Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.Q671IP Arachis hypogaea HOM05D004931 ORTHO05D006579 7.7e-169 597.0 298 100.0
arahy.Tifrunner.gnm1.ann1.BF7HNV Arachis hypogaea HOM05D004931 ORTHO05D006579 1.7e-168 595.9 298 99.7
Glyma.15G065800 Glycine max HOM05D004931 ORTHO05D006579 1.2e-140 503.4 302 82.8
Glyma.13G248100 Glycine max HOM05D004931 ORTHO05D006579 1.5e-140 503.1 302 82.8
Lj6g0004184 Lotus japonicus HOM05D004931 ORTHO05D006579 9.8e-140 500.4 298 83.2
VMungo0540G0694 Vigna mungo HOM05D004931 ORTHO05D006579 9.8e-140 500.4 303 82.5
Medtr2g011420 Medicago truncatula HOM05D004931 ORTHO05D006579 8.3e-139 497.3 299 82.3
Ca_00224_v3 Cicer arietinum L. HOM05D004931 ORTHO05D006579 7.0e-138 494.2 296 81.8
Phvul.006G193900 Phaseolus vulgaris HOM05D004931 ORTHO05D006579 2.3e-136 489.2 304 81.2
TPR.G19613 Trifolium pratense HOM05D004931 ORTHO05D006579 8.6e-136 487.3 299 79.9
Psat1g210240 Pisum sativum HOM05D004931 ORTHO05D006579 8.1e-134 480.7 299 78.9
Prupe.1G215300 Prunus persica HOM05D004931 ORTHO05D006579 1.8e-133 479.6 303 79.2
Dinv06619 Davidia involucrata HOM05D004931 ORTHO05D006579 2.4e-130 469.2 303 77.2
CSS0024647 Camellia sinensis var. sinensis HOM05D004931 ORTHO05D006579 3.2e-130 468.8 303 76.6
FvH4_4g22670 Fragaria vesca HOM05D004931 ORTHO05D006579 6.0e-129 464.5 307 76.5
Gohir.A03G152300 Gossypium hirsutum HOM05D004931 ORTHO05D006579 3.0e-128 462.2 304 76.3
Cfa009447 Carpinus fangiana HOM05D004931 ORTHO05D006579 3.9e-128 461.8 303 76.6
CiPaw.05G101400 Carya illinoinensis HOM05D004931 ORTHO05D006579 6.6e-128 461.1 303 76.9
Actinidia34703 Actinidia chinensis HOM05D004931 ORTHO05D006579 1.1e-127 460.3 306 76.1
Manes.08G101500 Manihot esculenta HOM05D004931 ORTHO05D006579 1.1e-127 460.3 298 76.8
Gohir.D02G175400 Gossypium hirsutum HOM05D004931 ORTHO05D006579 1.5e-127 459.9 304 76.0
COL.COLO4_21767 Corchorus olitorius HOM05D004931 ORTHO05D006579 2.5e-127 459.1 304 76.0
Gorai.005G197000 Gossypium raimondii HOM05D004931 ORTHO05D006579 1.2e-126 456.8 304 75.7
Thecc.02G192700 Theobroma cacao HOM05D004931 ORTHO05D006579 2.8e-126 455.7 304 74.7
TAR622G0753 Trochodendron aralioides HOM05D004931 ORTHO05D006579 4.7e-126 454.9 303 74.9
Atru.chr12.1413 Acer truncatum HOM05D004931 ORTHO05D006579 6.2e-126 454.5 299 74.6
Haze_12500 Corylus avellana HOM05D004931 ORTHO05D006579 6.2e-126 454.5 304 75.7
Ciclev10005352m.g Citrus clementina HOM05D004931 ORTHO05D006579 1.4e-125 453.4 299 75.3
Cpa.g.sc38.82 Carica papaya HOM05D004931 ORTHO05D006579 5.2e-125 451.4 302 75.8
CANSAT01G2308 Cannabis sativa HOM05D004931 ORTHO05D006579 6.8e-125 451.1 302 74.2
QL03p049374 Quercus lobata HOM05D004931 ORTHO05D006579 8.9e-125 450.7 325 71.4
MD00G1177400 Malus domestica HOM05D004931 ORTHO05D006579 1.3e-123 446.8 268 82.5
TAR374G0634 Trochodendron aralioides HOM05D004931 ORTHO05D006579 1.7e-123 446.4 304 74.3
Nn3g16276 Nelumbo nucifera HOM05D004931 ORTHO05D006579 2.2e-123 446.0 305 73.8
CsaV3_4G002250 Cucumis sativus L. HOM05D004931 ORTHO05D006579 3.7e-123 445.3 303 72.6
TWI36G0173 Tripterygium wilfordii HOM05D004931 ORTHO05D006579 2.4e-122 442.6 304 73.4
MELO3C017814.2 Cucumis melo HOM05D004931 ORTHO05D006579 3.2e-122 442.2 303 71.9
Lj6A838G27 Lonicera japonica HOM05D004931 ORTHO05D006579 3.2e-122 442.2 339 68.4
AUR62005713 Chenopodium quinoa HOM05D004931 ORTHO05D006579 5.4e-122 441.4 283 76.0
Potri.003G162600 Populus trichocarpa HOM05D004931 ORTHO05D006579 5.4e-122 441.4 302 73.2
Sed0000722 Sechium edule HOM05D004931 ORTHO05D006579 7.1e-122 441.0 306 72.9
vmacro10419 Vaccinium macrocarpon HOM05D004931 ORTHO05D006579 2.7e-121 439.1 322 72.0
MD13G1130400 Malus domestica HOM05D004931 ORTHO05D006579 6.0e-121 438.0 276 79.3
Solyc04g045480.3 Solanum lycopersicum HOM05D004931 ORTHO05D006579 7.8e-121 437.6 302 70.9
GSVIVG01001087001 Vitis vinifera HOM05D004931 ORTHO05D006579 1.7e-120 436.4 306 71.9
Cc11_g15020 Coffea canephora HOM05D004931 ORTHO05D006579 2.3e-120 436.0 296 73.0
Migut.K01057 Erythranthe guttata HOM05D004931 ORTHO05D006579 5.1e-120 434.9 308 70.8
PGR102G0149 Punica granatum HOM05D004931 ORTHO05D006579 5.1e-120 434.9 305 70.5
Manes.09G188000 Manihot esculenta HOM05D004931 ORTHO05D006579 4.3e-119 431.8 299 72.2
PSO478G0594 Papaver somniferum HOM05D004931 ORTHO05D006579 4.3e-119 431.8 280 76.4
Duzib248G0794 Durio zibethinus HOM05D004931 ORTHO05D006579 5.6e-119 431.4 269 79.9
ECA238G3692 Erigeron canadensis HOM05D004931 ORTHO05D006579 5.6e-119 431.4 306 71.2
PSO017G2176 Papaver somniferum HOM05D004931 ORTHO05D006579 1.6e-118 429.9 280 75.7
Sopen04g017340 Solanum pennellii HOM05D004931 ORTHO05D006579 2.1e-118 429.5 283 72.4
HanXRQChr17g0559151 Helianthus annuus HOM05D004931 ORTHO05D006579 2.8e-118 429.1 289 74.7
Sc14g0009240 Simmondsia chinensis HOM05D004931 ORTHO05D006579 3.6e-118 428.7 298 70.8
MSTRG.455 Avicennia marina HOM05D004931 ORTHO05D006579 1.1e-117 427.2 301 70.1
Aqoxy5G03136 Aquilegia oxysepala HOM05D004931 ORTHO05D006579 3.1e-117 425.6 278 72.3
AUR62028841 Chenopodium quinoa HOM05D004931 ORTHO05D006579 1.2e-116 423.7 268 77.6
Lsat_1_v5_gn_2_17061 Lactuca sativa HOM05D004931 ORTHO05D006579 1.5e-116 423.3 303 71.0
FAN17G1056 Fragaria x ananassa HOM05D004931 ORTHO05D006579 2.6e-116 422.5 286 75.2
Potri.001G067400 Populus trichocarpa HOM05D004931 ORTHO05D006579 9.9e-116 420.6 274 76.6
Rhsim09G0128100 Rhododendron simsii HOM05D004931 ORTHO05D006579 1.3e-115 420.2 358 64.0
EL10Ac6g13609 Beta vulgaris HOM05D004931 ORTHO05D006579 1.1e-114 417.2 299 68.9
RcHm_v2.0_Chr4g0428911 Rosa chinensis HOM05D004931 ORTHO05D006579 1.1e-114 417.2 247 83.0
SGA_v2.0_scaffold80G25951 Striga asiatica HOM05D004931 ORTHO05D006579 1.6e-113 413.3 303 69.3
SGA_v2.0_scaffold81G25976 Striga asiatica HOM05D004931 ORTHO05D006579 6.0e-113 411.4 311 68.8
Carub.0001s2655 Capsella rubella HOM05D004931 ORTHO05D006579 7.8e-113 411.0 299 67.6
ClCG07G011910 Citrullus lanatus HOM05D004931 ORTHO05D006579 1.3e-112 410.2 307 69.1
AL1G41640 Arabidopsis lyrata HOM05D004931 ORTHO05D006579 1.7e-112 409.8 300 66.7
Sp1g24310 Schrenkiella parvula HOM05D004931 ORTHO05D006579 1.7e-112 409.8 301 67.1
Thhalv10008031m.g Eutrema salsugineum HOM05D004931 ORTHO05D006579 2.3e-112 409.5 301 66.1
SalBow2G3164 Salvia bowleyana HOM05D004931 ORTHO05D006579 1.9e-111 406.4 314 67.2
CARHR027590 Cardamine hirsuta HOM05D004931 ORTHO05D006579 9.6e-111 404.1 301 65.4
AT1G28120 Arabidopsis thaliana HOM05D004931 ORTHO05D006579 1.6e-110 403.3 301 66.1
CDE05G1203 Ceratophyllum demersum HOM05D004931 ORTHO05D006579 2.1e-110 402.9 280 70.4
THA.LOC104814207 Tarenaya hassleriana HOM05D004931 ORTHO05D006579 2.1e-110 402.9 303 65.3
BolC3t19725H Brassica oleracea HOM05D004931 ORTHO05D006579 3.6e-110 402.1 299 67.6
FAN07G1868 Fragaria x ananassa HOM05D004931 ORTHO05D006579 3.6e-110 402.1 298 70.8
unitig_8.g2895 Utricularia gibba HOM05D004931 ORTHO05D006579 8.1e-110 401.0 303 65.3
BcaC01g00008 Brassica carinata HOM05D004931 ORTHO05D006579 1.8e-109 399.8 299 66.9
CDE05G3195 Ceratophyllum demersum HOM05D004931 ORTHO05D006579 2.4e-109 399.4 280 69.6
Aa31sc45G20 Aethionema arabicum HOM05D004931 ORTHO05D006579 5.3e-109 398.3 305 66.6
BcaB03g12136 Brassica carinata HOM05D004931 ORTHO05D006579 6.9e-109 397.9 302 65.2
Nitab4.5_0007183g0010 Nicotiana tabacum HOM05D004931 ORTHO05D006579 9.9e-108 394.0 313 64.5
DCAR_024966 Daucus carota HOM05D004931 ORTHO05D006579 2.2e-107 392.9 304 67.1
HPP92_011736 Vanilla planifolia HOM05D004931 ORTHO05D006579 5.4e-106 388.3 299 66.2
Ah.02g131420 Amaranthus hybridus HOM05D004931 ORTHO05D006579 7.1e-106 387.9 280 68.2
C03p74760 Brassica napus HOM05D004931 ORTHO05D006579 2.1e-105 386.3 324 62.0
A08p25870 Brassica napus HOM05D004931 ORTHO05D006579 2.7e-105 386.0 324 62.0
BcaB03g13953 Brassica carinata HOM05D004931 ORTHO05D006579 1.3e-104 383.6 300 65.7
Os08g0537800 Oryza sativa ssp. japonica HOM05D004931 ORTHO05D006579 2.5e-103 379.4 262 70.2
FAN12G1488 Fragaria x ananassa HOM05D004931 ORTHO05D006579 9.6e-103 377.5 286 69.6
ATR0582G144 Amborella trichopoda HOM05D004931 ORTHO05D006579 8.1e-102 374.4 298 63.4
BraA08t34541Z Brassica rapa HOM05D004931 ORTHO05D006579 1.2e-100 370.5 324 60.8
MBI07_g35974_MAGBIO Magnolia biondii HOM05D004931 ORTHO05D006579 1.2e-100 370.5 280 67.9
SEGI_13679 Sequoiadendron giganteum HOM05D004931 ORTHO05D006579 2.1e-97 359.8 287 62.7
CAN.G465.9 Capsicum annuum HOM05D004931 ORTHO05D006579 1.3e-96 357.1 262 68.3
HPP92_011677 Vanilla planifolia HOM05D004931 ORTHO05D006579 2.3e-96 356.3 265 67.2
BolC7t42231H Brassica oleracea HOM05D004931 ORTHO05D006579 1.5e-95 353.6 297 61.3
C07p17280 Brassica napus HOM05D004931 ORTHO05D006579 7.4e-95 351.3 258 67.8
Mapoly0005s0248 Marchantia polymorpha HOM05D004931 ORTHO05D006579 6.2e-94 348.2 272 62.1
Peaxi162Scf00128g01757 Petunia axillaris HOM05D004931 ORTHO05D006579 6.2e-94 348.2 250 70.0
Hund26708 Selenicereus undatus HOM05D004931 ORTHO05D006579 1.1e-93 347.4 262 68.3
Nitab4.5_0001408g0040 Nicotiana tabacum HOM05D004931 ORTHO05D006579 2.6e-92 342.8 264 67.4
Lalb_Chr15g0090151 Lupinus albus HOM05D004931 ORTHO05D006579 4.5e-92 342.0 202 83.2
BcaC06g35334 Brassica carinata HOM05D004931 ORTHO05D006579 1.0e-91 340.9 297 59.6
Zm00001eb175560 Zea mays HOM05D004931 ORTHO05D006579 5.5e-90 335.1 261 64.8
SMO358G0085 Selaginella moellendorffii HOM05D004931 ORTHO05D006579 1.5e-87 327.0 248 62.9
AagrBONN_evm.TU.Sc2ySwM_368.2426 Anthoceros agrestis HOM05D004931 ORTHO05D006579 1.9e-87 326.6 248 64.9
Sabra01G0046800 Salix brachista HOM05D004931 ORTHO05D006579 1.3e-86 323.9 249 66.3
Actinidia31350 Actinidia chinensis HOM05D004931 ORTHO05D006579 4.8e-86 322.0 306 60.5
Pp3c5_2520 Physcomitrium patens HOM05D004931 ORTHO05D006579 3.1e-85 319.3 273 59.7
Dinv02758 Davidia involucrata HOM05D004931 ORTHO05D006579 1.9e-82 310.1 215 70.7
MBI10_g42797_MAGBIO Magnolia biondii HOM05D004931 ORTHO05D006579 4.2e-82 308.9 269 59.9
Duzib132G0410 Durio zibethinus HOM05D004931 ORTHO05D006579 8.7e-80 301.2 257 61.5
Sed0016914 Sechium edule HOM05D004931 ORTHO05D006579 1.1e-79 300.8 215 70.7
AagrBONN_evm.TU.Sc2ySwM_26.3 Anthoceros agrestis HOM05D004931 ORTHO05D006579 1.5e-79 300.4 225 66.2
Pp3c6_24540 Physcomitrium patens HOM05D004931 ORTHO05D006579 8.2e-78 294.7 248 60.1
PSO832G0491 Papaver somniferum HOM05D004931 ORTHO05D006579 2.6e-68 263.1 219 63.5
Cre10.g441500 Chlamydomonas reinhardtii HOM05D004931 ORTHO05D006579 4.5e-60 235.7 281 44.1
A07p11470 Brassica napus HOM05D004931 ORTHO05D006579 6.5e-59 231.9 297 45.1
BraA07t28936Z Brassica rapa HOM05D004931 ORTHO05D006579 1.8e-56 223.8 254 49.2
Lalb_Chr18g0060061 Lupinus albus HOM05D004931 ORTHO05D006579 3.1e-53 213.0 120 85.8
Eucgr.B03557 Eucalyptus grandis HOM05D004931 ORTHO05D006579 3.0e-48 196.4 121 80.2
PGSC0003DMG402006689 Solanum tuberosum HOM05D004931 ORTHO05D006579 2.6e-47 193.4 120 75.8
PRCOL_00001027 Prasinoderma coloniale HOM05D004931 ORTHO05D006579 5.9e-44 182.2 264 40.2
PGSC0003DMG401006689 Solanum tuberosum HOM05D004931 ORTHO05D006579 7.7e-44 181.8 146 63.7
Haze_27431 Corylus avellana HOM05D004931 ORTHO05D006579 1.7e-43 180.6 270 39.6
PSO170G5257 Papaver somniferum HOM05D004650 ORTHO05D005715 2.7e-36 156.8 118 66.1
CBR_g45420 Chara braunii HOM05D000019 ORTHO05D000048 2.9e-35 153.3 149 57.0
TPR.G382 Trifolium pratense HOM05D004931 ORTHO05D006579 3.8e-35 152.9 86 80.2
TPR.G19900 Trifolium pratense HOM05D004931 ORTHO05D006579 1.4e-32 144.4 108 66.7
RcHm_v2.0_Chr7g0205601 Rosa chinensis HOM05D004931 ORTHO05D006579 1.5e-31 141.0 88 75.0
Sc17g0004710 Simmondsia chinensis HOM05D004931 ORTHO05D006579 4.9e-30 136.0 91 72.5
Zm00001eb406040 Zea mays HOM05D004931 ORTHO05D006579 4.0e-24 116.3 287 27.9
TPR.G399 Trifolium pratense HOM05D004931 ORTHO05D006579 2.9e-22 110.2 105 54.3
Os04g0652600 Oryza sativa ssp. japonica HOM05D004931 ORTHO05D299584 5.4e-21 105.9 317 27.4
ECA238G1930 Erigeron canadensis HOM05D000406 ORTHO05D006918 1.6e-20 104.4 75 68.0
Os02g0521600 Oryza sativa ssp. japonica HOM05D004931 ORTHO05D037234 2.3e-19 100.5 256 30.9
Zm00001eb242070 Zea mays HOM05D004931 ORTHO05D037234 3.9e-19 99.8 304 28.9
TPR.G27432 Trifolium pratense HOM05D004931 ORTHO05D006579 1.6e-17 94.4 81 60.5
Zm00001eb406050 Zea mays HOM05D004931 ORTHO05D444756 4.7e-17 92.8 209 27.3
Zm00001eb037020 Zea mays HOM05D004931 ORTHO05D006579 1.1e-16 91.7 61 65.6
FAN01G2784 Fragaria x ananassa HOM05D005362 ORTHO05D006895 1.5e-15 87.8 149 39.6
Cre06.g253755 Chlamydomonas reinhardtii HOM05D018811 ORTHO05D145199 1.4e-13 81.3 308 24.0
Cre06.g253459 Chlamydomonas reinhardtii HOM05D018811 ORTHO05D146359 1.9e-13 80.9 308 24.0
Lalb_Chr18g0060051 Lupinus albus HOM05D004931 ORTHO05D006579 4.1e-13 79.7 47 76.6
BolC2t10441H Brassica oleracea HOM05D004931 ORTHO05D027277 9.2e-13 78.6 93 46.2
C01p27720 Brassica napus HOM05D004931 ORTHO05D027277 5.1e-11 72.8 87 43.7
Solyc03g059395.1 Solanum lycopersicum HOM05D004931 ORTHO05D006579 5.6e-10 69.3 51 62.7
Os02g0513800 Oryza sativa ssp. japonica HOM05D023198 ORTHO05D294263 2.3e-08 63.9 231 23.4
BcaB03g12135 Brassica carinata HOM05D004931 ORTHO05D006579 4.0e-08 63.2 75 42.7
BcaC03g16580 Brassica carinata HOM05D004931 ORTHO05D027277 2.0e-07 60.8 63 54.0
Sopen03g014100 Solanum pennellii HOM05D004931 ORTHO05D006579 6.4e-06 55.8 41 63.4


User provided reference genes

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