Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.QRYF2V Arachis hypogaea HOM05D004826 ORTHO05D006367 3.4e-141 505.0 252 100.0
arahy.Tifrunner.gnm1.ann1.XCP3P1 Arachis hypogaea HOM05D004826 ORTHO05D006367 3.9e-97 358.6 252 79.0
arahy.Tifrunner.gnm1.ann1.ZSCD81 Arachis hypogaea HOM05D004826 ORTHO05D006367 4.8e-63 245.4 331 50.2
arahy.Tifrunner.gnm1.ann1.HM2HLZ Arachis hypogaea HOM05D004826 ORTHO05D006367 7.0e-62 241.5 327 50.2
Glyma.03G155900 Glycine max HOM05D004826 ORTHO05D006367 3.1e-46 189.5 325 41.5
Glyma.19G158200 Glycine max HOM05D004826 ORTHO05D006367 4.1e-46 189.1 321 41.4
Ca_08614_v3 Cicer arietinum L. HOM05D004826 ORTHO05D006367 1.2e-45 187.6 328 39.3
Psat3g063080 Pisum sativum HOM05D004826 ORTHO05D006367 2.0e-45 186.8 329 39.8
Medtr7g095190 Medicago truncatula HOM05D004826 ORTHO05D006367 3.5e-45 186.0 327 40.4
VMungo1383G1287 Vigna mungo HOM05D004826 ORTHO05D006367 5.9e-45 185.3 324 40.4
Phvul.001G153300 Phaseolus vulgaris HOM05D004826 ORTHO05D006367 7.7e-45 184.9 321 40.8
Lj1g0007005 Lotus japonicus HOM05D004826 ORTHO05D006367 2.9e-44 183.0 327 41.9
TPR.G24327 Trifolium pratense HOM05D004826 ORTHO05D006367 1.5e-43 180.6 327 39.4
Lalb_Chr01g0020091 Lupinus albus HOM05D004826 ORTHO05D006367 2.7e-42 176.4 334 40.4
Ca_08622_v3 Cicer arietinum L. HOM05D004826 ORTHO05D006367 1.4e-38 164.1 303 38.3
MD11G1282600 Malus domestica HOM05D004826 ORTHO05D006367 4.1e-38 162.5 327 38.5
Haze_04685 Corylus avellana HOM05D004826 ORTHO05D006367 1.6e-37 160.6 325 38.5
Prupe.8G238200 Prunus persica HOM05D004826 ORTHO05D006367 3.5e-37 159.5 336 37.8
GSVIVG01001175001 Vitis vinifera HOM05D004826 ORTHO05D006367 3.5e-37 159.5 331 36.9
Actinidia24908 Actinidia chinensis HOM05D004826 ORTHO05D006367 5.9e-37 158.7 336 36.3
Cpa.g.sc2545.1 Carica papaya HOM05D004826 ORTHO05D006367 1.0e-36 157.9 344 36.9
CSS0031998 Camellia sinensis var. sinensis HOM05D004826 ORTHO05D006367 1.3e-36 157.5 336 36.6
Dinv34775 Davidia involucrata HOM05D004826 ORTHO05D006367 1.3e-36 157.5 325 37.2
CSS0030159 Camellia sinensis var. sinensis HOM05D004826 ORTHO05D006367 2.3e-36 156.8 336 36.3
FvH4_2g23260 Fragaria vesca HOM05D004826 ORTHO05D006367 3.8e-36 156.0 332 36.7
FAN27G1728 Fragaria x ananassa HOM05D004826 ORTHO05D006367 5.0e-36 155.6 334 36.5
FAN20G2615 Fragaria x ananassa HOM05D004826 ORTHO05D006367 1.9e-35 153.7 334 35.9
Manes.05G079700 Manihot esculenta HOM05D004826 ORTHO05D006367 1.9e-35 153.7 327 36.4
CANSAT25G1434 Cannabis sativa HOM05D004826 ORTHO05D006367 5.5e-35 152.1 331 36.0
FAN24G0969 Fragaria x ananassa HOM05D004826 ORTHO05D006367 5.5e-35 152.1 332 36.4
TWI75G1621 Tripterygium wilfordii HOM05D004826 ORTHO05D006367 5.5e-35 152.1 333 37.5
FAN15G0865 Fragaria x ananassa HOM05D004826 ORTHO05D006367 2.1e-34 150.2 334 35.6
RcHm_v2.0_Chr6g0290561 Rosa chinensis HOM05D004826 ORTHO05D006367 2.1e-34 150.2 335 35.2
COL.COLO4_09064 Corchorus olitorius HOM05D004826 ORTHO05D003095 2.8e-34 149.8 324 36.4
CsaV3_7G027950 Cucumis sativus L. HOM05D004826 ORTHO05D006367 4.7e-34 149.1 334 35.9
TAR633G1509 Trochodendron aralioides HOM05D004826 ORTHO05D006367 4.7e-34 149.1 341 34.9
Hma1.2p1_0822F.1_g224300 Hydrangea macrophylla HOM05D004826 ORTHO05D006367 6.1e-34 148.7 329 36.8
Cc01_g19270 Coffea canephora HOM05D004826 ORTHO05D006367 1.0e-33 147.9 333 34.5
Nn1g02359 Nelumbo nucifera HOM05D004826 ORTHO05D006367 1.4e-33 147.5 333 36.3
Duzib138G1281 Durio zibethinus HOM05D004826 ORTHO05D006367 5.2e-33 145.6 325 36.0
Aqoxy5G00445 Aquilegia oxysepala HOM05D004826 ORTHO05D006367 6.8e-33 145.2 325 35.4
Ciclev10020269m.g Citrus clementina HOM05D004826 ORTHO05D006367 1.2e-32 144.4 329 36.2
MELO3C015814.2 Cucumis melo HOM05D004826 ORTHO05D006367 1.2e-32 144.4 334 35.3
Potri.005G211600 Populus trichocarpa HOM05D004826 ORTHO05D006367 1.2e-32 144.4 332 34.3
Sp1g02120 Schrenkiella parvula HOM05D004826 ORTHO05D006367 1.5e-32 144.1 332 34.6
Thecc.01G275300 Theobroma cacao HOM05D004826 ORTHO05D006367 1.5e-32 144.1 325 34.8
CARHR002460 Cardamine hirsuta HOM05D004826 ORTHO05D006367 2.6e-32 143.3 316 35.8
Gorai.008G003800 Gossypium raimondii HOM05D004826 ORTHO05D006367 2.6e-32 143.3 325 35.7
ECA236G2315 Erigeron canadensis HOM05D004826 ORTHO05D006367 3.4e-32 142.9 320 35.3
Gohir.D12G004000 Gossypium hirsutum HOM05D004826 ORTHO05D006367 3.4e-32 142.9 325 35.4
THA.LOC104801247 Tarenaya hassleriana HOM05D004826 ORTHO05D006367 3.4e-32 142.9 328 35.7
Gohir.A12G004300 Gossypium hirsutum HOM05D004826 ORTHO05D006367 4.4e-32 142.5 325 35.4
Thhalv10007706m.g Eutrema salsugineum HOM05D004826 ORTHO05D006367 1.3e-31 141.0 335 33.7
Eucgr.K03351 Eucalyptus grandis HOM05D004826 ORTHO05D006367 2.2e-31 140.2 330 34.2
BcaC07g42266 Brassica carinata HOM05D004826 ORTHO05D002453 2.8e-31 139.8 319 34.5
AT1G03110 Arabidopsis thaliana HOM05D004826 ORTHO05D006367 1.4e-30 137.5 333 33.6
vmacro14910 Vaccinium macrocarpon HOM05D004826 ORTHO05D006367 1.4e-30 137.5 339 34.8
A09p68350 Brassica napus HOM05D004826 ORTHO05D002453 1.8e-30 137.1 324 34.0
Lj1A48T56 Lonicera japonica HOM05D004826 ORTHO05D006367 2.4e-30 136.7 338 34.6
AL1G12580 Arabidopsis lyrata HOM05D004826 ORTHO05D006367 7.0e-30 135.2 332 34.0
BraA09t42171Z Brassica rapa HOM05D004826 ORTHO05D002453 7.0e-30 135.2 326 33.4
HanXRQChr04g0118961 Helianthus annuus HOM05D004826 ORTHO05D006367 9.2e-30 134.8 329 32.8
Lsat_1_v5_gn_8_56761 Lactuca sativa HOM05D004826 ORTHO05D006367 2.0e-29 133.7 319 33.2
Aa31LG1G9410 Aethionema arabicum HOM05D004826 ORTHO05D006367 2.7e-29 133.3 347 33.1
DCAR_002720 Daucus carota HOM05D004826 ORTHO05D006367 2.7e-29 133.3 320 32.5
PGSC0003DMG400005331 Solanum tuberosum HOM05D004826 ORTHO05D006367 2.7e-29 133.3 333 34.2
Carub.0001s0225 Capsella rubella HOM05D004826 ORTHO05D006367 3.5e-29 132.9 329 34.3
SalBow4G1440 Salvia bowleyana HOM05D004826 ORTHO05D006367 5.9e-29 132.1 334 33.8
Solyc06g008700.3 Solanum lycopersicum HOM05D004826 ORTHO05D006367 5.9e-29 132.1 329 34.0
Sopen06g003480 Solanum pennellii HOM05D004826 ORTHO05D006367 5.9e-29 132.1 329 33.7
Migut.D00320 Erythranthe guttata HOM05D004826 ORTHO05D006367 7.8e-29 131.7 334 32.9
Os03g0746800 Oryza sativa ssp. japonica HOM05D004826 ORTHO05D006367 1.7e-28 130.6 336 33.6
Atru.chr5.1473 Acer truncatum HOM05D004826 ORTHO05D006367 2.3e-28 130.2 270 37.0
Oeu025741.1 Olea europaea HOM05D004826 ORTHO05D006367 3.9e-28 129.4 327 34.3
Rhsim01G0273300 Rhododendron simsii HOM05D004826 ORTHO05D006367 5.0e-28 129.0 325 32.6
PGR044G1874 Punica granatum HOM05D004826 ORTHO05D006367 8.6e-28 128.3 286 37.4
PSO210G5512 Papaver somniferum HOM05D004826 ORTHO05D006367 1.9e-27 127.1 318 32.7
PSO832G3843 Papaver somniferum HOM05D004826 ORTHO05D006367 2.5e-27 126.7 318 32.7
QL12p021024 Quercus lobata HOM05D004826 ORTHO05D006367 3.3e-27 126.3 414 30.9
CDE06G0967 Ceratophyllum demersum HOM05D004826 ORTHO05D006367 5.6e-27 125.6 331 29.9
ClCG09G007220 Citrullus lanatus HOM05D004826 ORTHO05D006367 1.6e-26 124.0 372 32.3
Sc17g0001330 Simmondsia chinensis HOM05D004826 ORTHO05D006367 4.7e-26 122.5 320 31.9
Ah.02g110880 Amaranthus hybridus HOM05D004826 ORTHO05D006367 8.0e-26 121.7 333 32.4
A08p37480 Brassica napus HOM05D004826 ORTHO05D006367 8.0e-26 121.7 333 31.8
MD03G1261900 Malus domestica HOM05D004826 ORTHO05D006367 1.4e-25 120.9 300 36.3
MSTRG.18248 Avicennia marina HOM05D004826 ORTHO05D006367 1.8e-25 120.6 330 33.3
Zm00001eb215000 Zea mays HOM05D004826 ORTHO05D006367 3.1e-25 119.8 277 33.2
BolC8t52808H Brassica oleracea HOM05D004826 ORTHO05D002453 1.2e-24 117.9 319 32.6
A10p01740 Brassica napus HOM05D004826 ORTHO05D006367 3.4e-24 116.3 323 32.2
C08p52920 Brassica napus HOM05D004826 ORTHO05D002453 4.4e-24 115.9 309 32.4
Peaxi162Scf00572g00217 Petunia axillaris HOM05D004826 ORTHO05D006367 5.8e-24 115.5 333 32.4
EL10Ac5g10541 Beta vulgaris HOM05D004826 ORTHO05D006367 1.7e-23 114.0 350 32.0
BolC8t46840H Brassica oleracea HOM05D004826 ORTHO05D006367 1.7e-23 114.0 342 31.3
C08p00410 Brassica napus HOM05D004826 ORTHO05D006367 2.2e-23 113.6 334 32.0
BraA08t35646Z Brassica rapa HOM05D004826 ORTHO05D006367 8.3e-23 111.7 343 30.6
AUR62028599 Chenopodium quinoa HOM05D004826 ORTHO05D006367 1.9e-22 110.5 335 31.0
Sabra05G0161700 Salix brachista HOM05D004826 ORTHO05D006367 1.6e-21 107.5 347 29.4
HPP92_006117 Vanilla planifolia HOM05D004826 ORTHO05D006367 1.0e-20 104.8 325 29.8
Nitab4.5_0005696g0030 Nicotiana tabacum HOM05D004826 ORTHO05D006367 1.2e-18 97.8 291 30.9
CiPaw.07G089800 Carya illinoinensis HOM05D004826 ORTHO05D006367 2.1e-18 97.1 231 34.2
RcHm_v2.0_Chr6g0290571 Rosa chinensis HOM05D004826 ORTHO05D006367 2.1e-18 97.1 224 33.9
AUR62032326 Chenopodium quinoa HOM05D004826 ORTHO05D006367 1.1e-17 94.7 112 47.3
unitig_0.g133 Utricularia gibba HOM05D004826 ORTHO05D006367 1.1e-17 94.7 341 28.2
C05p01720 Brassica napus HOM05D004826 ORTHO05D006367 9.8e-16 88.2 330 28.5
SEGI_35891 Sequoiadendron giganteum HOM05D004826 ORTHO05D006367 9.8e-16 88.2 326 26.7
arahy.Tifrunner.gnm1.ann1.DV54YZ Arachis hypogaea HOM05D004826 ORTHO05D006367 7.1e-14 82.0 43 100.0
Hma1.2p1_0822F.1_g224310 Hydrangea macrophylla HOM05D004826 ORTHO05D006367 7.8e-13 78.6 185 35.1
Pp3c3_10370 Physcomitrium patens HOM05D004826 ORTHO05D006367 1.5e-11 74.3 302 24.5
CSS0007905 Camellia sinensis var. sinensis HOM05D004826 ORTHO05D006367 2.5e-11 73.6 42 76.2
TWI12G0215 Tripterygium wilfordii HOM05D004826 ORTHO05D006367 3.3e-11 73.2 42 76.2
CSS0022346 Camellia sinensis var. sinensis HOM05D004826 ORTHO05D006367 4.3e-11 72.8 42 76.2
SHI16389 Sapria himalayana HOM05D000105 ORTHO05D000023 7.3e-11 72.0 168 32.1
CiPaw.07G089700 Carya illinoinensis HOM05D004826 ORTHO05D006367 2.8e-10 70.1 104 43.3
Mapoly0048s0007 Marchantia polymorpha HOM05D004826 ORTHO05D006367 2.8e-10 70.1 111 36.9
SGA_v2.0_scaffold138G35320 Striga asiatica HOM05D004826 ORTHO05D006367 4.7e-10 69.3 222 30.2
Gorai.005G155300 Gossypium raimondii HOM05D004826 ORTHO05D006367 1.4e-09 67.8 61 54.1
Hma1.2p1_0822F.1_g224290 Hydrangea macrophylla HOM05D004826 ORTHO05D006367 1.8e-09 67.4 98 44.9
Sed0001689 Sechium edule HOM05D004826 ORTHO05D006367 1.8e-09 67.4 108 40.7
SMO358G0471 Selaginella moellendorffii HOM05D004826 ORTHO05D006367 1.8e-09 67.4 106 37.7
Gohir.D02G138850 Gossypium hirsutum HOM05D004826 ORTHO05D006367 2.3e-09 67.0 61 54.1
BcaNung01308 Brassica carinata HOM05D004826 ORTHO05D006367 6.8e-09 65.5 250 29.6
ATR0665G626 Amborella trichopoda HOM05D004826 ORTHO05D006367 1.2e-08 64.7 103 40.8
C01p00020 Brassica napus HOM05D004826 ORTHO05D006367 2.0e-08 63.9 241 29.5
BolC1t00008H Brassica oleracea HOM05D004826 ORTHO05D006367 2.6e-08 63.5 203 29.6
BolC1t00011H Brassica oleracea HOM05D004826 ORTHO05D006367 2.6e-08 63.5 203 29.6
CBR_g19915 Chara braunii HOM05D004826 ORTHO05D006367 2.6e-08 63.5 108 35.2
QL12p021035 Quercus lobata HOM05D004826 ORTHO05D006367 2.6e-08 63.5 82 48.8
BraA10t42449Z Brassica rapa HOM05D004826 ORTHO05D006367 1.7e-07 60.8 176 29.5
BcaNung01310 Brassica carinata HOM05D004826 ORTHO05D006367 3.7e-07 59.7 191 27.7


User provided reference genes

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