Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.PPI4NM Arachis hypogaea HOM05D003539 ORTHO05D004111 0.0e+00 1286.6 692 100.0
arahy.Tifrunner.gnm1.ann1.4LH58N Arachis hypogaea HOM05D003539 ORTHO05D004111 0.0e+00 1204.9 743 86.1
arahy.Tifrunner.gnm1.ann1.VZS2MK Arachis hypogaea HOM05D003539 ORTHO05D004111 0.0e+00 1163.3 756 81.5
arahy.Tifrunner.gnm1.ann1.UQ0JCX Arachis hypogaea HOM05D003539 ORTHO05D004111 0.0e+00 1151.3 750 81.7
arahy.Tifrunner.gnm1.ann1.JIK3X3 Arachis hypogaea HOM05D003539 ORTHO05D004111 0.0e+00 1148.7 742 82.9
Glyma.16G112800 Glycine max HOM05D003539 ORTHO05D004111 7.6e-252 874.0 698 67.0
Glyma.09G196200 Glycine max HOM05D003539 ORTHO05D004111 3.2e-250 868.6 699 66.7
Lalb_Chr09g0334501 Lupinus albus HOM05D003539 ORTHO05D004111 1.9e-239 832.8 696 66.4
Phvul.010G020100 Phaseolus vulgaris HOM05D003539 ORTHO05D004111 9.6e-239 830.5 696 64.5
VMungo1309G1473 Vigna mungo HOM05D003539 ORTHO05D004111 7.1e-234 814.3 692 64.9
Lalb_Chr05g0229501 Lupinus albus HOM05D003539 ORTHO05D004111 4.1e-229 798.5 693 63.3
Ca_21575_v3 Cicer arietinum L. HOM05D003539 ORTHO05D004111 2.7e-225 785.8 689 61.8
Lj4g0013403 Lotus japonicus HOM05D003539 ORTHO05D004111 6.3e-222 774.6 703 61.9
Medtr4g117680 Medicago truncatula HOM05D003539 ORTHO05D004111 7.4e-207 724.5 686 59.2
Psat3g044960 Pisum sativum HOM05D003539 ORTHO05D004111 2.0e-204 716.5 667 60.6
Psat7g042440 Pisum sativum HOM05D003539 ORTHO05D004111 2.9e-203 712.6 713 57.5
TPR.G29658 Trifolium pratense HOM05D003539 ORTHO05D004111 8.8e-200 701.0 712 57.2
GSVIVG01026448001 Vitis vinifera HOM05D003539 ORTHO05D004111 3.8e-195 685.6 694 54.9
Eucgr.J02557 Eucalyptus grandis HOM05D003539 ORTHO05D004111 5.7e-191 671.8 704 52.8
TWI79G1391 Tripterygium wilfordii HOM05D003539 ORTHO05D004111 1.1e-189 667.5 690 53.2
CSS0035723 Camellia sinensis var. sinensis HOM05D003539 ORTHO05D004111 4.1e-189 665.6 700 53.0
Dinv40214 Davidia involucrata HOM05D003539 ORTHO05D004111 9.1e-189 664.5 700 53.7
Thecc.01G002200 Theobroma cacao HOM05D003539 ORTHO05D004111 2.0e-188 663.3 701 53.8
Gorai.003G064600 Gossypium raimondii HOM05D003539 ORTHO05D004111 3.8e-187 659.1 710 52.3
Gohir.D03G066500 Gossypium hirsutum HOM05D003539 ORTHO05D004111 2.5e-186 656.4 710 52.0
Atru.chr3.55 Acer truncatum HOM05D003539 ORTHO05D004111 3.2e-186 656.0 704 52.7
Manes.01G157300 Manihot esculenta HOM05D003539 ORTHO05D004111 6.1e-185 651.7 695 52.8
Dinv28297 Davidia involucrata HOM05D003539 ORTHO05D004111 6.8e-184 648.3 700 51.7
TAR381G1444 Trochodendron aralioides HOM05D003539 ORTHO05D004111 9.2e-181 637.9 707 50.5
Hma1.2p1_0085F.1_g044410 Hydrangea macrophylla HOM05D003539 ORTHO05D004111 4.5e-180 635.6 710 51.4
vmacro18474 Vaccinium macrocarpon HOM05D003539 ORTHO05D004111 4.5e-180 635.6 716 50.4
Sed0003470 Sechium edule HOM05D003539 ORTHO05D004111 6.6e-179 631.7 684 50.4
PGR044G1248 Punica granatum HOM05D003539 ORTHO05D004111 2.8e-177 626.3 687 49.9
Nn5g28137 Nelumbo nucifera HOM05D003539 ORTHO05D004111 3.6e-177 625.9 707 50.5
Haze_03640 Corylus avellana HOM05D003539 ORTHO05D004111 8.9e-176 621.3 690 52.3
Sc06g0005250 Simmondsia chinensis HOM05D003539 ORTHO05D004111 1.5e-175 620.5 709 49.5
Cfa007110 Carpinus fangiana HOM05D003539 ORTHO05D004111 1.7e-174 617.1 690 52.2
QL06p053198 Quercus lobata HOM05D003539 ORTHO05D004111 2.4e-173 613.2 691 50.1
ClCG02G000270 Citrullus lanatus HOM05D003539 ORTHO05D004111 5.4e-173 612.1 708 49.3
Oeu010807.1 Olea europaea HOM05D003539 ORTHO05D004111 1.2e-172 610.9 700 49.1
Oeu063413.2 Olea europaea HOM05D003539 ORTHO05D004111 5.9e-172 608.6 701 48.8
CiPaw.15G173100 Carya illinoinensis HOM05D003539 ORTHO05D004111 1.9e-170 603.6 689 49.9
Manes.11G091200 Manihot esculenta HOM05D003539 ORTHO05D004111 9.5e-170 601.3 696 49.9
CANSAT35G0647 Cannabis sativa HOM05D003539 ORTHO05D004111 3.6e-169 599.4 684 48.7
COL.COLO4_16224 Corchorus olitorius HOM05D003539 ORTHO05D004111 4.0e-168 595.9 693 49.6
Potri.005G098500 Populus trichocarpa HOM05D003539 ORTHO05D004111 4.0e-168 595.9 701 49.9
TAR376G1176 Trochodendron aralioides HOM05D003539 ORTHO05D004111 4.0e-168 595.9 666 51.5
Cc07_g12170 Coffea canephora HOM05D003539 ORTHO05D004111 1.5e-167 594.0 700 48.3
Lsat_1_v5_gn_5_30740 Lactuca sativa HOM05D003539 ORTHO05D004111 1.5e-167 594.0 682 49.3
THA.LOC104814350 Tarenaya hassleriana HOM05D003539 ORTHO05D004111 4.1e-165 585.9 691 47.8
CsaV3_3G008890 Cucumis sativus L. HOM05D003539 ORTHO05D004111 5.4e-165 585.5 595 52.4
Rhsim08G0026200 Rhododendron simsii HOM05D003539 ORTHO05D004111 9.2e-165 584.7 695 48.8
HanXRQChr16g0510861 Helianthus annuus HOM05D003539 ORTHO05D004111 2.0e-164 583.6 678 49.1
Lj2C504G7 Lonicera japonica HOM05D003539 ORTHO05D004111 2.0e-164 583.6 595 53.1
Sed0013779 Sechium edule HOM05D003539 ORTHO05D004111 4.3e-162 575.9 598 51.2
Prupe.7G186400 Prunus persica HOM05D003539 ORTHO05D004111 5.6e-162 575.5 683 49.5
ClCG05G001500 Citrullus lanatus HOM05D003539 ORTHO05D004111 9.5e-162 574.7 708 47.3
MSTRG.20424 Avicennia marina HOM05D003539 ORTHO05D004111 1.2e-161 574.3 693 47.0
ECA233G1070 Erigeron canadensis HOM05D000002 ORTHO05D000001 4.0e-160 569.3 688 46.7
Hund21770 Selenicereus undatus HOM05D003539 ORTHO05D004111 9.8e-159 564.7 715 47.4
EL10Ac4g09711 Beta vulgaris HOM05D003539 ORTHO05D004111 2.2e-158 563.5 697 46.6
Sabra05G0080900 Salix brachista HOM05D003539 ORTHO05D004111 8.3e-158 561.6 666 49.4
Nitab4.5_0000588g0180 Nicotiana tabacum HOM05D003539 ORTHO05D004111 9.2e-157 558.1 698 46.7
Duzib147G0916 Durio zibethinus HOM05D003539 ORTHO05D004111 1.0e-155 554.7 682 48.8
Aa31LG6G11830 Aethionema arabicum HOM05D003539 ORTHO05D004111 1.7e-155 553.9 678 46.8
Nitab4.5_0000855g0080 Nicotiana tabacum HOM05D003539 ORTHO05D004111 2.3e-155 553.5 696 46.1
AL4G30740 Arabidopsis lyrata HOM05D003539 ORTHO05D004111 5.1e-155 552.4 682 46.5
Nitab4.5_0003096g0020 Nicotiana tabacum HOM05D003539 ORTHO05D004111 4.3e-154 549.3 669 46.9
MD02G1108900 Malus domestica HOM05D003539 ORTHO05D004111 3.6e-153 546.2 691 46.7
MBI04_g31205_MAGBIO Magnolia biondii HOM05D003539 ORTHO05D004111 1.4e-152 544.3 696 46.8
MELO3C006107.2 Cucumis melo HOM05D003539 ORTHO05D004111 3.1e-152 543.1 604 50.5
AT2G34750 Arabidopsis thaliana HOM05D003539 ORTHO05D004111 4.0e-152 542.7 682 45.5
Aa31LG10G6570 Aethionema arabicum HOM05D003539 ORTHO05D004111 5.2e-152 542.3 687 44.8
Thhalv10007103m.g Eutrema salsugineum HOM05D003539 ORTHO05D004111 8.9e-152 541.6 679 46.4
SGA_v2.0_scaffold36G14401 Striga asiatica HOM05D003539 ORTHO05D004111 1.3e-150 537.7 692 44.8
CARHR128910 Cardamine hirsuta HOM05D003539 ORTHO05D004111 1.7e-150 537.3 681 45.5
SGA_v2.0_scaffold172G38971 Striga asiatica HOM05D003539 ORTHO05D004111 1.1e-149 534.6 763 42.7
Solyc02g082340.3 Solanum lycopersicum HOM05D003539 ORTHO05D004111 5.4e-149 532.3 695 45.3
Migut.A00468 Erythranthe guttata HOM05D003539 ORTHO05D004111 1.2e-148 531.2 693 43.7
Sopen02g027000 Solanum pennellii HOM05D003539 ORTHO05D004111 1.6e-148 530.8 695 44.9
Haze_00123 Corylus avellana HOM05D003539 ORTHO05D004111 2.1e-148 530.4 685 47.0
Sp4g17040 Schrenkiella parvula HOM05D003539 ORTHO05D004111 1.0e-147 528.1 676 45.1
Thhalv10016395m.g Eutrema salsugineum HOM05D003539 ORTHO05D004111 1.3e-147 527.7 680 44.7
CAN.G1428.5 Capsicum annuum HOM05D003539 ORTHO05D004111 3.9e-147 526.2 701 43.5
Carub.0004s1644 Capsella rubella HOM05D003539 ORTHO05D004111 5.1e-147 525.8 679 44.9
Aqoxy6G01535 Aquilegia oxysepala HOM05D003539 ORTHO05D004111 2.5e-146 523.5 715 45.0
PSO170G6051 Papaver somniferum HOM05D003539 ORTHO05D004111 3.3e-146 523.1 692 44.8
PSO017G0405 Papaver somniferum HOM05D003539 ORTHO05D004111 2.1e-145 520.4 696 44.5
AL1G44630 Arabidopsis lyrata HOM05D003539 ORTHO05D004111 4.7e-145 519.2 684 44.3
HanXRQChr09g0270331 Helianthus annuus HOM05D003539 ORTHO05D004111 1.4e-144 517.7 676 45.3
Ah.06g188300 Amaranthus hybridus HOM05D003539 ORTHO05D004111 3.2e-141 506.5 690 43.8
Actinidia28753 Actinidia chinensis HOM05D003539 ORTHO05D004111 2.1e-140 503.8 680 45.3
Carub.0001s2885 Capsella rubella HOM05D003539 ORTHO05D004111 2.1e-140 503.8 680 44.6
Hund28202 Selenicereus undatus HOM05D003539 ORTHO05D004111 7.8e-140 501.9 733 42.8
Hund28214 Selenicereus undatus HOM05D003539 ORTHO05D004111 7.8e-140 501.9 733 42.8
RcHm_v2.0_Chr2g0096801 Rosa chinensis HOM05D003539 ORTHO05D004111 1.3e-139 501.1 703 44.4
Cfa016374 Carpinus fangiana HOM05D003539 ORTHO05D004111 2.3e-139 500.4 650 46.0
Peaxi162Scf00677g00114 Petunia axillaris HOM05D003539 ORTHO05D004111 3.9e-139 499.6 695 42.7
BcaB06g28796 Brassica carinata HOM05D003539 ORTHO05D004111 1.5e-138 497.7 688 42.4
FAN28G2151 Fragaria x ananassa HOM05D003539 ORTHO05D004111 9.6e-138 495.0 698 44.0
FAN26G1725 Fragaria x ananassa HOM05D003539 ORTHO05D004111 1.6e-137 494.2 698 44.3
FvH4_1g10010 Fragaria vesca HOM05D003539 ORTHO05D004111 2.1e-137 493.8 697 44.0
Sc09g0001980 Simmondsia chinensis HOM05D003539 ORTHO05D004111 3.1e-136 490.0 583 48.9
AUR62006940 Chenopodium quinoa HOM05D003539 ORTHO05D004111 2.6e-135 486.9 698 42.6
FAN19G1026 Fragaria x ananassa HOM05D003539 ORTHO05D004111 7.6e-135 485.3 708 43.4
Aqoxy3G00418 Aquilegia oxysepala HOM05D003539 ORTHO05D004111 2.2e-134 483.8 713 43.2
THA.LOC104798595 Tarenaya hassleriana HOM05D003539 ORTHO05D004111 2.2e-134 483.8 640 44.7
FAN23G2523 Fragaria x ananassa HOM05D003539 ORTHO05D004111 8.4e-134 481.9 716 42.7
BolC3t14644H Brassica oleracea HOM05D003539 ORTHO05D004111 5.4e-133 479.2 693 42.3
BraA04t18159Z Brassica rapa HOM05D003539 ORTHO05D004111 9.3e-133 478.4 688 41.3
A04p26550 Brassica napus HOM05D003539 ORTHO05D004111 1.2e-132 478.0 688 41.0
C03p22480 Brassica napus HOM05D003539 ORTHO05D004111 3.5e-132 476.5 693 42.0
Aqoxy3G00897 Aquilegia oxysepala HOM05D003539 ORTHO05D004111 4.6e-132 476.1 667 44.8
BraA03t11183Z Brassica rapa HOM05D003539 ORTHO05D004111 6.0e-132 475.7 689 41.8
A03p19290 Brassica napus HOM05D003539 ORTHO05D004111 6.7e-131 472.2 689 41.8
AT1G30590 Arabidopsis thaliana HOM05D003539 ORTHO05D004111 4.3e-130 469.5 677 42.4
CDE07G0217 Ceratophyllum demersum HOM05D003539 ORTHO05D004111 7.4e-130 468.8 616 44.8
unitig_699.g19839 Utricularia gibba HOM05D003539 ORTHO05D004111 2.1e-129 467.2 677 42.4
AUR62000583 Chenopodium quinoa HOM05D003539 ORTHO05D004111 7.6e-127 458.8 697 40.7
Peaxi162Scf00344g01722 Petunia axillaris HOM05D003539 ORTHO05D004111 1.3e-126 458.0 730 39.7
Gohir.A02G120000 Gossypium hirsutum HOM05D003539 ORTHO05D004111 2.2e-126 457.2 528 50.4
Os06g0688100 Oryza sativa ssp. japonica HOM05D003539 ORTHO05D004111 4.2e-125 453.0 702 39.5
SEGI_33601 Sequoiadendron giganteum HOM05D003539 ORTHO05D004111 5.3e-120 436.0 699 39.1
Carub.0004s2129 Capsella rubella HOM05D003539 ORTHO05D004111 5.5e-117 426.0 687 39.6
ATR0605G358 Amborella trichopoda HOM05D003539 ORTHO05D004111 4.6e-116 422.9 596 41.6
BraA05t20035Z Brassica rapa HOM05D003539 ORTHO05D004111 6.7e-115 419.1 684 38.9
AL4G35010 Arabidopsis lyrata HOM05D003539 ORTHO05D004111 8.7e-115 418.7 680 39.4
BcaC06g35972 Brassica carinata HOM05D003539 ORTHO05D004111 1.5e-114 417.9 673 40.0
BolC4t22991H Brassica oleracea HOM05D003539 ORTHO05D004111 3.3e-114 416.8 684 38.6
C04p14010 Brassica napus HOM05D003539 ORTHO05D004111 1.1e-112 411.8 684 38.5
C07p01640 Brassica napus HOM05D003539 ORTHO05D004111 5.3e-112 409.5 651 40.9
AT2G39240 Arabidopsis thaliana HOM05D003539 ORTHO05D004111 1.9e-109 401.0 697 38.5
Zm00001eb226160 Zea mays HOM05D003539 ORTHO05D004111 2.5e-109 400.6 703 37.7
Peaxi162Scf00015g00939 Petunia axillaris HOM05D003539 ORTHO05D004111 1.9e-106 391.0 690 38.6
Mapoly0144s0013 Marchantia polymorpha HOM05D003539 ORTHO05D004111 1.1e-101 375.2 641 38.2
Pp3c21_14490 Physcomitrium patens HOM05D003539 ORTHO05D004111 1.1e-96 358.6 708 34.6
BcaC02g11551 Brassica carinata HOM05D003539 ORTHO05D004111 5.9e-95 352.8 691 35.6
Pp3c18_6750 Physcomitrium patens HOM05D003539 ORTHO05D004111 1.0e-94 352.1 653 35.2
Pp3c18_6751 Physcomitrium patens HOM05D003539 ORTHO05D004111 1.0e-94 352.1 653 35.2
SMO356G0429 Selaginella moellendorffii HOM05D003539 ORTHO05D004111 4.4e-90 336.7 615 36.3
Actinidia02872 Actinidia chinensis HOM05D003539 ORTHO05D004111 1.6e-87 328.2 360 50.6
SalBow7G2073 Salvia bowleyana HOM05D003539 ORTHO05D004111 1.6e-87 328.2 393 46.8
Actinidia20763 Actinidia chinensis HOM05D003539 ORTHO05D004111 1.7e-86 324.7 379 48.8
C04p63970 Brassica napus HOM05D003539 ORTHO05D004111 1.5e-85 321.6 503 39.8
AL4G36550 Arabidopsis lyrata HOM05D003539 ORTHO05D004111 1.4e-83 315.1 640 35.5
C07p01430 Brassica napus HOM05D003539 ORTHO05D004111 4.4e-82 310.1 518 41.1
BcaC01g05764 Brassica carinata HOM05D003539 ORTHO05D004111 3.1e-80 303.9 478 38.7
FAN23G0637 Fragaria x ananassa HOM05D003539 ORTHO05D004111 1.6e-76 291.6 398 43.5
Actinidia20762 Actinidia chinensis HOM05D003539 ORTHO05D004111 3.0e-75 287.3 327 51.1
AagrBONN_evm.TU.Sc2ySwM_368.2744 Anthoceros agrestis HOM05D003539 ORTHO05D004111 7.0e-72 276.2 594 33.0
HPP92_018392 Vanilla planifolia HOM05D003539 ORTHO05D004111 2.0e-71 274.6 478 37.9
arahy.Tifrunner.gnm1.ann1.PJLZ8M Arachis hypogaea HOM05D003539 ORTHO05D004111 1.2e-68 265.4 165 86.1
Oeu000297.1 Olea europaea HOM05D003539 ORTHO05D004111 1.8e-67 261.5 255 55.3
DCAR_007550 Daucus carota HOM05D003539 ORTHO05D004111 2.9e-62 244.2 260 51.2
BolC4t27866H Brassica oleracea HOM05D003539 ORTHO05D004111 1.5e-58 231.9 257 49.4
SalBow7G0297 Salvia bowleyana HOM05D003539 ORTHO05D004111 4.4e-58 230.3 266 48.1
SHI13961 Sapria himalayana HOM05D003539 ORTHO05D004111 4.9e-57 226.9 384 38.8
BcaC06g35980 Brassica carinata HOM05D003539 ORTHO05D004111 3.3e-53 214.2 286 46.5
Ciclev10010838m.g Citrus clementina HOM05D003539 ORTHO05D004111 4.7e-52 210.3 191 56.5
Gohir.A02G119802 Gossypium hirsutum HOM05D003539 ORTHO05D004111 4.1e-48 197.2 172 57.0
DCAR_007549 Daucus carota HOM05D003539 ORTHO05D004111 3.5e-47 194.1 183 54.6
Cre03.g207950 Chlamydomonas reinhardtii HOM05D003539 ORTHO05D004111 6.6e-46 189.9 676 25.9
BcaB05g23816 Brassica carinata HOM05D003539 ORTHO05D004111 1.5e-45 188.7 357 33.1
PSO782G3432 Papaver somniferum HOM05D003539 ORTHO05D004111 4.7e-44 183.7 360 34.7
GSVIVG01026439001 Vitis vinifera HOM05D003539 ORTHO05D004111 1.2e-42 179.1 170 52.9
RcHm_v2.0_Chr2g0096841 Rosa chinensis HOM05D003539 ORTHO05D004111 7.3e-37 159.8 205 45.4
CBR_g23271 Chara braunii HOM05D003539 ORTHO05D004111 1.7e-33 148.7 358 29.9
PRCOL_00004831 Prasinoderma coloniale HOM05D003539 ORTHO05D004111 3.5e-31 141.0 613 24.5
BcaC06g35981 Brassica carinata HOM05D003539 ORTHO05D004111 3.0e-30 137.9 195 40.0
CBR_g23267 Chara braunii HOM05D000019 ORTHO05D000048 9.6e-29 132.9 172 41.3
Medtr8g085920 Medicago truncatula HOM05D003539 ORTHO05D004111 1.3e-22 112.5 93 65.6
EL10Ac6g14558 Beta vulgaris HOM05D003539 ORTHO05D004111 1.7e-22 112.1 99 55.6
MCO15G598 Micromonas commoda HOM05D003539 ORTHO05D004111 3.3e-21 107.8 657 23.9
Cpa.g.sc7.212 Carica papaya HOM05D003539 ORTHO05D004111 1.3e-20 105.9 222 33.8
HanXRQChr05g0145981 Helianthus annuus HOM05D003539 ORTHO05D004111 1.6e-20 105.5 137 43.1
Cfa022001 Carpinus fangiana HOM05D003539 ORTHO05D004111 6.2e-20 103.6 156 44.2
Cfa022324 Carpinus fangiana HOM05D003539 ORTHO05D004111 6.9e-19 100.1 579 23.0
C03p59690 Brassica napus HOM05D003539 ORTHO05D004111 1.9e-16 92.0 71 57.7
BolC3t18231H Brassica oleracea HOM05D003539 ORTHO05D004111 1.9e-16 92.0 71 57.7
Medtr4g117730 Medicago truncatula HOM05D003539 ORTHO05D004111 2.4e-16 91.7 65 69.2
Psat0s4462g0080 Pisum sativum HOM05D003539 ORTHO05D004111 2.4e-16 91.7 75 68.0
Cpa.g.sc7.213 Carica papaya HOM05D003539 ORTHO05D004111 1.2e-15 89.4 67 55.2
arahy.Tifrunner.gnm1.ann1.F27BB1 Arachis hypogaea HOM05D004917 ORTHO05D005954 2.1e-12 78.6 43 90.7
Potri.007G065101 Populus trichocarpa HOM05D003539 ORTHO05D004111 3.7e-12 77.8 145 40.0
GSVIVG01026438001 Vitis vinifera HOM05D003539 ORTHO05D004111 1.8e-06 58.9 43 67.4
GSVIVG01026437001 Vitis vinifera HOM05D003539 ORTHO05D004111 5.1e-06 57.4 45 57.8


User provided reference genes

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