Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.PY7Z8Y Arachis hypogaea HOM05D001195 ORTHO05D019475 1.2e-161 573.2 304 100.0
arahy.Tifrunner.gnm1.ann1.GAN3W4 Arachis hypogaea HOM05D001195 ORTHO05D001138 1.6e-108 396.7 240 90.8
arahy.Tifrunner.gnm1.ann1.T4R6KE Arachis hypogaea HOM05D001195 ORTHO05D019475 2.1e-105 386.3 286 75.2
arahy.Tifrunner.gnm1.ann1.IYN8K7 Arachis hypogaea HOM05D001195 ORTHO05D019475 6.1e-105 384.8 310 72.6
arahy.Tifrunner.gnm1.ann1.62B5VH Arachis hypogaea HOM05D001195 ORTHO05D019475 2.1e-89 333.2 286 68.9
Glyma.13G226500 Glycine max HOM05D001195 ORTHO05D001138 2.7e-84 316.2 249 70.7
Glyma.15G085900 Glycine max HOM05D001195 ORTHO05D001138 6.2e-81 305.1 249 68.3
Phvul.006G172900 Phaseolus vulgaris HOM05D001195 ORTHO05D001138 2.9e-78 296.2 249 67.1
VMungo0540G0601 Vigna mungo HOM05D001195 ORTHO05D001138 8.3e-78 294.7 249 66.7
Lalb_Chr15g0086351 Lupinus albus HOM05D001195 ORTHO05D001138 1.5e-71 273.9 249 61.8
Medtr2g017980 Medicago truncatula HOM05D001195 ORTHO05D001138 7.6e-71 271.6 240 63.3
Lalb_Chr18g0054791 Lupinus albus HOM05D001195 ORTHO05D001138 2.7e-68 263.1 250 61.2
TPR.G4468 Trifolium pratense HOM05D001195 ORTHO05D001138 2.7e-68 263.1 245 62.4
Lj6g0025795 Lotus japonicus HOM05D001195 ORTHO05D001138 3.6e-65 252.7 228 61.8
Ca_00474_v3 Cicer arietinum L. HOM05D001195 ORTHO05D001138 7.3e-58 228.4 248 57.7
Psat1g194560 Pisum sativum HOM05D001195 ORTHO05D001138 2.4e-56 223.4 244 57.0
Cfa001104 Carpinus fangiana HOM05D001195 ORTHO05D001138 1.1e-53 214.5 251 53.0
Prupe.4G067700 Prunus persica HOM05D001195 ORTHO05D001138 2.4e-53 213.4 225 52.9
Haze_05390 Corylus avellana HOM05D001195 ORTHO05D001138 1.8e-51 207.2 251 51.4
QL05p050035 Quercus lobata HOM05D001195 ORTHO05D001138 3.0e-51 206.5 246 52.4
CANSAT35G1100 Cannabis sativa HOM05D001195 ORTHO05D001138 5.1e-51 205.7 246 53.3
CiPaw.09G136800 Carya illinoinensis HOM05D001195 ORTHO05D001138 2.5e-50 203.4 246 50.0
Potri.004G061700 Populus trichocarpa HOM05D001195 ORTHO05D001138 6.9e-48 195.3 248 48.4
Atru.chr10.1552 Acer truncatum HOM05D001195 ORTHO05D001138 1.7e-46 190.7 256 48.4
Gorai.011G036600 Gossypium raimondii HOM05D001195 ORTHO05D001138 2.2e-46 190.3 241 52.7
MD10G1274700 Malus domestica HOM05D001195 ORTHO05D001138 2.5e-45 186.8 224 50.9
Gohir.D10G034800 Gossypium hirsutum HOM05D001195 ORTHO05D001138 3.2e-45 186.4 240 51.7
COL.COLO4_31221 Corchorus olitorius HOM05D001195 ORTHO05D001138 4.2e-45 186.0 257 50.2
Thecc.06G164600 Theobroma cacao HOM05D001195 ORTHO05D001138 9.3e-45 184.9 270 48.5
Gohir.A10G034100 Gossypium hirsutum HOM05D001195 ORTHO05D001138 1.6e-44 184.1 240 51.2
RcHm_v2.0_Chr5g0011921 Rosa chinensis HOM05D001195 ORTHO05D001138 2.1e-44 183.7 226 50.4
FAN16G0685 Fragaria x ananassa HOM05D001195 ORTHO05D001138 6.0e-44 182.2 293 42.7
MD00G1008200 Malus domestica HOM05D001195 ORTHO05D001138 7.9e-44 181.8 221 50.7
Actinidia35607 Actinidia chinensis HOM05D001195 ORTHO05D001138 3.0e-43 179.9 269 45.0
TAR626G1395 Trochodendron aralioides HOM05D001195 ORTHO05D001138 3.0e-43 179.9 258 46.9
Manes.17G059900 Manihot esculenta HOM05D001195 ORTHO05D001138 6.7e-43 178.7 249 47.0
Duzib235G0195 Durio zibethinus HOM05D001195 ORTHO05D001138 8.7e-43 178.3 275 46.9
Duzib160G0611 Durio zibethinus HOM05D001195 ORTHO05D001138 4.3e-42 176.0 255 47.5
GSVIVG01021264001 Vitis vinifera HOM05D001195 ORTHO05D001138 4.3e-42 176.0 243 48.1
Eucgr.D00435 Eucalyptus grandis HOM05D001195 ORTHO05D001138 5.7e-42 175.6 239 45.6
Potri.011G071300 Populus trichocarpa HOM05D001195 ORTHO05D001138 7.4e-42 175.3 248 46.8
Duzib192G1074 Durio zibethinus HOM05D001195 ORTHO05D001138 9.6e-42 174.9 271 46.9
Manes.16G042500 Manihot esculenta HOM05D001195 ORTHO05D001138 9.6e-42 174.9 246 46.3
AUR62039487 Chenopodium quinoa HOM05D001195 ORTHO05D001138 2.1e-41 173.7 291 40.5
ClCG01G023950 Citrullus lanatus HOM05D001195 ORTHO05D001138 8.2e-41 171.8 245 45.3
PGSC0003DMG400028463 Solanum tuberosum HOM05D001195 ORTHO05D001138 8.2e-41 171.8 245 47.3
CSS0006950 Camellia sinensis var. sinensis HOM05D001195 ORTHO05D001138 1.1e-40 171.4 270 44.8
CSS0029612 Camellia sinensis var. sinensis HOM05D001195 ORTHO05D001138 1.1e-40 171.4 270 44.8
Dinv12743 Davidia involucrata HOM05D001195 ORTHO05D001138 3.1e-40 169.9 269 43.1
Sopen02g021050 Solanum pennellii HOM05D001195 ORTHO05D001138 6.9e-40 168.7 245 48.6
Cpa.g.sc7.115 Carica papaya HOM05D001195 ORTHO05D001138 1.5e-39 167.5 261 44.1
vmacro04000 Vaccinium macrocarpon HOM05D001195 ORTHO05D001138 1.5e-39 167.5 271 42.4
MELO3C007194.2 Cucumis melo HOM05D001195 ORTHO05D001138 2.6e-39 166.8 245 45.3
Rhsim13G0187200 Rhododendron simsii HOM05D001195 ORTHO05D001138 2.6e-39 166.8 268 43.7
Solyc02g072090.2 Solanum lycopersicum HOM05D001195 ORTHO05D001138 2.6e-39 166.8 245 48.2
TAR624G1016 Trochodendron aralioides HOM05D001195 ORTHO05D001138 2.6e-39 166.8 273 42.5
MBI07_g00451_MAGBIO Magnolia biondii HOM05D001195 ORTHO05D001138 4.5e-39 166.0 266 42.9
CAN.G411.42 Capsicum annuum HOM05D001195 ORTHO05D001138 7.6e-39 165.2 276 44.6
AUR62041813 Chenopodium quinoa HOM05D001195 ORTHO05D001138 1.0e-38 164.9 235 45.5
Nn6g34481 Nelumbo nucifera HOM05D001195 ORTHO05D001138 1.0e-38 164.9 271 42.1
Ciclev10014075m.g Citrus clementina HOM05D001195 ORTHO05D001138 1.3e-38 164.5 306 40.2
CsaV3_6G051090 Cucumis sativus L. HOM05D001195 ORTHO05D001138 5.0e-38 162.5 245 44.9
CSS0009860 Camellia sinensis var. sinensis HOM05D001195 ORTHO05D001138 6.5e-38 162.2 259 43.6
FvH4_3g07230 Fragaria vesca HOM05D001195 ORTHO05D001138 6.5e-38 162.2 220 46.8
FAN11G0143 Fragaria x ananassa HOM05D001195 ORTHO05D001138 6.5e-38 162.2 220 46.8
Sed0022889 Sechium edule HOM05D001195 ORTHO05D001138 6.5e-38 162.2 245 44.5
arahy.Tifrunner.gnm1.ann1.X8EK17 Arachis hypogaea HOM05D001195 ORTHO05D019475 8.4e-38 161.8 102 86.3
CSS0020747 Camellia sinensis var. sinensis HOM05D001195 ORTHO05D001138 1.4e-37 161.0 259 43.6
Cc02_g15690 Coffea canephora HOM05D001195 ORTHO05D001138 1.9e-37 160.6 262 42.7
Nitab4.5_0000437g0030 Nicotiana tabacum HOM05D001195 ORTHO05D001138 1.9e-37 160.6 276 43.5
Actinidia39524 Actinidia chinensis HOM05D001195 ORTHO05D001138 2.5e-37 160.2 263 42.6
FAN21G1686 Fragaria x ananassa HOM05D001195 ORTHO05D001138 2.5e-37 160.2 220 46.4
Nitab4.5_0006070g0030 Nicotiana tabacum HOM05D001195 ORTHO05D001138 2.5e-37 160.2 260 46.2
Peaxi162Scf00112g00048 Petunia axillaris HOM05D001195 ORTHO05D001138 4.2e-37 159.5 268 44.8
Sed0001864 Sechium edule HOM05D001195 ORTHO05D001138 4.2e-37 159.5 247 44.1
Lj2A317G40 Lonicera japonica HOM05D001195 ORTHO05D001138 5.5e-37 159.1 292 40.4
Oeu040926.1 Olea europaea HOM05D001195 ORTHO05D001138 5.5e-37 159.1 249 46.2
Nn3g21089 Nelumbo nucifera HOM05D001195 ORTHO05D001138 9.3e-37 158.3 275 40.4
TWI09G0472 Tripterygium wilfordii HOM05D001195 ORTHO05D001138 2.1e-36 157.1 254 43.7
FAN25G2492 Fragaria x ananassa HOM05D001195 ORTHO05D001138 2.7e-36 156.8 220 45.9
Aqoxy4G00234 Aquilegia oxysepala HOM05D001195 ORTHO05D001138 4.6e-36 156.0 248 41.1
Sabra11G0055900 Salix brachista HOM05D001195 ORTHO05D001138 1.0e-35 154.8 277 40.4
Sabra11G0059000 Salix brachista HOM05D001195 ORTHO05D001138 1.0e-35 154.8 277 40.4
EL10Ac8g19988 Beta vulgaris HOM05D001195 ORTHO05D001138 6.7e-35 152.1 237 44.7
Sc05g0006830 Simmondsia chinensis HOM05D001195 ORTHO05D001138 6.7e-35 152.1 235 42.1
Gohir.D06G206500 Gossypium hirsutum HOM05D001195 ORTHO05D001138 1.1e-34 151.4 263 41.8
PGR031G3259 Punica granatum HOM05D001195 ORTHO05D001138 1.9e-34 150.6 232 44.0
Gorai.010G240900 Gossypium raimondii HOM05D001195 ORTHO05D001138 2.5e-34 150.2 242 41.3
SalBow7G4755 Salvia bowleyana HOM05D001195 ORTHO05D001138 5.7e-34 149.1 228 45.2
Sp7g17530 Schrenkiella parvula HOM05D001195 ORTHO05D001138 9.7e-34 148.3 244 42.2
TWI53G0488 Tripterygium wilfordii HOM05D001195 ORTHO05D001138 1.3e-33 147.9 227 43.6
SalBow7G4630 Salvia bowleyana HOM05D001195 ORTHO05D001138 2.8e-33 146.7 229 44.1
THA.LOC104798436 Tarenaya hassleriana HOM05D001195 ORTHO05D001138 2.8e-33 146.7 237 43.9
Gohir.A06G199200 Gossypium hirsutum HOM05D001195 ORTHO05D001138 3.7e-33 146.4 263 39.9
AT4G18820 Arabidopsis thaliana HOM05D001195 ORTHO05D001138 4.8e-33 146.0 235 42.1
MSTRG.13236 Avicennia marina HOM05D001195 ORTHO05D001138 8.2e-33 145.2 252 42.1
Migut.H01406 Erythranthe guttata HOM05D001195 ORTHO05D001138 1.1e-32 144.8 215 44.7
C01p12860 Brassica napus HOM05D001195 ORTHO05D001138 4.1e-32 142.9 215 44.2
Gohir.D09G074700 Gossypium hirsutum HOM05D001195 ORTHO05D001138 4.1e-32 142.9 245 41.2
DCAR_005162 Daucus carota HOM05D001195 ORTHO05D001138 6.9e-32 142.1 272 37.9
Lsat_1_v5_gn_4_48381 Lactuca sativa HOM05D001195 ORTHO05D001138 6.9e-32 142.1 240 42.5
DCAR_027972 Daucus carota HOM05D001195 ORTHO05D001138 1.5e-31 141.0 248 39.9
Gorai.006G089800 Gossypium raimondii HOM05D001195 ORTHO05D001138 1.5e-31 141.0 249 41.0
PSO170G2433 Papaver somniferum HOM05D001195 ORTHO05D001138 3.4e-31 139.8 288 36.8
Hund21450 Selenicereus undatus HOM05D001195 ORTHO05D001138 4.5e-31 139.4 240 41.7
Lj1A1176T61 Lonicera japonica HOM05D001195 ORTHO05D001138 5.9e-31 139.0 221 44.3
ECA234G3008 Erigeron canadensis HOM05D001195 ORTHO05D001138 1.0e-30 138.3 235 43.8
Gohir.A09G074900 Gossypium hirsutum HOM05D001195 ORTHO05D001138 2.2e-30 137.1 249 41.0
SGA_v2.0_scaffold106G30604 Striga asiatica HOM05D001195 ORTHO05D001138 3.8e-30 136.3 233 41.6
CARHR225680 Cardamine hirsuta HOM05D001195 ORTHO05D001138 2.5e-29 133.7 242 38.4
Dinv32331 Davidia involucrata HOM05D001195 ORTHO05D001138 2.5e-29 133.7 223 43.5
Actinidia07653 Actinidia chinensis HOM05D001195 ORTHO05D019475 4.2e-29 132.9 118 55.9
MBI06_g18694_MAGBIO Magnolia biondii HOM05D000215 ORTHO05D002239 4.2e-29 132.9 253 37.2
HanXRQChr17g0556931 Helianthus annuus HOM05D001195 ORTHO05D001138 5.5e-29 132.5 227 41.4
Aa31LG6G1530 Aethionema arabicum HOM05D001195 ORTHO05D001138 9.4e-29 131.7 266 36.8
AL7G35420 Arabidopsis lyrata HOM05D001195 ORTHO05D001138 1.2e-28 131.3 238 39.5
Carub.0007s2241 Capsella rubella HOM05D001195 ORTHO05D001138 1.6e-28 131.0 235 38.3
BcaNung04862 Brassica carinata HOM05D001195 ORTHO05D001138 7.9e-28 128.6 215 41.4
ATR0012G006 Amborella trichopoda HOM05D001195 ORTHO05D001138 1.8e-27 127.5 261 35.6
BcaC09g51447 Brassica carinata HOM05D001195 ORTHO05D001138 6.7e-27 125.6 215 40.5
A01p10850 Brassica napus HOM05D001195 ORTHO05D001138 6.7e-27 125.6 215 40.5
BolC1t01262H Brassica oleracea HOM05D001195 ORTHO05D001138 6.7e-27 125.6 215 40.5
BraA01t01032Z Brassica rapa HOM05D001195 ORTHO05D001138 6.7e-27 125.6 215 40.5
Aa31LG9G7340 Aethionema arabicum HOM05D001195 ORTHO05D001138 1.1e-26 124.8 217 41.0
CiPaw.10G103700 Carya illinoinensis HOM05D001195 ORTHO05D001138 1.5e-26 124.4 194 45.4
Thhalv10024266m.g Eutrema salsugineum HOM05D001195 ORTHO05D001138 1.5e-26 124.4 237 38.4
CARHR176250 Cardamine hirsuta HOM05D001195 ORTHO05D001138 1.7e-25 120.9 212 41.0
Sp2g10610 Schrenkiella parvula HOM05D001195 ORTHO05D001138 6.3e-25 119.0 215 38.6
AT5G45720 Arabidopsis thaliana HOM05D001195 ORTHO05D001138 2.4e-24 117.1 233 36.5
Carub.0008s0227 Capsella rubella HOM05D001195 ORTHO05D001138 6.9e-24 115.5 214 38.8
SalBow8G2953 Salvia bowleyana HOM05D001195 ORTHO05D001138 9.1e-24 115.2 204 42.6
AL8G12920 Arabidopsis lyrata HOM05D001195 ORTHO05D001138 4.5e-23 112.8 234 37.2
HPP92_022985 Vanilla planifolia HOM05D001195 ORTHO05D001138 5.9e-23 112.5 252 35.3
Thhalv10000763m.g Eutrema salsugineum HOM05D001195 ORTHO05D001138 1.0e-22 111.7 215 35.8
BraA09t37792Z Brassica rapa HOM05D001195 ORTHO05D001138 8.5e-22 108.6 113 47.8
BcaC04g21747 Brassica carinata HOM05D001195 ORTHO05D001138 1.1e-21 108.2 115 47.8
A09p21890 Brassica napus HOM05D001195 ORTHO05D001138 1.9e-21 107.5 113 47.8
BcaC06g31521 Brassica carinata HOM05D001195 ORTHO05D001138 2.5e-21 107.1 214 36.4
BcaB07g30871 Brassica carinata HOM05D001195 ORTHO05D001138 1.6e-20 104.4 140 41.4
C09p28060 Brassica napus HOM05D001195 ORTHO05D001138 3.6e-20 103.2 190 35.3
BolC9t55673H Brassica oleracea HOM05D001195 ORTHO05D001138 3.6e-20 103.2 190 35.3
A06p46420 Brassica napus HOM05D001195 ORTHO05D001138 4.7e-20 102.8 144 43.1
BraA06t27506Z Brassica rapa HOM05D001195 ORTHO05D001138 4.7e-20 102.8 144 43.1
CDE02G3728 Ceratophyllum demersum HOM05D001195 ORTHO05D001138 4.7e-20 102.8 228 37.7
BcaC06g34409 Brassica carinata HOM05D001195 ORTHO05D001138 6.1e-20 102.4 144 42.4
C07p29000 Brassica napus HOM05D001195 ORTHO05D001138 6.1e-20 102.4 144 42.4
BolC7t43439H Brassica oleracea HOM05D001195 ORTHO05D001138 6.1e-20 102.4 144 42.4
Hma1.2p1_0508F.1_g168710 Hydrangea macrophylla HOM05D001195 ORTHO05D001138 1.0e-19 101.7 170 41.2
unitig_749.g13668 Utricularia gibba HOM05D001195 ORTHO05D001138 3.9e-19 99.8 230 34.8
Os05g0529600 Oryza sativa ssp. japonica HOM05D001195 ORTHO05D001138 2.6e-18 97.1 254 35.8
Zm00001eb293320 Zea mays HOM05D001195 ORTHO05D001138 2.6e-18 97.1 238 34.9
Zm00001eb154140 Zea mays HOM05D001195 ORTHO05D001138 7.4e-18 95.5 235 36.6
Zm00001eb361980 Zea mays HOM05D001195 ORTHO05D001138 2.2e-17 94.0 250 34.8
CDE04G2419 Ceratophyllum demersum HOM05D001195 ORTHO05D001138 2.4e-16 90.5 277 29.2
A01p10490 Brassica napus HOM05D001195 ORTHO05D001138 9.1e-16 88.6 75 60.0
Oeu043121.2 Olea europaea HOM05D001195 ORTHO05D001138 5.9e-15 85.9 213 37.1
unitig_749.g13667 Utricularia gibba HOM05D001195 ORTHO05D001138 1.0e-14 85.1 220 30.9
Lalb_Chr21g0313581 Lupinus albus HOM05D001195 ORTHO05D029068 3.6e-12 76.6 77 54.5
QL02p056630 Quercus lobata HOM05D001195 ORTHO05D019475 3.6e-12 76.6 63 60.3
CiPaw.10G103800 Carya illinoinensis HOM05D001195 ORTHO05D001138 5.3e-08 62.8 44 63.6
ATR0605G234 Amborella trichopoda HOM05D001195 ORTHO05D012394 8.5e-06 55.5 169 29.0


User provided reference genes

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