Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.PXC5PH Arachis hypogaea HOM05D007700 ORTHO05D009669 4.0e-151 538.9 476 100.0
arahy.Tifrunner.gnm1.ann1.HE2L98 Arachis hypogaea HOM05D007700 ORTHO05D009669 2.6e-142 509.6 476 97.5
Lj3g0022870 Lotus japonicus HOM05D007700 ORTHO05D009669 2.0e-94 350.5 274 67.9
Ca_23118_v3 Cicer arietinum L. HOM05D007700 ORTHO05D009669 6.9e-87 325.5 271 63.8
Psat4g208920 Pisum sativum HOM05D007700 ORTHO05D009669 3.9e-82 309.7 272 62.5
Glyma.07G109000 Glycine max HOM05D007700 ORTHO05D009669 6.7e-82 308.9 274 62.0
Thecc.01G008500 Theobroma cacao HOM05D007700 ORTHO05D009669 1.9e-81 307.4 271 62.0
VMungo0331G0753 Vigna mungo HOM05D007700 ORTHO05D009669 2.4e-79 300.4 272 62.5
CANSAT25G3310 Cannabis sativa HOM05D007700 ORTHO05D009669 1.5e-78 297.7 272 60.3
Eucgr.I02272 Eucalyptus grandis HOM05D007700 ORTHO05D009669 1.6e-75 287.7 280 58.6
Medtr8g005870 Medicago truncatula HOM05D007700 ORTHO05D009669 8.8e-74 282.0 278 57.9
TPR.G28737 Trifolium pratense HOM05D007700 ORTHO05D009669 2.6e-73 280.4 271 58.3
QL06p052538 Quercus lobata HOM05D007700 ORTHO05D009669 3.7e-72 276.6 276 55.8
Actinidia22918 Actinidia chinensis HOM05D007700 ORTHO05D009669 1.8e-71 274.2 276 55.1
Cfa007052 Carpinus fangiana HOM05D007700 ORTHO05D009669 5.3e-71 272.7 282 54.6
Gohir.D03G003800 Gossypium hirsutum HOM05D007700 ORTHO05D009669 5.3e-71 272.7 270 55.6
Haze_03682 Corylus avellana HOM05D006745 ORTHO05D008449 9.1e-71 271.9 278 55.4
Gorai.003G004000 Gossypium raimondii HOM05D007700 ORTHO05D009669 4.5e-70 269.6 270 55.9
Nn6g31772 Nelumbo nucifera HOM05D007700 ORTHO05D009669 1.1e-68 265.0 284 54.2
Potri.005G103300 Populus trichocarpa HOM05D007700 ORTHO05D009669 7.9e-67 258.8 272 55.5
Atru.chr3.942 Acer truncatum HOM05D007700 ORTHO05D009669 1.0e-66 258.5 273 52.4
ClCG01G020760 Citrullus lanatus HOM05D007700 ORTHO05D009669 3.0e-66 256.9 273 55.7
Sabra05G0085500 Salix brachista HOM05D007700 ORTHO05D009669 2.0e-65 254.2 274 54.0
Sopen02g027760 Solanum pennellii HOM05D007700 ORTHO05D009669 2.0e-65 254.2 273 52.7
CiPaw.07G004600 Carya illinoinensis HOM05D007700 ORTHO05D009669 3.3e-65 253.4 273 52.4
MELO3C007960.2 Cucumis melo HOM05D007700 ORTHO05D009669 3.3e-65 253.4 271 55.7
Lj2P490T20 Lonicera japonica HOM05D007700 ORTHO05D009669 3.3e-65 253.4 277 53.8
PGSC0003DMG400040241 Solanum tuberosum HOM05D007700 ORTHO05D009669 4.4e-65 253.1 273 52.4
Phvul.010G056500 Phaseolus vulgaris HOM05D007700 ORTHO05D009669 2.2e-64 250.8 275 53.8
Manes.01G153300 Manihot esculenta HOM05D007700 ORTHO05D009669 1.8e-63 247.7 275 53.5
Thhalv10022683m.g Eutrema salsugineum HOM05D007700 ORTHO05D009669 9.1e-63 245.4 273 51.6
Sed0015131 Sechium edule HOM05D000242 ORTHO05D009669 7.7e-62 242.3 256 55.9
Aa31LG8G14930 Aethionema arabicum HOM05D007700 ORTHO05D009669 3.8e-61 240.0 272 49.6
AL3G50640 Arabidopsis lyrata HOM05D007700 ORTHO05D009669 3.8e-61 240.0 270 50.4
Rhsim10G0201800 Rhododendron simsii HOM05D000242 ORTHO05D009669 3.8e-61 240.0 217 55.8
Rhsim10G0203000 Rhododendron simsii HOM05D000242 ORTHO05D009669 6.5e-61 239.2 210 56.2
AT2G17670 Arabidopsis thaliana HOM05D007700 ORTHO05D009669 1.5e-60 238.0 271 50.6
Dinv40165 Davidia involucrata HOM05D007700 ORTHO05D009669 7.2e-60 235.7 282 49.3
Ciclev10025555m.g Citrus clementina HOM05D007700 ORTHO05D009669 6.1e-59 232.6 270 49.6
Sp3g31020 Schrenkiella parvula HOM05D007700 ORTHO05D009669 1.0e-58 231.9 270 51.1
vmacro20514 Vaccinium macrocarpon HOM05D007700 ORTHO05D009669 1.2e-57 228.4 276 47.5
THA.LOC104804288 Tarenaya hassleriana HOM05D007700 ORTHO05D009669 4.4e-57 226.5 271 48.7
PGR119G0746 Punica granatum HOM05D007700 ORTHO05D009669 9.7e-57 225.3 276 48.2
Cc00_g14260 Coffea canephora HOM05D007700 ORTHO05D009669 2.8e-56 223.8 278 48.2
DCAR_023138 Daucus carota HOM05D007700 ORTHO05D009669 2.8e-56 223.8 211 56.4
BolC9t54240H Brassica oleracea HOM05D007700 ORTHO05D009669 1.8e-55 221.1 274 47.4
C09p13500 Brassica napus HOM05D007700 ORTHO05D009669 2.4e-55 220.7 274 47.1
TAR625G0909 Trochodendron aralioides HOM05D007700 ORTHO05D009669 5.3e-55 219.5 284 46.8
CsaV3_6G047710 Cucumis sativus L. HOM05D007700 ORTHO05D009669 1.2e-54 218.4 274 49.3
BraA09t36788Z Brassica rapa HOM05D007700 ORTHO05D009669 2.0e-54 217.6 271 46.9
Solyc02g082970.1 Solanum lycopersicum HOM05D007700 ORTHO05D009669 5.9e-54 216.1 274 46.7
A09p11480 Brassica napus HOM05D007700 ORTHO05D009669 5.0e-53 213.0 271 46.5
Prupe.7G178400 Prunus persica HOM05D007700 ORTHO05D009669 1.9e-52 211.1 275 46.2
BcaB07g31715 Brassica carinata HOM05D007700 ORTHO05D009669 9.4e-52 208.8 271 45.4
Carub.0003s3177 Capsella rubella HOM05D007700 ORTHO05D009669 2.6e-49 200.7 242 46.3
Lalb_Chr03g0039951 Lupinus albus HOM05D007700 ORTHO05D009669 9.8e-49 198.7 274 47.1
HanXRQChr07g0192051 Helianthus annuus HOM05D007700 ORTHO05D009669 8.3e-48 195.7 281 42.3
Dinv08534 Davidia involucrata HOM05D007700 ORTHO05D009669 1.6e-46 191.4 154 61.7
MBI05_g43154_MAGBIO Magnolia biondii HOM05D007700 ORTHO05D009669 1.6e-46 191.4 275 43.3
HPP92_025432 Vanilla planifolia HOM05D007700 ORTHO05D009669 5.9e-46 189.5 281 44.5
Gohir.A02G176100 Gossypium hirsutum HOM05D007700 ORTHO05D009669 2.9e-45 187.2 153 61.4
MD02G1120600 Malus domestica HOM05D007700 ORTHO05D009669 1.1e-44 185.3 275 41.1
COL.COLO4_22522 Corchorus olitorius HOM05D007700 ORTHO05D009669 1.0e-42 178.7 270 43.0
CDE05G1147 Ceratophyllum demersum HOM05D007700 ORTHO05D009669 6.8e-42 176.0 256 41.0
SGA_v2.0_scaffold275G46573 Striga asiatica HOM05D007700 ORTHO05D009669 1.1e-39 168.7 246 43.5
CARHR107900 Cardamine hirsuta HOM05D007700 ORTHO05D009669 4.1e-39 166.8 234 47.0
Lsat_1_v5_gn_2_74520 Lactuca sativa HOM05D007700 ORTHO05D009669 1.2e-38 165.2 283 39.9
Peaxi162Scf01310g10029 Petunia axillaris HOM05D007700 ORTHO05D009669 1.6e-38 164.9 274 40.1
Migut.C00922 Erythranthe guttata HOM05D007700 ORTHO05D009669 5.9e-38 162.9 247 42.1
SalBow7G3569 Salvia bowleyana HOM05D007700 ORTHO05D009669 2.3e-37 161.0 247 40.9
FAN23G0395 Fragaria x ananassa HOM05D007700 ORTHO05D009669 1.5e-36 158.3 203 47.8
TWI73G0108 Tripterygium wilfordii HOM05D007700 ORTHO05D009669 1.5e-36 158.3 204 47.1
FvH4_1g10671 Fragaria vesca HOM05D007700 ORTHO05D009669 7.3e-36 156.0 203 47.3
Aqoxy6G01792 Aquilegia oxysepala HOM05D007700 ORTHO05D009669 2.3e-34 151.0 219 44.7
Nitab4.5_0003207g0040 Nicotiana tabacum HOM05D007700 ORTHO05D009669 3.7e-32 143.7 154 49.4
CAN.G890.59 Capsicum annuum HOM05D007700 ORTHO05D009669 6.4e-32 142.9 154 49.4
Nitab4.5_0001581g0090 Nicotiana tabacum HOM05D007700 ORTHO05D009669 6.4e-32 142.9 154 48.7
Glyma.03G117900 Glycine max HOM05D007700 ORTHO05D009669 1.4e-31 141.7 275 41.5
EL10Ac6g13369 Beta vulgaris HOM05D007700 ORTHO05D009669 6.6e-29 132.9 218 43.1
MSTRG.1126 Avicennia marina HOM05D007700 ORTHO05D009669 9.5e-28 129.0 236 39.4
BcaC04g22956 Brassica carinata HOM05D007700 ORTHO05D009669 2.8e-27 127.5 110 56.4
AUR62041102 Chenopodium quinoa HOM05D007700 ORTHO05D009669 1.1e-26 125.6 206 41.7
AUR62026170 Chenopodium quinoa HOM05D007700 ORTHO05D009669 3.7e-24 117.1 209 39.7
Actinidia17391 Actinidia chinensis HOM05D000192 ORTHO05D000123 1.9e-23 114.8 105 55.2
ATR0661G421 Amborella trichopoda HOM05D007700 ORTHO05D009669 2.0e-22 111.3 123 49.6
Ah.03g134060 Amaranthus hybridus HOM05D007700 ORTHO05D009669 1.3e-21 108.6 210 36.7
Sc03g0003890 Simmondsia chinensis HOM05D007700 ORTHO05D009669 2.3e-21 107.8 201 37.8
SHI08474 Sapria himalayana HOM05D007700 ORTHO05D009669 4.3e-20 103.6 110 47.3
CDE05G1645 Ceratophyllum demersum HOM05D007700 ORTHO05D009669 2.9e-16 90.9 67 61.2
ATR0739G057 Amborella trichopoda HOM05D007700 ORTHO05D009669 1.6e-14 85.1 255 28.6
arahy.Tifrunner.gnm1.ann1.EU7MKH Arachis hypogaea HOM05D007202 ORTHO05D009125 7.6e-09 66.2 121 33.1
PSO266G0010 Papaver somniferum HOM05D003900 ORTHO05D005009 7.6e-09 66.2 256 23.8
TPR.G14625 Trifolium pratense HOM05D004783 ORTHO05D005581 2.9e-08 64.3 112 34.8
ECA238G1378 Erigeron canadensis HOM05D007700 ORTHO05D009669 3.8e-08 63.9 36 86.1
arahy.Tifrunner.gnm1.ann1.U9PBTF Arachis hypogaea HOM05D007202 ORTHO05D009125 4.9e-08 63.5 121 31.4
Ca_14754_v3 Cicer arietinum L. HOM05D006569 ORTHO05D007515 6.4e-08 63.2 117 27.4
A04p29080 Brassica napus HOM05D000104 ORTHO05D009920 1.1e-07 62.4 263 24.3
COL.COLO4_30370 Corchorus olitorius HOM05D000062 ORTHO05D001642 1.4e-07 62.0 85 34.1
Migut.F00914 Erythranthe guttata HOM05D000162 ORTHO05D000090 1.9e-07 61.6 168 25.6
Glyma.01G073500 Glycine max HOM05D000104 ORTHO05D009920 2.4e-07 61.2 205 25.9
TPR.G38108 Trifolium pratense HOM05D000424 ORTHO05D000355 2.4e-07 61.2 108 30.6
CSS0049050 Camellia sinensis var. sinensis HOM05D007700 ORTHO05D009669 3.2e-07 60.8 36 83.3
Psat5g012240 Pisum sativum HOM05D000424 ORTHO05D000355 3.2e-07 60.8 108 31.5
Sp3g31030 Schrenkiella parvula HOM05D007700 ORTHO05D009669 3.2e-07 60.8 36 83.3
Actinidia29766 Actinidia chinensis HOM05D000424 ORTHO05D000355 4.1e-07 60.5 106 30.2
HPP92_021041 Vanilla planifolia HOM05D006842 ORTHO05D008908 4.1e-07 60.5 233 25.3
ATR0564G068 Amborella trichopoda HOM05D000424 ORTHO05D009254 9.2e-07 59.3 103 29.1
Sabra15G0053100 Salix brachista HOM05D003975 ORTHO05D009762 9.2e-07 59.3 128 25.0
SMO169G0048 Selaginella moellendorffii HOM05D007251 ORTHO05D037542 9.2e-07 59.3 137 27.7
Ciclev10030383m.g Citrus clementina HOM05D000855 ORTHO05D000003 1.2e-06 58.9 176 25.0
QL02p012919 Quercus lobata HOM05D000424 ORTHO05D000355 1.2e-06 58.9 92 32.6
SEGI_11175 Sequoiadendron giganteum HOM05D007202 ORTHO05D009125 1.2e-06 58.9 109 29.4
THA.LOC104803714 Tarenaya hassleriana HOM05D007383 ORTHO05D009254 1.2e-06 58.9 118 29.7
C09p70390 Brassica napus HOM05D006596 ORTHO05D008497 1.6e-06 58.5 118 31.4
SGA_v2.0_scaffold60G20860 Striga asiatica HOM05D000104 ORTHO05D009920 1.6e-06 58.5 86 36.0
TPR.G37490 Trifolium pratense HOM05D002460 ORTHO05D002716 1.6e-06 58.5 201 24.9
BraA10t45038Z Brassica rapa HOM05D006596 ORTHO05D008497 2.1e-06 58.2 118 30.5
FAN10G3574 Fragaria x ananassa HOM05D004271 ORTHO05D006011 2.1e-06 58.2 118 32.2
Medtr3g114700 Medicago truncatula HOM05D000424 ORTHO05D000355 2.1e-06 58.2 103 32.0
Psat6g065880 Pisum sativum HOM05D006895 ORTHO05D008605 2.1e-06 58.2 173 26.6
CARHR261620 Cardamine hirsuta HOM05D007358 ORTHO05D009117 2.7e-06 57.8 65 38.5
CDE05G0100 Ceratophyllum demersum HOM05D007202 ORTHO05D009125 2.7e-06 57.8 116 31.9
MBI16_g41809_MAGBIO Magnolia biondii HOM05D007251 ORTHO05D009266 2.7e-06 57.8 201 23.4
Psat6g065920 Pisum sativum HOM05D006895 ORTHO05D008605 2.7e-06 57.8 230 26.5
SEGI_34039 Sequoiadendron giganteum HOM05D000424 ORTHO05D000355 2.7e-06 57.8 113 29.2
ClCG10G020580 Citrullus lanatus HOM05D001673 ORTHO05D002312 3.5e-06 57.4 127 26.0
SMO364G0194 Selaginella moellendorffii HOM05D007700 ORTHO05D009968 3.5e-06 57.4 79 35.4
A04p13440 Brassica napus HOM05D007358 ORTHO05D009117 4.6e-06 57.0 103 27.2
Cpa.g.sc13.131 Carica papaya HOM05D007402 ORTHO05D003673 4.6e-06 57.0 103 28.2
CDE05G0489 Ceratophyllum demersum HOM05D007202 ORTHO05D009125 4.6e-06 57.0 125 31.2
Dinv21881 Davidia involucrata HOM05D000104 ORTHO05D009920 4.6e-06 57.0 156 27.6
MBI12_g09300_MAGBIO Magnolia biondii HOM05D000855 ORTHO05D008530 4.6e-06 57.0 166 28.3
SMO356G0401 Selaginella moellendorffii HOM05D007128 ORTHO05D000761 4.6e-06 57.0 206 23.3
Aqoxy6G01459 Aquilegia oxysepala HOM05D007660 ORTHO05D009442 6.0e-06 56.6 100 34.0
ClCG01G011340 Citrullus lanatus HOM05D007202 ORTHO05D009125 6.0e-06 56.6 96 33.3
TPR.G2949 Trifolium pratense HOM05D003900 ORTHO05D005009 6.0e-06 56.6 205 24.4
arahy.Tifrunner.gnm1.ann1.3K1SXW Arachis hypogaea HOM05D000162 ORTHO05D000090 7.8e-06 56.2 111 27.9
DCAR_026889 Daucus carota HOM05D007202 ORTHO05D009125 7.8e-06 56.2 94 31.9
PSO832G3824 Papaver somniferum HOM05D007155 ORTHO05D003034 7.8e-06 56.2 72 31.9
Peaxi162Scf00454g00034 Petunia axillaris HOM05D007402 ORTHO05D003673 7.8e-06 56.2 181 26.0


User provided reference genes

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