Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.QG9RQP Arachis hypogaea HOM05D030826 ORTHO05D023738 3.0e-115 418.7 234 100.0
arahy.Tifrunner.gnm1.ann1.2T8CWQ Arachis hypogaea HOM05D030826 ORTHO05D023738 2.2e-25 120.2 83 79.5
arahy.Tifrunner.gnm1.ann1.JKX03W Arachis hypogaea HOM05D030826 ORTHO05D023738 3.1e-24 116.3 80 80.0
arahy.Tifrunner.gnm1.ann1.65LDWI Arachis hypogaea HOM05D030826 ORTHO05D023738 9.1e-24 114.8 83 78.3
arahy.Tifrunner.gnm1.ann1.6F2C80 Arachis hypogaea HOM05D006503 ORTHO05D008116 5.2e-19 99.0 72 80.6
arahy.Tifrunner.gnm1.ann1.1EF43V Arachis hypogaea HOM05D006308 ORTHO05D007820 1.2e-12 77.8 42 92.9
arahy.Tifrunner.gnm1.ann1.HXV25C Arachis hypogaea HOM05D006308 ORTHO05D007820 1.6e-12 77.4 72 63.9
arahy.Tifrunner.gnm1.ann1.1E2X9I Arachis hypogaea HOM05D006253 ORTHO05D007666 2.1e-12 77.0 63 76.2
Medtr2g069470 Medicago truncatula HOM05D006308 ORTHO05D007820 2.6e-10 70.1 113 45.1
arahy.Tifrunner.gnm1.ann1.PGF04L Arachis hypogaea HOM05D053074 ORTHO05D023738 9.8e-10 68.2 53 73.6
Ca_03675_v3 Cicer arietinum L. HOM05D006308 ORTHO05D007820 9.8e-10 68.2 114 47.4
TPR.G9745 Trifolium pratense HOM05D006308 ORTHO05D007820 9.8e-10 68.2 42 78.6
Hma1.2p1_0334F.1_g128750 Hydrangea macrophylla HOM05D006308 ORTHO05D007820 3.7e-09 66.2 103 47.6
Lalb_Chr20g0108751 Lupinus albus HOM05D006308 ORTHO05D007820 4.9e-09 65.9 42 78.6
CSS0031885 Camellia sinensis var. sinensis HOM05D006308 ORTHO05D007820 6.3e-09 65.5 77 53.2
CSS0041769 Camellia sinensis var. sinensis HOM05D006308 ORTHO05D007820 6.3e-09 65.5 77 53.2
QL08p064492 Quercus lobata HOM05D006308 ORTHO05D007820 8.3e-09 65.1 44 72.7
Glyma.15G255800 Glycine max HOM05D006308 ORTHO05D007820 1.4e-08 64.3 42 76.2
Cpa.g.sc10.49 Carica papaya HOM05D006308 ORTHO05D007820 3.1e-08 63.2 44 65.9
Lj3g0010937 Lotus japonicus HOM05D006308 ORTHO05D007820 3.1e-08 63.2 42 73.8
Sc06g0001530 Simmondsia chinensis HOM05D006308 ORTHO05D007820 4.1e-08 62.8 42 71.4
Actinidia07353 Actinidia chinensis HOM05D006308 ORTHO05D007820 5.4e-08 62.4 92 45.7
Phvul.005G057100 Phaseolus vulgaris HOM05D006308 ORTHO05D007820 5.4e-08 62.4 42 71.4
Rhsim06G0239000 Rhododendron simsii HOM05D006308 ORTHO05D007820 7.0e-08 62.0 74 52.7
VMungo1080G0665 Vigna mungo HOM05D006308 ORTHO05D007820 7.0e-08 62.0 64 54.7
Nitab4.5_0001080g0030 Nicotiana tabacum HOM05D004008 ORTHO05D005383 9.2e-08 61.6 79 46.8
Nitab4.5_0001749g0010 Nicotiana tabacum HOM05D004008 ORTHO05D005383 9.2e-08 61.6 77 49.4
Glyma.08G172200 Glycine max HOM05D006308 ORTHO05D007820 1.2e-07 61.2 115 42.6
Psat1g011160 Pisum sativum HOM05D006308 ORTHO05D007820 1.2e-07 61.2 112 41.1
CiPaw.12G004900 Carya illinoinensis HOM05D006308 ORTHO05D007820 2.7e-07 60.1 45 66.7
Manes.14G016400 Manihot esculenta HOM05D006308 ORTHO05D007820 2.7e-07 60.1 39 74.4
Migut.M01556 Erythranthe guttata HOM05D006308 ORTHO05D007820 4.5e-07 59.3 42 69.0
EL10Ac2g03321 Beta vulgaris HOM05D006308 ORTHO05D007820 5.9e-07 58.9 42 64.3
Eucgr.F01457 Eucalyptus grandis HOM05D006308 ORTHO05D007820 5.9e-07 58.9 45 68.9
MBI04_g08705_MAGBIO Magnolia biondii HOM05D006308 ORTHO05D007820 5.9e-07 58.9 44 65.9
Solyc07g066460.3 Solanum lycopersicum HOM05D006308 ORTHO05D007820 5.9e-07 58.9 42 64.3
Sopen07g034640 Solanum pennellii HOM05D006308 ORTHO05D007820 5.9e-07 58.9 42 64.3
PGSC0003DMG400022127 Solanum tuberosum HOM05D006308 ORTHO05D007820 5.9e-07 58.9 42 64.3
Atru.chr2.1759 Acer truncatum HOM05D006308 ORTHO05D007820 7.8e-07 58.5 42 66.7
Ah.16g106540 Amaranthus hybridus HOM05D006308 ORTHO05D007820 7.8e-07 58.5 42 66.7
Dinv42509 Davidia involucrata HOM05D006308 ORTHO05D007820 7.8e-07 58.5 109 44.0
Aqoxy5G00928 Aquilegia oxysepala HOM05D006308 ORTHO05D007820 1.0e-06 58.2 42 69.0
CAN.G943.39 Capsicum annuum HOM05D006308 ORTHO05D007820 1.0e-06 58.2 97 38.1
AUR62043126 Chenopodium quinoa HOM05D006308 ORTHO05D007820 1.3e-06 57.8 42 61.9
DCAR_016822 Daucus carota HOM05D006308 ORTHO05D007820 1.3e-06 57.8 42 66.7
Lj1A905G40 Lonicera japonica HOM05D006308 ORTHO05D007820 1.3e-06 57.8 42 66.7
SalBow8G4544 Salvia bowleyana HOM05D006308 ORTHO05D007820 1.3e-06 57.8 46 63.0
Actinidia12793 Actinidia chinensis HOM05D006308 ORTHO05D007820 1.7e-06 57.4 58 56.9
THA.LOC104822752 Tarenaya hassleriana HOM05D006308 ORTHO05D007820 1.7e-06 57.4 41 70.7
MELO3C016177.2 Cucumis melo HOM05D006308 ORTHO05D007820 2.3e-06 57.0 42 64.3
RcHm_v2.0_Chr5g0026561 Rosa chinensis HOM05D006308 ORTHO05D007820 2.3e-06 57.0 42 64.3
Haze_08539 Corylus avellana HOM05D006308 ORTHO05D007820 2.9e-06 56.6 45 62.2
SGA_v2.0_scaffold186G40217 Striga asiatica HOM05D006308 ORTHO05D007820 2.9e-06 56.6 42 61.9
CsaV3_4G007640 Cucumis sativus L. HOM05D006308 ORTHO05D007820 3.8e-06 56.2 42 61.9
BraA05t22456Z Brassica rapa HOM05D006308 ORTHO05D007820 5.0e-06 55.8 71 47.9
Ciclev10021874m.g Citrus clementina HOM05D006308 ORTHO05D007820 5.0e-06 55.8 42 64.3
TAR381G0490 Trochodendron aralioides HOM05D006308 ORTHO05D007820 5.0e-06 55.8 42 61.9
GSVIVG01020411001 Vitis vinifera HOM05D006308 ORTHO05D007820 5.0e-06 55.8 109 43.1
Potri.011G142900 Populus trichocarpa HOM05D006308 ORTHO05D007820 6.6e-06 55.5 39 69.2
FvH4_3g15760 Fragaria vesca HOM05D006308 ORTHO05D007820 8.6e-06 55.1 42 61.9
FAN11G0128 Fragaria x ananassa HOM05D006308 ORTHO05D007820 8.6e-06 55.1 42 61.9
FAN21G3038 Fragaria x ananassa HOM05D006308 ORTHO05D007820 8.6e-06 55.1 42 61.9


User provided reference genes

Program Settings