Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.QL9R2N Arachis hypogaea HOM05D004537 ORTHO05D005492 1.1e-308 1062.4 528 100.0
arahy.Tifrunner.gnm1.ann1.FSQ0ED Arachis hypogaea HOM05D004537 ORTHO05D005492 1.1e-306 1055.8 528 99.4
arahy.Tifrunner.gnm1.ann1.JYE7Y9 Arachis hypogaea HOM05D004537 ORTHO05D005492 1.1e-306 1055.8 528 99.4
LjContig00315g0003687 Lotus japonicus HOM05D004537 ORTHO05D005492 1.6e-305 1052.0 528 98.9
Cpa.g.sc263.4 Carica papaya HOM05D004537 ORTHO05D005492 7.0e-298 1026.5 527 97.3
QL10p061777 Quercus lobata HOM05D004537 ORTHO05D005492 2.2e-296 1021.5 527 97.0
Gorai.001G162500 Gossypium raimondii HOM05D004537 ORTHO05D005492 8.5e-296 1019.6 525 96.8
CAN.G78.1 Capsicum annuum HOM05D004537 ORTHO05D005492 2.0e-292 1008.4 528 95.8
HanXRQChr10g0310851 Helianthus annuus HOM05D004537 ORTHO05D005492 4.8e-291 1003.8 528 95.5
HanXRQChr14g0433461 Helianthus annuus HOM05D004537 ORTHO05D005492 4.8e-291 1003.8 528 95.5
HanXRQMTg0579341 Helianthus annuus HOM05D004537 ORTHO05D005492 4.8e-291 1003.8 528 95.5
Hma1.2p1_0136F.1_g062006 Hydrangea macrophylla HOM05D004537 ORTHO05D005492 4.8e-291 1003.8 526 95.6
CAN.G1109.10 Capsicum annuum HOM05D004537 ORTHO05D005492 3.1e-290 1001.1 528 95.1
arahy.Tifrunner.gnm1.ann1.19WC2D Arachis hypogaea HOM05D004537 ORTHO05D005492 3.4e-284 981.1 527 93.7
ATMG01360 Arabidopsis thaliana HOM05D004537 ORTHO05D005492 4.4e-284 980.7 528 93.9
A04p09350 Brassica napus HOM05D004537 ORTHO05D005492 4.4e-284 980.7 528 93.9
BolSC28t60367H Brassica oleracea HOM05D004537 ORTHO05D005492 4.4e-284 980.7 528 93.9
BraSC48t46236Z Brassica rapa HOM05D004537 ORTHO05D005492 4.4e-284 980.7 528 93.9
CARHR283530 Cardamine hirsuta HOM05D004537 ORTHO05D005492 4.4e-284 980.7 528 93.9
Sc08g0004810 Simmondsia chinensis HOM05D004537 ORTHO05D005492 3.7e-283 977.6 524 94.3
CANSAT16G0002 Cannabis sativa HOM05D004537 ORTHO05D005492 8.3e-283 976.5 524 93.9
QL04p031979 Quercus lobata HOM05D004537 ORTHO05D005492 7.8e-281 969.9 527 92.6
DCAR_032457 Daucus carota HOM05D004537 ORTHO05D005492 2.9e-275 951.4 499 95.8
Solyc00g500186.1 Solanum lycopersicum HOM05D004537 ORTHO05D005492 3.7e-275 951.0 499 95.8
Solyc00g500250.1 Solanum lycopersicum HOM05D004537 ORTHO05D005492 3.7e-275 951.0 499 95.8
Solyc00g500349.1 Solanum lycopersicum HOM05D004537 ORTHO05D005492 3.7e-275 951.0 499 95.8
Nn1g10090 Nelumbo nucifera HOM05D004537 ORTHO05D005492 1.3e-267 926.0 499 94.2
RcHm_v2.0_Chr6g0256731 Rosa chinensis HOM05D004537 ORTHO05D005492 1.7e-267 925.6 499 93.8
Sed0020696 Sechium edule HOM05D004537 ORTHO05D005492 2.7e-265 918.3 499 93.6
Ca_07436_v3 Cicer arietinum L. HOM05D004537 ORTHO05D005492 3.0e-264 914.8 508 91.7
Ca_30901_v3 Cicer arietinum L. HOM05D004537 ORTHO05D005492 1.9e-263 912.1 503 92.2
ClCG04G003500 Citrullus lanatus HOM05D004537 ORTHO05D005492 2.0e-260 902.1 516 90.3
SabraMtG0005600 Salix brachista HOM05D004537 ORTHO05D005492 1.7e-259 899.0 527 88.2
Gorai.013G213100 Gossypium raimondii HOM05D004537 ORTHO05D005492 2.4e-258 895.2 525 86.9
Sopen05g012670 Solanum pennellii HOM05D004537 ORTHO05D005492 2.4e-250 868.6 457 95.6
Solyc07g019510.4 Solanum lycopersicum HOM05D004537 ORTHO05D005492 6.0e-249 864.0 528 83.7
Dinv06725 Davidia involucrata HOM05D004537 ORTHO05D005492 1.7e-243 845.9 489 89.2
CDE02G4726 Ceratophyllum demersum HOM05D004537 ORTHO05D005492 6.0e-241 837.4 498 86.5
SEGI_28485 Sequoiadendron giganteum HOM05D004537 ORTHO05D005492 2.1e-238 828.9 522 83.3
Ah.00g237940 Amaranthus hybridus HOM05D004537 ORTHO05D005492 9.0e-237 823.5 479 87.9
CAN.G1167.11 Capsicum annuum HOM05D004537 ORTHO05D005492 9.9e-228 793.5 457 89.5
BraSC159t45726Z Brassica rapa HOM05D004537 ORTHO05D005492 3.8e-227 791.6 421 95.2
BolSC28t60311H Brassica oleracea HOM05D004537 ORTHO05D005492 1.4e-226 789.6 420 95.2
Sed0009736 Sechium edule HOM05D004537 ORTHO05D005492 7.4e-223 777.3 489 83.6
Actinidia34915 Actinidia chinensis HOM05D004537 ORTHO05D005492 3.7e-222 775.0 452 88.5
Sed0024638 Sechium edule HOM05D004537 ORTHO05D005492 1.1e-221 773.5 455 88.6
Sp3g25790 Schrenkiella parvula HOM05D004537 ORTHO05D005492 5.3e-205 718.0 392 93.1
HanXRQChr04g0127251 Helianthus annuus HOM05D004537 ORTHO05D005492 1.3e-203 713.4 462 81.2
Lalb_Chr00c21g0405801 Lupinus albus HOM05D004537 ORTHO05D005492 5.0e-195 684.9 461 79.0
Aqoxy12s002 Aquilegia oxysepala HOM05D004537 ORTHO05D005492 5.7e-191 671.4 355 94.4
Nitab4.5_0001127g0230 Nicotiana tabacum HOM05D004537 ORTHO05D005492 2.0e-183 646.4 457 76.4
SHI26645 Sapria himalayana HOM05D004537 ORTHO05D005492 3.5e-172 609.0 318 94.3
COL.COLO4_04173 Corchorus olitorius HOM05D004537 ORTHO05D005492 7.7e-172 607.8 400 79.8
PGSC0003DMG400002971 Solanum tuberosum HOM05D004537 ORTHO05D005492 1.2e-159 567.4 297 97.3
Nitab4.5_0001761g0020 Nicotiana tabacum HOM05D004537 ORTHO05D005492 6.6e-155 551.6 355 80.3
Ah.01g011750 Amaranthus hybridus HOM05D004537 ORTHO05D005492 2.5e-154 549.7 522 60.3
AUR62042353 Chenopodium quinoa HOM05D004537 ORTHO05D005492 2.3e-147 526.6 284 92.3
RhsimMtG0000400 Rhododendron simsii HOM05D004537 ORTHO05D005492 1.8e-144 516.9 317 83.9
Gohir.D04G096416 Gossypium hirsutum HOM05D004537 ORTHO05D005492 5.2e-144 515.4 365 75.3
AUR62026821 Chenopodium quinoa HOM05D004537 ORTHO05D005492 1.5e-143 513.8 284 90.8
Psat0s12108g0080 Pisum sativum HOM05D004537 ORTHO05D005492 2.2e-142 510.0 254 98.4
unitig_87.g28000 Utricularia gibba HOM05D004537 ORTHO05D005492 4.9e-134 482.3 254 94.5
Psat3g040160 Pisum sativum HOM05D004537 ORTHO05D005492 3.5e-132 476.1 527 54.3
HanXRQChr08g0236111 Helianthus annuus HOM05D004537 ORTHO05D005492 1.1e-130 471.1 254 92.9
Solyc11g063610.3 Solanum lycopersicum HOM05D004537 ORTHO05D005492 2.1e-129 466.8 265 90.9
unitig_87.g28001 Utricularia gibba HOM05D004537 ORTHO05D005492 1.1e-128 464.5 242 96.7
SHI35293 Sapria himalayana HOM05D004537 ORTHO05D005492 4.0e-128 462.6 659 46.3
Ah.14g079610 Amaranthus hybridus HOM05D004537 ORTHO05D005492 1.3e-126 457.6 250 91.2
Pp3c4_28940 Physcomitrium patens HOM05D004537 ORTHO05D005492 3.5e-124 449.5 274 83.2
Pp3c4_28946 Physcomitrium patens HOM05D004537 ORTHO05D005492 3.5e-124 449.5 274 83.2
LjContig00315g0010412 Lotus japonicus HOM05D004537 ORTHO05D005492 8.1e-121 438.3 307 75.2
PSO384G3370 Papaver somniferum HOM05D004537 ORTHO05D005492 7.9e-116 421.8 227 95.2
RcHm_v2.0_MTg0498791 Rosa chinensis HOM05D004537 ORTHO05D005492 5.1e-115 419.1 235 91.5
HanXRQChr04g0127221 Helianthus annuus HOM05D004537 ORTHO05D005492 2.6e-111 406.8 222 94.6
Nitab4.5_0000866g0210 Nicotiana tabacum HOM05D004537 ORTHO05D005492 7.9e-108 395.2 312 71.2
EL10Ac5g12442 Beta vulgaris HOM05D004537 ORTHO05D005492 1.0e-102 378.3 235 82.1
Haze_27145 Corylus avellana HOM05D004537 ORTHO05D005492 3.2e-101 373.2 432 49.8
SMO053G0009 Selaginella moellendorffii HOM05D004537 ORTHO05D005492 1.8e-99 367.5 427 54.1
BraSC48t46325Z Brassica rapa HOM05D004537 ORTHO05D005492 5.1e-99 365.9 204 92.2
Nn003s41396 Nelumbo nucifera HOM05D004537 ORTHO05D005492 1.5e-95 354.4 189 93.1
Nn1g09964 Nelumbo nucifera HOM05D004537 ORTHO05D005492 1.5e-95 354.4 189 93.1
Nn1g10125 Nelumbo nucifera HOM05D004537 ORTHO05D005492 1.5e-95 354.4 189 93.1
Nitab4.5_0000019g0180 Nicotiana tabacum HOM05D004537 ORTHO05D005492 7.7e-95 352.1 355 58.9
MD13G1127000 Malus domestica HOM05D004537 ORTHO05D005492 1.7e-94 350.9 262 76.7
RcHm_v2.0_MTg0498781 Rosa chinensis HOM05D004537 ORTHO05D005492 6.5e-94 349.0 189 91.5
HanXRQChr04g0127211 Helianthus annuus HOM05D004537 ORTHO05D005492 1.4e-91 341.3 189 89.9
TPR.G4012 Trifolium pratense HOM05D004537 ORTHO05D005492 1.9e-85 320.9 161 99.4
AUR62044038 Chenopodium quinoa HOM05D004537 ORTHO05D005492 3.0e-83 313.5 504 42.3
Solyc08g029280.2 Solanum lycopersicum HOM05D004537 ORTHO05D005492 2.6e-82 310.5 321 56.4
CAN.G61.11 Capsicum annuum HOM05D004537 ORTHO05D005492 3.7e-81 306.6 328 54.3
CAN.G416.37 Capsicum annuum HOM05D004537 ORTHO05D005492 5.5e-77 292.7 197 76.6
Haze_27101 Corylus avellana HOM05D004537 ORTHO05D005492 2.3e-75 287.3 373 40.8
Solyc02g021770.1 Solanum lycopersicum HOM05D004537 ORTHO05D005492 2.2e-73 280.8 159 89.9
Nitab4.5_0000592g0100 Nicotiana tabacum HOM05D004537 ORTHO05D005492 2.9e-70 270.4 434 44.9
PGR071G0006 Punica granatum HOM05D004537 ORTHO05D005492 2.6e-58 230.7 180 68.9
MELO3C027747.2 Cucumis melo HOM05D004537 ORTHO05D005492 7.5e-58 229.2 118 96.6
SHI26667 Sapria himalayana HOM05D004537 ORTHO05D005492 1.7e-57 228.0 244 55.7
Lalb_Chr11g0071071 Lupinus albus HOM05D004537 ORTHO05D005492 2.2e-57 227.6 128 86.7
Haze_27411 Corylus avellana HOM05D004537 ORTHO05D005492 1.1e-56 225.3 283 49.8
TAR022G0004 Trochodendron aralioides HOM05D004537 ORTHO05D005492 1.7e-54 218.0 134 74.6
SHI27475 Sapria himalayana HOM05D004537 ORTHO05D005492 5.0e-54 216.5 183 66.1
Migut.E01634 Erythranthe guttata HOM05D004537 ORTHO05D005492 6.6e-54 216.1 138 81.9
Migut.E00896 Erythranthe guttata HOM05D004537 ORTHO05D005492 2.1e-52 211.1 137 81.0
BraSC48t46324Z Brassica rapa HOM05D004537 ORTHO05D005492 2.8e-52 210.7 235 56.6
MELO3C021523.2 Cucumis melo HOM05D004537 ORTHO05D005492 1.8e-51 208.0 148 75.7
SHI20135 Sapria himalayana HOM05D004537 ORTHO05D005492 2.6e-50 204.1 175 64.0
Ah.10g027900 Amaranthus hybridus HOM05D004537 ORTHO05D005492 4.1e-48 196.8 105 89.5
Ah.10g028280 Amaranthus hybridus HOM05D004537 ORTHO05D005492 4.1e-48 196.8 105 89.5
HPP92_007209 Vanilla planifolia HOM05D004537 ORTHO05D005492 5.4e-48 196.4 100 96.0
SHI27477 Sapria himalayana HOM05D004537 ORTHO05D005492 5.9e-47 193.0 227 51.5
CARHR288190 Cardamine hirsuta HOM05D004537 ORTHO05D005492 6.6e-46 189.5 105 88.6
Medtr8g106255 Medicago truncatula HOM05D004537 ORTHO05D005492 9.5e-45 185.7 91 96.7
HanXRQChr05g0159721 Helianthus annuus HOM05D004537 ORTHO05D005492 1.2e-44 185.3 109 82.6
CAN.G505.7 Capsicum annuum HOM05D004537 ORTHO05D005492 8.0e-44 182.6 153 68.0
Medtr0024s0110 Medicago truncatula HOM05D004537 ORTHO05D005492 6.8e-43 179.5 197 52.8
Eucgr.E01613 Eucalyptus grandis HOM05D004537 ORTHO05D005492 3.4e-42 177.2 95 95.8
SalBow1G2743 Salvia bowleyana HOM05D004537 ORTHO05D005492 8.3e-41 172.6 95 89.5
CAN.G60.10 Capsicum annuum HOM05D004537 ORTHO05D005492 1.1e-40 172.2 165 59.4
CAN.G889.6 Capsicum annuum HOM05D004537 ORTHO05D005492 5.4e-40 169.9 91 94.5
SGA_v2.0_scaffold400G50927 Striga asiatica HOM05D004537 ORTHO05D005492 1.6e-39 168.3 94 88.3
Nitab4.5_0000074g0200 Nicotiana tabacum HOM05D004537 ORTHO05D005492 1.7e-38 164.9 104 77.9
Aa31csc464G10 Aethionema arabicum HOM05D004537 ORTHO05D005492 8.6e-38 162.5 91 87.9
Glyma.03G094400 Glycine max HOM05D004537 ORTHO05D005492 1.9e-37 161.4 81 93.8
CAN.G999.40 Capsicum annuum HOM05D004537 ORTHO05D005492 2.5e-37 161.0 156 59.0
Lsat_1_v5_gn_8_134521 Lactuca sativa HOM05D004537 ORTHO05D005492 4.0e-35 153.7 99 78.8
Nitab4.5_0000161g0030 Nicotiana tabacum HOM05D008163 ORTHO05D010305 9.8e-34 149.1 124 64.5
SHI27476 Sapria himalayana HOM05D004537 ORTHO05D005492 1.7e-33 148.3 92 79.3
Lalb_Chr20g0115011 Lupinus albus HOM05D004537 ORTHO05D005492 2.9e-33 147.5 112 72.3
SHI01747 Sapria himalayana HOM05D004537 ORTHO05D005492 4.9e-33 146.7 170 56.5
SHI26666 Sapria himalayana HOM05D004537 ORTHO05D005492 3.2e-32 144.1 119 64.7
SHI36146 Sapria himalayana HOM05D004537 ORTHO05D005492 3.5e-31 140.6 85 83.5
GSVIVG01020676001 Vitis vinifera HOM05D004537 ORTHO05D005492 2.5e-29 134.4 129 60.5
Lsat_1_v5_gn_4_114400 Lactuca sativa HOM05D004537 ORTHO05D005492 3.6e-28 130.6 89 75.3
SHI20133 Sapria himalayana HOM05D004537 ORTHO05D005492 4.0e-27 127.1 80 78.8
Lalb_Chr00c21g0405811 Lupinus albus HOM05D004537 ORTHO05D005492 8.3e-25 119.4 56 98.2
Solyc08g029290.1 Solanum lycopersicum HOM05D004537 ORTHO05D005492 4.6e-23 113.6 76 75.0
Nitab4.5_0001234g0100 Nicotiana tabacum HOM05D004537 ORTHO05D005492 2.3e-22 111.3 82 78.0
GSVIVG01012277001 Vitis vinifera HOM05D004537 ORTHO05D005492 3.9e-22 110.5 239 36.4
HanXRQChr16g0503301 Helianthus annuus HOM05D004537 ORTHO05D005492 1.5e-21 108.6 109 56.0
Mapoly0006s0021 Marchantia polymorpha HOM05D004537 ORTHO05D005492 9.6e-21 105.9 65 80.0
ClCG09G001530 Citrullus lanatus HOM05D004537 ORTHO05D005492 1.1e-19 102.4 68 77.9
C04p32420 Brassica napus HOM05D004537 ORTHO05D005492 1.7e-17 95.1 70 72.9
ECA240G1937 Erigeron canadensis HOM05D004537 ORTHO05D011667 4.2e-16 90.5 47 93.6
EL10Ac5g12760 Beta vulgaris HOM05D004537 ORTHO05D005492 9.3e-16 89.4 46 89.1
TPR.G39033 Trifolium pratense HOM05D004537 ORTHO05D005492 2.3e-14 84.7 50 82.0
CAN.G1103.8 Capsicum annuum HOM05D004537 ORTHO05D005492 3.9e-14 84.0 53 77.4
SHI20134 Sapria himalayana HOM05D004537 ORTHO05D005492 8.7e-14 82.8 50 80.0
Nitab4.5_0001127g0350 Nicotiana tabacum HOM05D004537 ORTHO05D005492 1.1e-13 82.4 42 90.5
MELO3C021574.2 Cucumis melo HOM05D004537 ORTHO05D005492 3.3e-13 80.9 50 82.0
TPR.G9938 Trifolium pratense HOM05D004537 ORTHO05D005492 3.3e-13 80.9 57 73.7
Nitab4.5_0002322g0200 Nicotiana tabacum HOM05D004537 ORTHO05D015169 7.3e-13 79.7 41 92.7
Ah.03g142980 Amaranthus hybridus HOM05D001159 ORTHO05D005492 6.2e-12 76.6 48 81.2
ATR1125G006 Amborella trichopoda HOM05D004537 ORTHO05D005492 4.0e-11 73.9 33 97.0
arahy.Tifrunner.gnm1.ann1.7DQW64 Arachis hypogaea HOM05D000963 ORTHO05D005131 1.3e-09 68.9 34 94.1
Nitab4.5_0004798g0040 Nicotiana tabacum HOM05D005259 ORTHO05D006402 1.3e-09 68.9 36 88.9
BolC4t24790H Brassica oleracea HOM05D004537 ORTHO05D005492 6.4e-09 66.6 35 85.7
Nitab4.5_0003938g0030 Nicotiana tabacum HOM05D004537 ORTHO05D005492 1.9e-08 65.1 50 66.0


User provided reference genes

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