Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.PW5CDL Arachis hypogaea HOM05D007098 ORTHO05D008793 4.5e-255 884.8 730 100.0
arahy.Tifrunner.gnm1.ann1.RHK9HC Arachis hypogaea HOM05D007098 ORTHO05D008793 7.2e-253 877.5 731 99.6
arahy.Tifrunner.gnm1.ann1.L7HRZC Arachis hypogaea HOM05D007098 ORTHO05D008793 7.8e-207 724.5 377 97.1
Glyma.12G037500 Glycine max HOM05D007098 ORTHO05D008793 6.8e-134 482.3 728 75.1
Phvul.011G039200 Phaseolus vulgaris HOM05D007098 ORTHO05D008793 5.7e-133 479.2 719 74.8
Lj2g0008135 Lotus japonicus HOM05D007098 ORTHO05D008793 1.3e-132 478.0 715 76.1
Glyma.11G111200 Glycine max HOM05D007098 ORTHO05D008793 2.0e-130 470.7 725 74.5
Lalb_Chr10g0098821 Lupinus albus HOM05D007098 ORTHO05D008793 2.8e-127 460.3 714 74.9
Psat2g130240 Pisum sativum HOM05D007098 ORTHO05D008793 4.9e-116 422.9 646 76.9
Medtr5g045490 Medicago truncatula HOM05D007098 ORTHO05D008793 6.4e-116 422.5 714 71.1
Haze_07291 Corylus avellana HOM05D007098 ORTHO05D008793 2.4e-115 420.6 632 77.7
VMungo1127G2011 Vigna mungo HOM05D007098 ORTHO05D008793 6.0e-114 416.0 721 71.2
Glyma.02G116500 Glycine max HOM05D007098 ORTHO05D008793 2.8e-111 407.1 638 77.4
ClCG03G003340 Citrullus lanatus HOM05D007098 ORTHO05D008793 3.1e-110 403.7 713 70.0
Manes.06G113500 Manihot esculenta HOM05D007098 ORTHO05D008793 3.1e-110 403.7 725 67.0
TPR.G24468 Trifolium pratense HOM05D007098 ORTHO05D008793 2.6e-109 400.6 711 70.2
Ciclev10019054m.g Citrus clementina HOM05D007098 ORTHO05D008793 5.8e-109 399.4 707 70.6
QL10p005624 Quercus lobata HOM05D007098 ORTHO05D008793 2.9e-108 397.1 627 77.5
MD06G1160200 Malus domestica HOM05D007098 ORTHO05D008793 1.1e-107 395.2 715 70.5
Ah.08g218330 Amaranthus hybridus HOM05D007098 ORTHO05D008793 4.1e-107 393.3 726 69.4
Gorai.001G062100 Gossypium raimondii HOM05D007098 ORTHO05D008793 5.4e-107 392.9 725 70.5
Atru.chr9.986 Acer truncatum HOM05D007098 ORTHO05D008793 7.1e-107 392.5 708 70.5
EL10Ac7g18049 Beta vulgaris HOM05D007098 ORTHO05D008793 7.1e-107 392.5 688 73.4
Gohir.D07G058600 Gossypium hirsutum HOM05D007098 ORTHO05D008793 1.2e-106 391.7 723 70.3
Gohir.A07G054300 Gossypium hirsutum HOM05D007098 ORTHO05D008793 1.6e-106 391.3 717 70.3
Cpa.g.sc4.42 Carica papaya HOM05D007098 ORTHO05D008793 2.1e-106 391.0 693 71.4
FAN13G2898 Fragaria x ananassa HOM05D007098 ORTHO05D008793 4.6e-106 389.8 709 71.1
Sed0010608 Sechium edule HOM05D007098 ORTHO05D008793 6.0e-106 389.4 682 72.1
Thecc.03G120500 Theobroma cacao HOM05D007098 ORTHO05D008793 1.1e-104 385.2 705 71.1
TWI39G0887 Tripterygium wilfordii HOM05D007098 ORTHO05D008793 1.1e-104 385.2 705 71.1
CiPaw.11G013600 Carya illinoinensis HOM05D007098 ORTHO05D008793 1.5e-104 384.8 629 76.0
FAN18G2243 Fragaria x ananassa HOM05D007098 ORTHO05D008793 1.5e-104 384.8 631 76.2
Phvul.003G042600 Phaseolus vulgaris HOM05D007098 ORTHO05D008793 1.9e-104 384.4 722 70.4
CsaV3_1G009150 Cucumis sativus L. HOM05D007098 ORTHO05D008793 2.5e-104 384.0 632 71.7
FvH4_5g07010 Fragaria vesca HOM05D007098 ORTHO05D008793 2.5e-104 384.0 631 76.4
Hma1.2p1_0014F.1_g009950 Hydrangea macrophylla HOM05D007098 ORTHO05D008793 4.7e-103 379.8 670 72.4
RcHm_v2.0_Chr7g0191671 Rosa chinensis HOM05D007098 ORTHO05D008793 6.2e-103 379.4 686 72.3
Dinv11119 Davidia involucrata HOM05D002040 ORTHO05D002502 1.4e-102 378.3 711 67.4
Sabra12G0066500 Salix brachista HOM05D007098 ORTHO05D008793 1.5e-101 374.8 694 70.7
Cfa018906 Carpinus fangiana HOM05D007098 ORTHO05D008793 3.4e-101 373.6 554 82.5
FAN04G0983 Fragaria x ananassa HOM05D007098 ORTHO05D008793 1.7e-100 371.3 628 65.1
VMungo1215G0824 Vigna mungo HOM05D007098 ORTHO05D008793 8.4e-100 369.0 351 59.0
HanXRQChr09g0272771 Helianthus annuus HOM05D007098 ORTHO05D008793 3.2e-99 367.1 712 66.3
Cc04_g10690 Coffea canephora HOM05D007098 ORTHO05D008793 1.2e-98 365.2 708 69.1
AUR62025750 Chenopodium quinoa HOM05D007098 ORTHO05D008793 6.0e-98 362.8 635 74.8
AUR62001258 Chenopodium quinoa HOM05D007098 ORTHO05D008793 7.8e-98 362.5 642 74.6
Potri.012G091800 Populus trichocarpa HOM05D007098 ORTHO05D008793 5.1e-97 359.8 718 68.7
CSS0030055 Camellia sinensis var. sinensis HOM05D007098 ORTHO05D008793 8.7e-97 359.0 320 59.4
Prupe.5G160200 Prunus persica HOM05D007098 ORTHO05D008793 8.7e-97 359.0 704 68.3
Nn5g28372 Nelumbo nucifera HOM05D007098 ORTHO05D008793 1.2e-95 355.1 711 68.5
GSVIVG01007576001 Vitis vinifera HOM05D007098 ORTHO05D008793 1.6e-95 354.8 707 69.9
MELO3C002322.2 Cucumis melo HOM05D007098 ORTHO05D008793 2.4e-94 350.9 691 68.0
Duzib205G2031 Durio zibethinus HOM05D007098 ORTHO05D008793 1.2e-93 348.6 710 68.3
PSO782G3618 Papaver somniferum HOM05D007098 ORTHO05D008793 3.4e-93 347.1 727 67.4
CSS0038177 Camellia sinensis var. sinensis HOM05D007098 ORTHO05D008793 9.9e-93 345.5 625 72.2
PSO063G4104 Papaver somniferum HOM05D007098 ORTHO05D008793 9.9e-93 345.5 727 67.3
MSTRG.9703 Avicennia marina HOM05D007098 ORTHO05D008793 1.3e-92 345.1 723 67.2
PGSC0003DMG400015232 Solanum tuberosum HOM05D007098 ORTHO05D008793 3.2e-91 340.5 686 70.0
Ca_04973_v3 Cicer arietinum L. HOM05D007098 ORTHO05D008793 7.1e-91 339.3 405 74.6
TAR371G0113 Trochodendron aralioides HOM05D007098 ORTHO05D008793 1.7e-89 334.7 699 67.4
MBI11_g46348_MAGBIO Magnolia biondii HOM05D007098 ORTHO05D008793 2.3e-89 334.3 694 69.0
THA.LOC104824999 Tarenaya hassleriana HOM05D007098 ORTHO05D008793 8.7e-89 332.4 707 64.8
CANSAT80G2237 Cannabis sativa HOM05D007098 ORTHO05D008793 4.8e-87 326.6 644 70.8
SGA_v2.0_scaffold45G17096 Striga asiatica HOM05D006560 ORTHO05D008164 4.8e-87 326.6 675 64.4
Carub.0008s1032 Capsella rubella HOM05D007098 ORTHO05D008793 1.4e-86 325.1 724 65.5
Aa31LG3G5960 Aethionema arabicum HOM05D007098 ORTHO05D008793 9.0e-86 322.4 695 67.5
Dinv38489 Davidia involucrata HOM05D007098 ORTHO05D008793 2.6e-85 320.9 448 67.2
AL8G24320 Arabidopsis lyrata HOM05D007098 ORTHO05D008793 2.9e-84 317.4 704 65.9
AT5G50280 Arabidopsis thaliana HOM05D007098 ORTHO05D008793 3.8e-84 317.0 701 66.2
CARHR258300 Cardamine hirsuta HOM05D007098 ORTHO05D008793 7.1e-83 312.8 711 63.6
CDE09G0597 Ceratophyllum demersum HOM05D007098 ORTHO05D008793 1.6e-82 311.6 345 50.4
Sp6g12370 Schrenkiella parvula HOM05D007098 ORTHO05D008793 1.6e-82 311.6 630 69.8
Peaxi162Scf00089g00927 Petunia axillaris HOM05D007098 ORTHO05D008793 2.7e-82 310.8 701 67.8
Lsat_1_v5_gn_4_78280 Lactuca sativa HOM05D007098 ORTHO05D008793 3.5e-82 310.5 339 51.3
Actinidia16202 Actinidia chinensis HOM05D007098 ORTHO05D008793 7.9e-82 309.3 675 65.5
vmacro19257 Vaccinium macrocarpon HOM05D007098 ORTHO05D008793 5.1e-81 306.6 584 73.6
Rhsim08G0182900 Rhododendron simsii HOM05D007098 ORTHO05D008793 8.7e-81 305.8 590 73.6
SalBow1G0423 Salvia bowleyana HOM05D007098 ORTHO05D008793 3.3e-80 303.9 516 51.4
Thhalv10012796m.g Eutrema salsugineum HOM05D007098 ORTHO05D008793 4.3e-80 303.5 702 65.8
ECA232G2468 Erigeron canadensis HOM05D001195 ORTHO05D001138 2.8e-79 300.8 440 58.0
Migut.D02039 Erythranthe guttata HOM05D007098 ORTHO05D008793 1.1e-78 298.9 720 63.8
Eucgr.B00165 Eucalyptus grandis HOM05D007098 ORTHO05D008793 2.4e-78 297.7 503 83.3
Sopen03g030770 Solanum pennellii HOM05D007098 ORTHO05D008793 4.0e-78 297.0 716 65.5
Sc22g0003940 Simmondsia chinensis HOM05D007098 ORTHO05D008793 6.9e-78 296.2 680 65.9
BcaB01g02904 Brassica carinata HOM05D007098 ORTHO05D008793 1.2e-77 295.4 629 64.4
BraA03t11986Z Brassica rapa HOM05D007098 ORTHO05D008793 1.2e-77 295.4 703 60.5
Nitab4.5_0001360g0150 Nicotiana tabacum HOM05D007098 ORTHO05D008793 5.8e-77 293.1 699 66.4
BolC3t15668H Brassica oleracea HOM05D007098 ORTHO05D008793 1.7e-76 291.6 723 59.8
BcaC01g04822 Brassica carinata HOM05D007098 ORTHO05D008793 4.9e-76 290.0 708 60.7
Nitab4.5_0006717g0020 Nicotiana tabacum HOM05D007098 ORTHO05D008793 6.4e-76 289.7 703 66.0
Solyc03g111650.4 Solanum lycopersicum HOM05D007098 ORTHO05D008793 6.4e-76 289.7 372 48.1
A03p27750 Brassica napus HOM05D007098 ORTHO05D008793 1.1e-75 288.9 707 59.7
C03p33470 Brassica napus HOM05D007098 ORTHO05D008793 9.3e-75 285.8 705 60.4
ATR0824G168 Amborella trichopoda HOM05D007098 ORTHO05D008793 1.2e-74 285.4 672 67.0
Hund21512 Selenicereus undatus HOM05D007098 ORTHO05D008793 1.6e-74 285.0 280 54.6
Lj5A101T108 Lonicera japonica HOM05D007098 ORTHO05D008793 6.5e-68 263.1 201 62.2
Glyma.01G059100 Glycine max HOM05D007098 ORTHO05D008793 5.5e-67 260.0 509 81.3
SEGI_05165 Sequoiadendron giganteum HOM05D007098 ORTHO05D008793 6.1e-50 203.4 341 60.4
CAN.G472.49 Capsicum annuum HOM05D007098 ORTHO05D008793 6.7e-49 199.9 486 78.6
HPP92_024236 Vanilla planifolia HOM05D007098 ORTHO05D008793 3.3e-48 197.6 504 73.8
Os05g0294600 Oryza sativa ssp. japonica HOM05D007098 ORTHO05D008793 1.4e-46 192.2 541 66.4
Ca_26530_v3 Cicer arietinum L. HOM05D005706 ORTHO05D008793 3.2e-43 181.0 237 89.5
Ca_30971_v3 Cicer arietinum L. HOM05D007098 ORTHO05D008793 2.7e-34 151.4 185 48.6
Cpa.g.sc4.27 Carica papaya HOM05D006000 ORTHO05D008793 7.5e-32 143.3 121 59.5
Mapoly0023s0082 Marchantia polymorpha HOM05D007098 ORTHO05D008793 1.0e-25 122.9 304 28.3
DCAR_021600 Daucus carota HOM05D007098 ORTHO05D008793 7.0e-22 110.2 76 69.7
Duzib084G0201 Durio zibethinus HOM05D007098 ORTHO05D008793 9.1e-22 109.8 77 68.8
Lj5C101T15 Lonicera japonica HOM05D007098 ORTHO05D008793 2.7e-21 108.2 73 75.3
arahy.Tifrunner.gnm1.ann1.0Z4KK5 Arachis hypogaea HOM05D007098 ORTHO05D008793 7.7e-21 106.7 56 94.6
MBI11_g46065_MAGBIO Magnolia biondii HOM05D007098 ORTHO05D008793 3.8e-20 104.4 83 63.9
AagrBONN_evm.TU.Sc2ySwM_228.5130 Anthoceros agrestis HOM05D007098 ORTHO05D008793 5.5e-19 100.5 172 32.6
Zm00001eb154110 Zea mays HOM05D007098 ORTHO05D008793 1.8e-17 95.5 74 62.2
Hma1.2p1_0014F.1_g009960 Hydrangea macrophylla HOM05D007098 ORTHO05D008793 2.4e-14 85.1 65 64.6
ClCG03G003360 Citrullus lanatus HOM05D007098 ORTHO05D008793 2.9e-07 61.6 59 54.2
CDE07G1469 Ceratophyllum demersum HOM05D003056 ORTHO05D003422 1.4e-06 59.3 145 22.8
THA.LOC104807228 Tarenaya hassleriana HOM05D003056 ORTHO05D003422 1.4e-06 59.3 140 27.9
AUR62019299 Chenopodium quinoa HOM05D000001 ORTHO05D000003 3.2e-06 58.2 99 25.3
Hma1.2p1_0057F.1_g032040 Hydrangea macrophylla HOM05D004783 ORTHO05D005581 9.2e-06 56.6 157 26.8


User provided reference genes

Program Settings