ORTHO05D008791 3.5e-97 359.8 500 45.0
Migut.C00772 Erythranthe guttata HOM05D001587 ORTHO05D008791 3.5e-97 359.8 517 43.9
Aqoxy6G01203 Aquilegia oxysepala HOM05D001587 ORTHO05D008791 6.0e-97 359.0 482 46.3
ECA247G3480 Erigeron canadensis HOM05D001587 ORTHO05D008791 7.8e-97 358.6 489 44.8
PSO675G8960 Papaver somniferum HOM05D001587 ORTHO05D008791 1.0e-96 358.2 488 45.5
HanXRQChr04g0099151 Helianthus annuus HOM05D001587 ORTHO05D008791 1.3e-96 357.8 454 47.4
Nn5g29720 Nelumbo nucifera HOM05D001587 ORTHO05D008791 1.7e-96 357.5 487 44.8
CDE04G1582 Ceratophyllum demersum HOM05D001587 ORTHO05D008791 2.3e-96 357.1 475 45.3
Sc15g0007180 Simmondsia chinensis HOM05D001587 ORTHO05D008791 5.1e-96 355.9 503 44.5
MBI11_g07616_MAGBIO Magnolia biondii HOM05D001587 ORTHO05D008791 8.7e-96 355.1 461 46.2
Haze_22561 Corylus avellana HOM05D001587 ORTHO05D008791 1.9e-95 354.0 478 47.9
FAN20G2929 Fragaria x ananassa HOM05D001587 ORTHO05D008791 6.2e-94 349.0 441 47.2
CiPaw.07G156300 Carya illinoinensis HOM05D001587 ORTHO05D008791 5.3e-93 345.9 414 49.8
Rhsim07G0243600 Rhododendron simsii HOM05D001587 ORTHO05D008791 2.2e-91 340.5 469 46.1
Dinv39461 Davidia involucrata HOM05D001587 ORTHO05D008791 3.2e-90 336.7 236 73.3
Psat0s471g0160 Pisum sativum HOM05D001587 ORTHO05D008791 7.1e-90 335.5 382 52.4
HPP92_024861 Vanilla planifolia HOM05D001587 ORTHO05D008791 7.1e-90 335.5 493 41.4
Actinidia15364 Actinidia chinensis HOM05D001587 ORTHO05D002654 3.5e-89 333.2 270 68.1
Gohir.A06G007600 Gossypium hirsutum HOM05D001587 ORTHO05D008791 4.6e-89 332.8 234 72.6
Zm00001eb048090 Zea mays HOM05D001587 ORTHO05D008791 6.0e-89 332.4 428 46.0
Os10g0414500 Oryza sativa ssp. japonica HOM05D001587 ORTHO05D008791 1.0e-88 331.6 433 45.5
SalBow7G1285 Salvia bowleyana HOM05D001587 ORTHO05D008791 1.0e-88 331.6 285 64.2
SGA_v2.0_scaffold11G05847 Striga asiatica HOM05D001587 ORTHO05D008791 3.6e-86 323.2 280 62.9
unitig_578.g16081 Utricularia gibba HOM05D001587 ORTHO05D008791 3.2e-82 310.1 491 42.2
vmacro07875 Vaccinium macrocarpon HOM05D001587 ORTHO05D008791 1.5e-79 301.2 184 82.1
ATR0665G135 Amborella trichopoda HOM05D001587 ORTHO05D008791 7.4e-79 298.9 411 42.3
ClCG08G014710 Citrullus lanatus HOM05D001587 ORTHO05D008791 1.4e-77 294.7 510 39.0
TAR628G1547 Trochodendron aralioides HOM05D001587 ORTHO05D008791 1.3e-72 278.1 473 40.8
AUR62014470 Chenopodium quinoa HOM05D001587 ORTHO05D008791 7.4e-71 272.3 378 43.4
Mapoly0042s0010 Marchantia polymorpha HOM05D001587 ORTHO05D008791 9.6e-71 271.9 195 67.7
Pp3c23_9730 Physcomitrium patens HOM05D001587 ORTHO05D008791 3.4e-68 263.5 430 38.1
Glyma.04G029000 Glycine max HOM05D001587 ORTHO05D008791 2.5e-66 257.3 183 75.4
Ca_29810_v3 Cicer arietinum L. HOM05D001587 ORTHO05D008791 4.2e-66 256.5 197 70.6
SMO169G0295 Selaginella moellendorffii HOM05D001587 ORTHO05D008791 2.7e-65 253.8 450 36.0
AagrBONN_evm.TU.Sc2ySwM_344.3744 Anthoceros agrestis HOM05D001587 ORTHO05D008791 1.9e-63 247.7 455 35.6
AagrBONN_evm.TU.Sc2ySwM_344.3737 Anthoceros agrestis HOM05D001587 ORTHO05D008791 1.0e-56 225.3 200 57.0
MD08G1024000 Malus domestica HOM05D001587 ORTHO05D008791 1.7e-54 218.0 540 34.1
Dinv31791 Davidia involucrata HOM05D001587 ORTHO05D002654 6.9e-53 212.6 212 57.5
MCO14G527 Micromonas commoda HOM05D001587 ORTHO05D008791 3.2e-50 203.8 203 50.2
Psat3g187600 Pisum sativum HOM05D001587 ORTHO05D008791 6.7e-48 196.1 316 41.8
Cre13.g572000 Chlamydomonas reinhardtii HOM05D001587 ORTHO05D008791 1.5e-47 194.9 199 51.3
Psat3g187640 Pisum sativum HOM05D001587 ORTHO05D008791 6.5e-43 179.5 348 37.6
PRCOL_00005810 Prasinoderma coloniale HOM05D001587 ORTHO05D008791 1.2e-36 158.7 212 42.5
Manes.18G021412 Manihot esculenta HOM05D001587 ORTHO05D008791 1.5e-31 141.7 380 32.1
Psat5g097560 Pisum sativum HOM05D000922 ORTHO05D008791 2.5e-26 124.4 362 31.8
SEGI_08976 Sequoiadendron giganteum HOM05D001587 ORTHO05D008791 3.6e-25 120.6 105 61.0
SEGI_23158 Sequoiadendron giganteum HOM05D001587 ORTHO05D008791 3.6e-25 120.6 105 61.0
CARHR174630 Cardamine hirsuta HOM05D001587 ORTHO05D014867 4.0e-24 117.1 92 62.0
AL1G52690 Arabidopsis lyrata HOM05D001587 ORTHO05D014867 8.8e-24 115.9 92 60.9
Ca_02074_v3 Cicer arietinum L. HOM05D001587 ORTHO05D008791 3.4e-23 114.0 117 56.4
Hma1.2p1_1194F.1_g265720 Hydrangea macrophylla HOM05D001587 ORTHO05D014867 1.3e-22 112.1 95 60.0
Psat5g097640 Pisum sativum HOM05D000922 ORTHO05D001851 2.9e-19 100.9 355 28.2
CARHR293210 Cardamine hirsuta HOM05D001587 ORTHO05D008791 6.1e-17 93.2 64 73.4
Psat4g126360 Pisum sativum HOM05D001587 ORTHO05D037360 8.9e-16 89.4 55 78.2
COL.COLO4_00685 Corchorus olitorius HOM05D030008 ORTHO05D034598 4.1e-13 80.5 152 33.6
CSS0001111 Camellia sinensis var. sinensis HOM05D001587 ORTHO05D014867 3.0e-11 74.3 58 62.1
CSS0020626 Camellia sinensis var. sinensis HOM05D001587 ORTHO05D014867 3.0e-11 74.3 58 62.1
CSS0029664 Camellia sinensis var. sinensis HOM05D001587 ORTHO05D014867 3.0e-11 74.3 58 62.1
CSS0031048 Camellia sinensis var. sinensis HOM05D001587 ORTHO05D014867 3.0e-11 74.3 58 62.1
CSS0048350 Camellia sinensis var. sinensis HOM05D001587 ORTHO05D014867 3.0e-11 74.3 58 62.1
CSS0002416 Camellia sinensis var. sinensis HOM05D001587 ORTHO05D014867 3.9e-11 73.9 58 62.1
CSS0046073 Camellia sinensis var. sinensis HOM05D001587 ORTHO05D014867 3.9e-11 73.9 58 62.1
CSS0016398 Camellia sinensis var. sinensis HOM05D001587 ORTHO05D014867 1.9e-10 71.6 58 60.3
Psat2g069600 Pisum sativum HOM05D000263 ORTHO05D009363 8.0e-09 66.2 45 75.6
SEGI_08644 Sequoiadendron giganteum HOM05D001587 ORTHO05D014867 1.5e-07 62.0 63 44.4


User provided reference genes

Program Settings