Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.QC9P0E Arachis hypogaea HOM05D004186 ORTHO05D006965 1.4e-270 935.6 456 100.0
arahy.Tifrunner.gnm1.ann1.WFV6V5 Arachis hypogaea HOM05D004186 ORTHO05D006965 2.1e-266 921.8 456 98.9
Lj4g0000380 Lotus japonicus HOM05D004186 ORTHO05D006965 3.0e-233 811.6 480 83.8
Ca_21198_v3 Cicer arietinum L. HOM05D004186 ORTHO05D006965 1.3e-231 806.2 480 82.9
VMungo1215G1034 Vigna mungo HOM05D004186 ORTHO05D006965 1.2e-229 799.7 480 81.7
TPR.G5301 Trifolium pratense HOM05D004186 ORTHO05D006965 2.3e-228 795.4 478 82.0
Glyma.17G066200 Glycine max HOM05D004186 ORTHO05D006965 3.0e-228 795.0 480 81.7
Phvul.003G148700 Phaseolus vulgaris HOM05D004186 ORTHO05D006965 3.9e-228 794.7 480 81.2
Lalb_Chr11g0072331 Lupinus albus HOM05D004186 ORTHO05D006965 2.5e-227 792.0 480 81.2
Psat0ss9363g0320 Pisum sativum HOM05D004186 ORTHO05D006965 2.8e-226 788.5 452 84.5
arahy.Tifrunner.gnm1.ann1.CAM23Q Arachis hypogaea HOM05D004186 ORTHO05D006965 1.8e-225 785.8 477 81.6
Medtr4g128840 Medicago truncatula HOM05D004186 ORTHO05D006965 1.8e-225 785.8 481 80.9
Thecc.10G167400 Theobroma cacao HOM05D004186 ORTHO05D006965 1.5e-219 766.1 479 78.9
Duzib128G0608 Durio zibethinus HOM05D004186 ORTHO05D006965 1.2e-218 763.1 473 79.1
Duzib034G0005 Durio zibethinus HOM05D004186 ORTHO05D006965 2.8e-218 761.9 479 78.7
TAR625G0733 Trochodendron aralioides HOM05D004186 ORTHO05D006965 4.7e-218 761.1 481 78.2
Dinv42759 Davidia involucrata HOM05D004186 ORTHO05D006965 6.2e-218 760.8 482 78.0
Dinv43343 Davidia involucrata HOM05D004186 ORTHO05D006965 6.2e-218 760.8 482 78.0
CSS0041373 Camellia sinensis var. sinensis HOM05D004186 ORTHO05D006965 1.8e-217 759.2 476 79.0
GSVIVG01029114001 Vitis vinifera HOM05D004186 ORTHO05D006965 4.0e-217 758.1 481 78.0
Duzib114G0309 Durio zibethinus HOM05D004186 ORTHO05D006965 5.2e-217 757.7 479 78.3
Manes.06G027600 Manihot esculenta HOM05D004186 ORTHO05D006965 6.8e-217 757.3 480 78.1
Rhsim01G0008400 Rhododendron simsii HOM05D004186 ORTHO05D006965 2.6e-216 755.4 484 77.1
FvH4_4g32520 Fragaria vesca HOM05D004186 ORTHO05D006965 5.8e-216 754.2 480 77.7
FAN12G1387 Fragaria x ananassa HOM05D004186 ORTHO05D006965 5.8e-216 754.2 484 77.3
RcHm_v2.0_Chr4g0403601 Rosa chinensis HOM05D004186 ORTHO05D006965 5.8e-216 754.2 480 77.7
Prupe.1G091900 Prunus persica HOM05D004186 ORTHO05D006965 9.8e-216 753.4 481 77.1
BraA10t43588Z Brassica rapa HOM05D004186 ORTHO05D006965 2.2e-215 752.3 478 76.6
Hma1.2p1_1261F.1_g271200 Hydrangea macrophylla HOM05D004186 ORTHO05D006965 4.9e-215 751.1 455 80.4
RhsimUnG0079700 Rhododendron simsii HOM05D004186 ORTHO05D006965 4.9e-215 751.1 484 76.9
QL02p096850 Quercus lobata HOM05D004186 ORTHO05D006965 6.4e-215 750.7 479 77.0
TAR636G1430 Trochodendron aralioides HOM05D004186 ORTHO05D006965 8.3e-215 750.4 481 77.1
A10p15060 Brassica napus HOM05D004186 ORTHO05D006965 1.4e-214 749.6 478 76.2
BcaB08g36123 Brassica carinata HOM05D004186 ORTHO05D006965 1.9e-214 749.2 478 76.2
Potri.018G096049 Populus trichocarpa HOM05D004186 ORTHO05D006965 1.9e-214 749.2 479 77.2
Oeu054233.2 Olea europaea HOM05D004186 ORTHO05D006965 3.2e-214 748.4 480 76.5
MD16G1265900 Malus domestica HOM05D004186 ORTHO05D006965 4.1e-214 748.0 479 76.8
TWI32G0580 Tripterygium wilfordii HOM05D004186 ORTHO05D006965 5.4e-214 747.7 480 77.3
C09p49530 Brassica napus HOM05D004186 ORTHO05D006965 9.2e-214 746.9 478 75.9
Cpa.g.sc75.2 Carica papaya HOM05D004186 ORTHO05D006965 9.2e-214 746.9 478 76.8
Gorai.009G296100 Gossypium raimondii HOM05D004186 ORTHO05D006965 1.2e-213 746.5 474 77.8
Atru.chr7.741 Acer truncatum HOM05D004186 ORTHO05D006965 1.6e-213 746.1 478 76.4
BcaC04g19942 Brassica carinata HOM05D004186 ORTHO05D006965 1.6e-213 746.1 478 76.2
CANSAT11G0657 Cannabis sativa HOM05D004186 ORTHO05D006965 2.1e-213 745.7 480 76.9
Migut.J01448 Erythranthe guttata HOM05D004186 ORTHO05D006965 2.1e-213 745.7 479 76.8
Gohir.A05G280700 Gossypium hirsutum HOM05D004186 ORTHO05D006965 2.1e-213 745.7 474 77.4
Sp6g19340 Schrenkiella parvula HOM05D004186 ORTHO05D006965 2.1e-213 745.7 478 75.5
Cc06_g13640 Coffea canephora HOM05D004186 ORTHO05D006965 3.5e-213 745.0 480 76.2
Migut.K00260 Erythranthe guttata HOM05D004186 ORTHO05D006965 3.5e-213 745.0 480 76.5
Gohir.D05G282700 Gossypium hirsutum HOM05D004186 ORTHO05D006965 3.5e-213 745.0 474 77.8
Thhalv10013406m.g Eutrema salsugineum HOM05D004186 ORTHO05D006965 4.6e-213 744.6 479 75.6
SGA_v2.0_scaffold69G23283 Striga asiatica HOM05D004186 ORTHO05D006965 4.6e-213 744.6 475 76.8
AT5G57655 Arabidopsis thaliana HOM05D004186 ORTHO05D006965 6.0e-213 744.2 478 75.7
arahy.Tifrunner.gnm1.ann1.YY53PU Arachis hypogaea HOM05D004186 ORTHO05D006965 6.0e-213 744.2 502 75.3
THA.LOC104813530 Tarenaya hassleriana HOM05D004186 ORTHO05D006965 6.0e-213 744.2 478 76.8
Actinidia04122 Actinidia chinensis HOM05D004186 ORTHO05D006965 1.0e-212 743.4 477 76.7
CiPaw.08G037900 Carya illinoinensis HOM05D004186 ORTHO05D006965 1.7e-212 742.7 479 76.8
Ciclev10008154m.g Citrus clementina HOM05D004186 ORTHO05D006965 2.3e-212 742.3 479 76.8
AL8G33680 Arabidopsis lyrata HOM05D004186 ORTHO05D006965 3.0e-212 741.9 471 76.2
CARHR271410 Cardamine hirsuta HOM05D004186 ORTHO05D006965 5.1e-212 741.1 479 75.6
HanXRQChr05g0136751 Helianthus annuus HOM05D004186 ORTHO05D006965 6.6e-212 740.7 486 75.3
Peaxi162Scf00942g00127 Petunia axillaris HOM05D004186 ORTHO05D006965 8.6e-212 740.3 477 76.5
Carub.0008s1816 Capsella rubella HOM05D004186 ORTHO05D006965 1.1e-211 740.0 478 75.1
Nitab4.5_0001212g0070 Nicotiana tabacum HOM05D004186 ORTHO05D006965 1.5e-211 739.6 442 80.8
PGSC0003DMG400027477 Solanum tuberosum HOM05D004186 ORTHO05D006965 1.9e-211 739.2 476 76.1
BolC9t57806H Brassica oleracea HOM05D004186 ORTHO05D006965 2.5e-211 738.8 486 74.9
PSO063G2639 Papaver somniferum HOM05D004186 ORTHO05D006965 2.5e-211 738.8 479 77.0
ECA236G4107 Erigeron canadensis HOM05D004186 ORTHO05D006965 5.6e-211 737.6 480 75.8
Lsat_1_v5_gn_8_66460 Lactuca sativa HOM05D004186 ORTHO05D006965 7.3e-211 737.3 480 75.6
Nitab4.5_0000244g0180 Nicotiana tabacum HOM05D004186 ORTHO05D006965 7.3e-211 737.3 442 80.3
Cpa.g.sc95.75 Carica papaya HOM05D004186 ORTHO05D006965 1.6e-210 736.1 478 75.9
CiPaw.07G189100 Carya illinoinensis HOM05D004186 ORTHO05D006965 1.6e-210 736.1 478 76.6
EL10Ac8g18262 Beta vulgaris HOM05D004186 ORTHO05D006965 2.1e-210 735.7 471 76.9
DCAR_017956 Daucus carota HOM05D004186 ORTHO05D006965 2.1e-210 735.7 452 77.7
Manes.02G134800 Manihot esculenta HOM05D004186 ORTHO05D006965 4.7e-210 734.6 479 75.4
Sopen07g002760 Solanum pennellii HOM05D004186 ORTHO05D006965 6.2e-210 734.2 476 75.2
Lj9A689G39 Lonicera japonica HOM05D004186 ORTHO05D006965 1.4e-209 733.0 452 78.3
Solyc07g006650.4 Solanum lycopersicum HOM05D004186 ORTHO05D006965 1.4e-209 733.0 476 75.2
Sed0027081 Sechium edule HOM05D004186 ORTHO05D006965 2.3e-209 732.3 478 75.3
Aa31LG3G13490 Aethionema arabicum HOM05D004186 ORTHO05D006965 4.0e-209 731.5 486 73.0
SalBow6G3740 Salvia bowleyana HOM05D004186 ORTHO05D006965 5.2e-209 731.1 486 75.1
Os07g0669100 Oryza sativa ssp. japonica HOM05D004186 ORTHO05D006965 8.9e-209 730.3 483 73.7
PSO782G1691 Papaver somniferum HOM05D004186 ORTHO05D006965 1.2e-208 729.9 479 76.6
Sc08g0005470 Simmondsia chinensis HOM05D004186 ORTHO05D006965 2.6e-208 728.8 478 74.9
CsaV3_2G008080 Cucumis sativus L. HOM05D004186 ORTHO05D006965 3.4e-208 728.4 478 74.5
ATR0580G261 Amborella trichopoda HOM05D004186 ORTHO05D006965 1.3e-207 726.5 478 73.4
HPP92_013702 Vanilla planifolia HOM05D004186 ORTHO05D006965 1.7e-207 726.1 480 74.0
CDE04G0897 Ceratophyllum demersum HOM05D004186 ORTHO05D006965 2.2e-207 725.7 481 75.3
COL.COLO4_09973 Corchorus olitorius HOM05D004186 ORTHO05D006965 3.8e-207 724.9 490 74.3
MSTRG.19694 Avicennia marina HOM05D004186 ORTHO05D006965 6.4e-207 724.2 480 74.0
Zm00001eb330180 Zea mays HOM05D004186 ORTHO05D006965 1.1e-206 723.4 440 77.7
CAN.G584.24 Capsicum annuum HOM05D004186 ORTHO05D006965 2.4e-206 722.2 476 74.6
MELO3C004075.2 Cucumis melo HOM05D004186 ORTHO05D006965 4.1e-206 721.5 478 73.4
ClCG11G012460 Citrullus lanatus HOM05D004186 ORTHO05D006965 5.4e-206 721.1 478 73.8
AUR62039990 Chenopodium quinoa HOM05D004186 ORTHO05D006965 1.2e-205 719.9 471 74.9
Zm00001eb111020 Zea mays HOM05D004186 ORTHO05D006965 1.2e-205 719.9 446 76.9
AUR62040296 Chenopodium quinoa HOM05D004186 ORTHO05D006965 2.7e-205 718.8 471 74.7
Eucgr.G01193 Eucalyptus grandis HOM05D004186 ORTHO05D006965 3.0e-204 715.3 495 71.9
Ah.14g083970 Amaranthus hybridus HOM05D004186 ORTHO05D006965 1.1e-203 713.4 463 76.0
FAN22G1241 Fragaria x ananassa HOM05D004186 ORTHO05D006965 6.2e-202 707.6 493 73.2
Gohir.A06G175800 Gossypium hirsutum HOM05D004186 ORTHO05D006965 8.7e-196 687.2 463 73.9
FAN07G2198 Fragaria x ananassa HOM05D004186 ORTHO05D006965 9.6e-195 683.7 510 69.8
Hund26412 Selenicereus undatus HOM05D004186 ORTHO05D006965 1.9e-190 669.5 443 75.4
MBI14_g39543_MAGBIO Magnolia biondii HOM05D004186 ORTHO05D006965 7.9e-189 664.1 479 70.8
Mapoly0030s0071 Marchantia polymorpha HOM05D004186 ORTHO05D006965 8.1e-186 654.1 467 67.2
SMO259G0020 Selaginella moellendorffii HOM05D004186 ORTHO05D006965 1.8e-185 652.9 449 69.3
Pp3c6_6020 Physcomitrium patens HOM05D004186 ORTHO05D006965 1.2e-184 650.2 474 66.7
Haze_22131 Corylus avellana HOM05D004186 ORTHO05D006965 4.5e-184 648.3 508 67.5
AagrBONN_evm.TU.Sc2ySwM_228.4505 Anthoceros agrestis HOM05D004186 ORTHO05D006965 3.8e-183 645.2 474 68.1
Nn2g12639 Nelumbo nucifera HOM05D004186 ORTHO05D006965 3.5e-181 638.6 482 67.6
Dinv41278 Davidia involucrata HOM05D004186 ORTHO05D006965 3.1e-177 625.5 376 79.3
vmacro13097 Vaccinium macrocarpon HOM05D004186 ORTHO05D006965 2.9e-175 619.0 502 65.9
Gohir.D06G185466 Gossypium hirsutum HOM05D004186 ORTHO05D006965 2.3e-164 582.8 355 78.0
Hund09010 Selenicereus undatus HOM05D004186 ORTHO05D006965 2.3e-164 582.8 432 68.3
unitig_26.g9078 Utricularia gibba HOM05D004186 ORTHO05D006965 4.3e-163 578.6 450 66.2
Gorai.010G217000 Gossypium raimondii HOM05D004186 ORTHO05D006965 2.4e-161 572.8 355 77.2
Oeu052240.1 Olea europaea HOM05D004186 ORTHO05D006965 4.1e-161 572.0 483 62.7
Aqoxy7G03142 Aquilegia oxysepala HOM05D004186 ORTHO05D006965 1.0e-148 530.8 466 60.5
Zm00001eb347580 Zea mays HOM05D004186 ORTHO05D006965 9.1e-137 491.1 295 76.9
arahy.Tifrunner.gnm1.ann1.6S67WQ Arachis hypogaea HOM05D004186 ORTHO05D006965 1.7e-130 470.3 281 82.6
Zm00001eb059010 Zea mays HOM05D004186 ORTHO05D006965 1.7e-130 470.3 295 74.9
arahy.Tifrunner.gnm1.ann1.LBE3WY Arachis hypogaea HOM05D004186 ORTHO05D006965 5.4e-129 465.3 275 82.9
SalBow6G1169 Salvia bowleyana HOM05D004186 ORTHO05D006965 2.0e-128 463.4 408 62.0
MCO08G279 Micromonas commoda HOM05D004186 ORTHO05D006965 2.6e-123 446.4 412 56.1
PRCOL_00002845 Prasinoderma coloniale HOM05D004186 ORTHO05D006965 4.3e-118 429.1 417 51.8
MD13G1265000 Malus domestica HOM05D004186 ORTHO05D006965 1.7e-114 417.2 306 69.0
Zm00001eb194710 Zea mays HOM05D004186 ORTHO05D006965 6.4e-114 415.2 299 67.6
SEGI_37950 Sequoiadendron giganteum HOM05D004186 ORTHO05D006965 1.2e-99 367.9 254 70.5
TWI34G1113 Tripterygium wilfordii HOM05D004186 ORTHO05D006965 6.0e-88 328.9 230 71.3
SEGI_15575 Sequoiadendron giganteum HOM05D004186 ORTHO05D006965 2.5e-86 323.6 235 68.5
SEGI_36533 Sequoiadendron giganteum HOM05D004186 ORTHO05D006965 2.5e-86 323.6 235 68.5
BcaC03g14138 Brassica carinata HOM05D004186 ORTHO05D032859 5.3e-76 289.3 416 41.8
MD13G1264900 Malus domestica HOM05D004186 ORTHO05D006965 3.9e-71 273.1 200 69.0
BolC2t07527H Brassica oleracea HOM05D004186 ORTHO05D032859 5.3e-68 262.7 463 38.4
SalBow6G2747 Salvia bowleyana HOM05D004186 ORTHO05D015971 7.6e-67 258.8 141 83.0
arahy.Tifrunner.gnm1.ann1.P4UX3D Arachis hypogaea HOM05D004186 ORTHO05D015971 3.9e-63 246.5 180 67.2
A02p08350 Brassica napus HOM05D004186 ORTHO05D015971 1.1e-62 245.0 179 66.5
arahy.Tifrunner.gnm1.ann1.NDN785 Arachis hypogaea HOM05D004186 ORTHO05D015971 4.3e-62 243.0 172 68.6
BraA02t05904Z Brassica rapa HOM05D004186 ORTHO05D015971 7.4e-62 242.3 179 65.9
C02p14070 Brassica napus HOM05D004186 ORTHO05D032859 7.4e-54 215.7 427 35.8
Rhsim01G0008600 Rhododendron simsii HOM05D004186 ORTHO05D015971 1.6e-48 198.0 99 86.9
RhsimUnG0079500 Rhododendron simsii HOM05D004186 ORTHO05D015971 1.6e-48 198.0 99 86.9
A02p08340 Brassica napus HOM05D004186 ORTHO05D006965 1.3e-42 178.3 108 76.9
SMO181G0029 Selaginella moellendorffii HOM05D004186 ORTHO05D006965 6.3e-37 159.5 105 72.4
HanXRQChr09g0269751 Helianthus annuus HOM05D004186 ORTHO05D015971 3.5e-35 153.7 98 73.5
RcHm_v2.0_Chr5g0046871 Rosa chinensis HOM05D004186 ORTHO05D015971 8.0e-32 142.5 77 83.1
FAN17G2491 Fragaria x ananassa HOM05D004186 ORTHO05D006965 1.7e-29 134.8 90 77.8
RcHm_v2.0_Chr5g0036521 Rosa chinensis HOM05D004186 ORTHO05D015971 3.1e-28 130.6 77 79.2
TAR383G0623 Trochodendron aralioides HOM05D004186 ORTHO05D415797 9.4e-25 119.0 73 75.3
Zm00001eb101000 Zea mays HOM05D004186 ORTHO05D000030 4.1e-20 103.6 65 72.3
Zm00001eb265380 Zea mays HOM05D004186 ORTHO05D008381 2.6e-14 84.3 47 76.6
Sc14g0005990 Simmondsia chinensis HOM05D004186 ORTHO05D039000 1.3e-13 82.0 44 79.5
Zm00001eb140760 Zea mays HOM05D004186 ORTHO05D003061 2.4e-12 77.8 67 59.7
Zm00001eb349350 Zea mays HOM05D004186 ORTHO05D006965 2.4e-12 77.8 67 59.7
Ah.08g214930 Amaranthus hybridus HOM05D004186 ORTHO05D061406 7.0e-12 76.3 133 36.1
SalBow7G3706 Salvia bowleyana HOM05D004186 ORTHO05D352404 2.0e-11 74.7 64 67.2
EL10Ac2g04384 Beta vulgaris HOM05D004186 ORTHO05D039000 2.3e-10 71.2 35 82.9
Atru.chr3.336 Acer truncatum HOM05D004186 ORTHO05D006037 5.5e-09 66.6 38 84.2
C02p54480 Brassica napus HOM05D003206 ORTHO05D016781 6.1e-08 63.2 73 42.5
SGA_v2.0_scaffold66G22476 Striga asiatica HOM05D004186 ORTHO05D405288 8.0e-08 62.8 34 85.3


User provided reference genes

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