Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.PNNP45 Arachis hypogaea HOM05D013884 ORTHO05D000664 2.3e-93 345.5 166 100.0
arahy.Tifrunner.gnm1.ann1.F65VEP Arachis hypogaea HOM05D013884 ORTHO05D085042 4.1e-18 95.5 62 79.0
arahy.Tifrunner.gnm1.ann1.V12YJ2 Arachis hypogaea HOM05D013884 ORTHO05D087114 3.2e-15 85.9 70 64.3
Glyma.13G284900 Glycine max HOM05D000839 ORTHO05D000664 4.6e-14 82.0 54 66.7
arahy.Tifrunner.gnm1.ann1.E0CBZR Arachis hypogaea HOM05D000839 ORTHO05D000664 6.1e-14 81.6 57 68.4
arahy.Tifrunner.gnm1.ann1.INL5UD Arachis hypogaea HOM05D000839 ORTHO05D000664 6.1e-14 81.6 52 73.1
Lj3g0018221 Lotus japonicus HOM05D000839 ORTHO05D000664 7.9e-14 81.3 56 66.1
Ca_01780_v3 Cicer arietinum L. HOM05D000839 ORTHO05D000664 1.8e-13 80.1 54 64.8
Ca_30766_v3 Cicer arietinum L. HOM05D000839 ORTHO05D000664 1.8e-13 80.1 54 64.8
ATR0804G086 Amborella trichopoda HOM05D000839 ORTHO05D000664 1.5e-12 77.0 54 63.0
Phvul.005G089600 Phaseolus vulgaris HOM05D000839 ORTHO05D000664 1.5e-12 77.0 57 63.2
arahy.Tifrunner.gnm1.ann1.XT64QF Arachis hypogaea HOM05D013884 ORTHO05D085133 3.3e-12 75.9 116 46.6
vmacro09599 Vaccinium macrocarpon HOM05D000839 ORTHO05D000664 3.3e-12 75.9 53 62.3
vmacro22730 Vaccinium macrocarpon HOM05D000839 ORTHO05D000664 3.3e-12 75.9 53 62.3
vmacro22762 Vaccinium macrocarpon HOM05D000839 ORTHO05D000664 3.3e-12 75.9 53 62.3
RhsimUnG0254400 Rhododendron simsii HOM05D000839 ORTHO05D000664 7.4e-12 74.7 51 64.7
VMungo1080G0518 Vigna mungo HOM05D000839 ORTHO05D000664 7.4e-12 74.7 51 64.7
Lj1A861T65 Lonicera japonica HOM05D000839 ORTHO05D000664 1.3e-11 73.9 50 68.0
PSO210G4733 Papaver somniferum HOM05D000839 ORTHO05D000664 1.3e-11 73.9 51 64.7
TWI39G0454 Tripterygium wilfordii HOM05D000839 ORTHO05D000664 1.3e-11 73.9 49 63.3
arahy.Tifrunner.gnm1.ann1.VS1BI5 Arachis hypogaea HOM05D013884 ORTHO05D031603 1.7e-11 73.6 69 65.2
Migut.M01826 Erythranthe guttata HOM05D000839 ORTHO05D000664 1.7e-11 73.6 92 44.6
Phvul.011G145400 Phaseolus vulgaris HOM05D000839 ORTHO05D000664 1.7e-11 73.6 41 78.0
Psat5g249160 Pisum sativum HOM05D000839 ORTHO05D000664 1.7e-11 73.6 55 60.0
CSS0015337 Camellia sinensis var. sinensis HOM05D000839 ORTHO05D000664 2.2e-11 73.2 52 63.5
Prupe.4G197800 Prunus persica HOM05D000839 ORTHO05D000664 2.2e-11 73.2 54 59.3
Sc03g0009380 Simmondsia chinensis HOM05D000839 ORTHO05D000664 2.2e-11 73.2 94 43.6
VMungo1127G1871 Vigna mungo HOM05D000839 ORTHO05D000664 2.2e-11 73.2 40 80.0
Carub.0003s2064 Capsella rubella HOM05D000839 ORTHO05D000664 2.8e-11 72.8 55 58.2
Duzib213G0406 Durio zibethinus HOM05D000839 ORTHO05D000664 2.8e-11 72.8 52 63.5
arahy.Tifrunner.gnm1.ann1.B79GCJ Arachis hypogaea HOM05D013884 ORTHO05D031603 3.7e-11 72.4 55 70.9
Haze_09577 Corylus avellana HOM05D000839 ORTHO05D000664 3.7e-11 72.4 51 62.7
PSO832G1601 Papaver somniferum HOM05D000839 ORTHO05D000664 3.7e-11 72.4 51 64.7
Psat7g160400 Pisum sativum HOM05D000050 ORTHO05D000664 3.7e-11 72.4 40 75.0
TAR629G0926 Trochodendron aralioides HOM05D000839 ORTHO05D000664 3.7e-11 72.4 53 64.2
arahy.Tifrunner.gnm1.ann1.D8KFWJ Arachis hypogaea HOM05D013884 ORTHO05D083209 4.8e-11 72.0 47 74.5
PGR083G0738 Punica granatum HOM05D000839 ORTHO05D000664 4.8e-11 72.0 38 78.9
COL.COLO4_09541 Corchorus olitorius HOM05D000839 ORTHO05D000664 6.3e-11 71.6 51 62.7
Haze_13041 Corylus avellana HOM05D000839 ORTHO05D000664 6.3e-11 71.6 50 64.0
Psat7g160200 Pisum sativum HOM05D000839 ORTHO05D000664 6.3e-11 71.6 40 75.0
CANSAT11G0476 Cannabis sativa HOM05D000839 ORTHO05D000664 8.2e-11 71.2 55 56.4
CsaV3_3G005710 Cucumis sativus L. HOM05D000839 ORTHO05D000664 8.2e-11 71.2 53 60.4
Medtr2g081930 Medicago truncatula HOM05D000839 ORTHO05D000664 8.2e-11 71.2 51 64.7
Cpa.g.sc80.119 Carica papaya HOM05D000839 ORTHO05D000664 1.1e-10 70.9 89 46.1
AUR62034194 Chenopodium quinoa HOM05D000839 ORTHO05D000664 1.1e-10 70.9 51 64.7
Thecc.07G059800 Theobroma cacao HOM05D000839 ORTHO05D000664 1.1e-10 70.9 54 59.3
Thecc.07G060600 Theobroma cacao HOM05D000839 ORTHO05D000664 1.1e-10 70.9 54 59.3
CiPaw.11G180700 Carya illinoinensis HOM05D000839 ORTHO05D000664 1.4e-10 70.5 51 62.7
Medtr2g081960 Medicago truncatula HOM05D000839 ORTHO05D000664 1.4e-10 70.5 55 60.0
Medtr4g081480 Medicago truncatula HOM05D000839 ORTHO05D000664 1.4e-10 70.5 40 75.0
TPR.G40680 Trifolium pratense HOM05D000839 ORTHO05D000664 1.4e-10 70.5 41 70.7
TAR627G0884 Trochodendron aralioides HOM05D000839 ORTHO05D000664 1.4e-10 70.5 54 57.4
CARHR096470 Cardamine hirsuta HOM05D000839 ORTHO05D000664 1.8e-10 70.1 54 55.6
Hma1.2p1_1054F.1_g252600 Hydrangea macrophylla HOM05D000839 ORTHO05D000664 1.8e-10 70.1 54 61.1
Lalb_Chr22g0357211 Lupinus albus HOM05D000839 ORTHO05D000664 1.8e-10 70.1 53 58.5
DCAR_022513 Daucus carota HOM05D000839 ORTHO05D000664 2.4e-10 69.7 50 60.0
Glyma.06G263400 Glycine max HOM05D000839 ORTHO05D000664 2.4e-10 69.7 41 73.2
Glyma.12G139000 Glycine max HOM05D000839 ORTHO05D000664 2.4e-10 69.7 54 61.1
MBI02_g26226_MAGBIO Magnolia biondii HOM05D000839 ORTHO05D000664 2.4e-10 69.7 40 75.0
Oeu060526.1 Olea europaea HOM05D000839 ORTHO05D000664 2.4e-10 69.7 52 59.6
AUR62029265 Chenopodium quinoa HOM05D000839 ORTHO05D000664 3.1e-10 69.3 51 62.7
Cc05_g13050 Coffea canephora HOM05D000839 ORTHO05D000664 3.1e-10 69.3 41 75.6
Gohir.A13G142500 Gossypium hirsutum HOM05D000839 ORTHO05D000664 3.1e-10 69.3 51 62.7
Gohir.D13G147200 Gossypium hirsutum HOM05D000839 ORTHO05D000664 3.1e-10 69.3 51 62.7
Lalb_Chr01g0006231 Lupinus albus HOM05D000839 ORTHO05D000664 3.1e-10 69.3 40 75.0
Peaxi162Scf01365g00033 Petunia axillaris HOM05D000839 ORTHO05D000664 3.1e-10 69.3 50 62.0
Actinidia35307 Actinidia chinensis HOM05D000839 ORTHO05D000664 4.1e-10 68.9 51 58.8
Dinv03957 Davidia involucrata HOM05D000839 ORTHO05D000664 4.1e-10 68.9 54 59.3
Gorai.013G165000 Gossypium raimondii HOM05D000839 ORTHO05D000664 4.1e-10 68.9 51 62.7
Ah.04g165140 Amaranthus hybridus HOM05D000839 ORTHO05D000664 5.3e-10 68.6 48 62.5
EL10Ac4g08002 Beta vulgaris HOM05D000839 ORTHO05D000664 5.3e-10 68.6 78 44.9
Oeu053389.1 Olea europaea HOM05D000839 ORTHO05D000664 5.3e-10 68.6 50 62.0
GSVIVG01014555001 Vitis vinifera HOM05D000839 ORTHO05D000664 5.3e-10 68.6 51 60.8
arahy.Tifrunner.gnm1.ann1.CXLP46 Arachis hypogaea HOM05D000839 ORTHO05D000664 6.9e-10 68.2 38 71.1
arahy.Tifrunner.gnm1.ann1.TJ87UR Arachis hypogaea HOM05D000839 ORTHO05D000664 6.9e-10 68.2 38 71.1
Ca_18837_v3 Cicer arietinum L. HOM05D000839 ORTHO05D000664 6.9e-10 68.2 40 72.5
Ca_30096_v3 Cicer arietinum L. HOM05D000839 ORTHO05D000664 6.9e-10 68.2 40 72.5
Psat5g249120 Pisum sativum HOM05D000839 ORTHO05D000664 6.9e-10 68.2 55 54.5
Sed0027275 Sechium edule HOM05D000839 ORTHO05D000664 6.9e-10 68.2 52 57.7
Sc03g0009450 Simmondsia chinensis HOM05D000839 ORTHO05D000664 1.2e-09 67.4 54 63.0
Cpa.g.sc80.120 Carica papaya HOM05D000839 ORTHO05D000664 1.5e-09 67.0 50 60.0
ClCG10G006180 Citrullus lanatus HOM05D000839 ORTHO05D000664 1.5e-09 67.0 52 57.7
MD11G1229700 Malus domestica HOM05D000839 ORTHO05D000664 1.5e-09 67.0 52 57.7
Sc03g0009370 Simmondsia chinensis HOM05D000839 ORTHO05D000664 1.5e-09 67.0 59 54.2
TPR.G33141 Trifolium pratense HOM05D000839 ORTHO05D000664 1.5e-09 67.0 47 66.0
TWI39G0042 Tripterygium wilfordii HOM05D000839 ORTHO05D000664 1.5e-09 67.0 76 47.4
TAR629G0964 Trochodendron aralioides HOM05D000839 ORTHO05D000664 1.5e-09 67.0 36 77.8
AL3G34560 Arabidopsis lyrata HOM05D000839 ORTHO05D000664 2.0e-09 66.6 50 60.0
AT3G20660 Arabidopsis thaliana HOM05D000839 ORTHO05D000664 2.0e-09 66.6 50 60.0
Thhalv10022015m.g Eutrema salsugineum HOM05D000839 ORTHO05D000664 2.0e-09 66.6 50 60.0
Gohir.A01G072400 Gossypium hirsutum HOM05D000839 ORTHO05D000664 2.0e-09 66.6 51 58.8
Sp3g18700 Schrenkiella parvula HOM05D000839 ORTHO05D000664 2.0e-09 66.6 50 60.0
RcHm_v2.0_Chr2g0132341 Rosa chinensis HOM05D000839 ORTHO05D000664 2.6e-09 66.2 93 43.0
arahy.Tifrunner.gnm1.ann1.R83HA9 Arachis hypogaea HOM05D000839 ORTHO05D000664 3.4e-09 65.9 49 61.2
AUR62029266 Chenopodium quinoa HOM05D000839 ORTHO05D000664 3.4e-09 65.9 51 58.8
Gohir.D01G059200 Gossypium hirsutum HOM05D000839 ORTHO05D000664 3.4e-09 65.9 37 73.0
Gorai.002G080200 Gossypium raimondii HOM05D000839 ORTHO05D000664 3.4e-09 65.9 37 73.0
HanXRQChr13g0407571 Helianthus annuus HOM05D000839 ORTHO05D000664 3.4e-09 65.9 50 58.0
MD03G1215000 Malus domestica HOM05D000839 ORTHO05D000664 3.4e-09 65.9 52 55.8
Sabra11G0117800 Salix brachista HOM05D000839 ORTHO05D000664 3.4e-09 65.9 50 62.0
THA.LOC104798782 Tarenaya hassleriana HOM05D000839 ORTHO05D000664 3.4e-09 65.9 38 68.4
Duzib213G0068 Durio zibethinus HOM05D000839 ORTHO05D000664 4.5e-09 65.5 53 58.5
Duzib268G0685 Durio zibethinus HOM05D000839 ORTHO05D000664 4.5e-09 65.5 38 71.1
Nitab4.5_0012729g0010 Nicotiana tabacum HOM05D000839 ORTHO05D000664 4.5e-09 65.5 51 58.8
QL08p014425 Quercus lobata HOM05D000839 ORTHO05D000664 4.5e-09 65.5 38 71.1
Aa31LG8G7450 Aethionema arabicum HOM05D000839 ORTHO05D000664 5.9e-09 65.1 47 59.6
Ciclev10007977m.g Citrus clementina HOM05D000839 ORTHO05D000664 5.9e-09 65.1 50 60.0
arahy.Tifrunner.gnm1.ann1.XD3Y5M Arachis hypogaea HOM05D013884 ORTHO05D031603 7.7e-09 64.7 69 60.9
BcaB06g26133 Brassica carinata HOM05D000839 ORTHO05D000664 7.7e-09 64.7 50 58.0
BcaC05g28295 Brassica carinata HOM05D000839 ORTHO05D000664 7.7e-09 64.7 50 58.0
A05p28130 Brassica napus HOM05D000839 ORTHO05D000664 7.7e-09 64.7 50 58.0
C05p43580 Brassica napus HOM05D000839 ORTHO05D000664 7.7e-09 64.7 50 58.0
BolC5t33079H Brassica oleracea HOM05D000839 ORTHO05D000664 7.7e-09 64.7 50 58.0
BraA05t21695Z Brassica rapa HOM05D000839 ORTHO05D000664 7.7e-09 64.7 50 58.0
CDE05G1178 Ceratophyllum demersum HOM05D000839 ORTHO05D000664 7.7e-09 64.7 49 57.1
Potri.011G130533 Populus trichocarpa HOM05D000839 ORTHO05D000664 7.7e-09 64.7 50 60.0
arahy.Tifrunner.gnm1.ann1.DYE5XP Arachis hypogaea HOM05D000839 ORTHO05D000664 1.0e-08 64.3 49 59.2
FvH4_6g28280 Fragaria vesca HOM05D000839 ORTHO05D000664 1.0e-08 64.3 50 62.0
FAN02G4158 Fragaria x ananassa HOM05D000839 ORTHO05D000664 1.0e-08 64.3 50 62.0
FAN09G1383 Fragaria x ananassa HOM05D000839 ORTHO05D000664 1.0e-08 64.3 50 62.0
Nitab4.5_0000552g0070 Nicotiana tabacum HOM05D000839 ORTHO05D000664 1.0e-08 64.3 51 56.9
Nitab4.5_0003620g0020 Nicotiana tabacum HOM05D000839 ORTHO05D000664 1.0e-08 64.3 51 56.9
Nn1g06925 Nelumbo nucifera HOM05D000839 ORTHO05D000664 1.7e-08 63.5 35 77.1
SGA_v2.0_scaffold495G52453 Striga asiatica HOM05D000839 ORTHO05D000664 1.7e-08 63.5 49 57.1
HPP92_016322 Vanilla planifolia HOM05D000839 ORTHO05D000664 1.7e-08 63.5 100 43.0
HanXRQChr11g0332741 Helianthus annuus HOM05D000839 ORTHO05D000664 2.2e-08 63.2 52 53.8
Manes.03G120832 Manihot esculenta HOM05D000839 ORTHO05D000664 2.2e-08 63.2 93 36.6
SEGI_05962 Sequoiadendron giganteum HOM05D000839 ORTHO05D000664 2.2e-08 63.2 46 63.0
Aqoxy1G03828 Aquilegia oxysepala HOM05D000839 ORTHO05D000664 2.9e-08 62.8 53 56.6
FAN14G0047 Fragaria x ananassa HOM05D000839 ORTHO05D000664 2.9e-08 62.8 50 60.0
unitig_747.g21561 Utricularia gibba HOM05D000839 ORTHO05D000664 3.8e-08 62.4 34 73.5
CAN.G162.138 Capsicum annuum HOM05D000839 ORTHO05D000664 5.0e-08 62.0 50 60.0
Lalb_Chr22g0357301 Lupinus albus HOM05D000839 ORTHO05D000664 6.5e-08 61.6 41 63.4
ECA236G4908 Erigeron canadensis HOM05D000839 ORTHO05D000664 8.5e-08 61.2 55 52.7
Peaxi162Scf00000g00814 Petunia axillaris HOM05D000839 ORTHO05D000664 8.5e-08 61.2 37 64.9
Sc03g0009360 Simmondsia chinensis HOM05D000839 ORTHO05D000664 8.5e-08 61.2 54 55.6
Sopen07g032070 Solanum pennellii HOM05D000839 ORTHO05D000664 1.1e-07 60.8 51 52.9
PGSC0003DMG400019233 Solanum tuberosum HOM05D000839 ORTHO05D000664 1.1e-07 60.8 51 51.0
Solyc07g063930.4 Solanum lycopersicum HOM05D000839 ORTHO05D000664 1.9e-07 60.1 51 52.9
ClCG05G014930 Citrullus lanatus HOM05D000839 ORTHO05D000664 2.5e-07 59.7 51 56.9
Lalb_Chr22g0357231 Lupinus albus HOM05D000839 ORTHO05D000664 2.5e-07 59.7 41 61.0
arahy.Tifrunner.gnm1.ann1.34AJS2 Arachis hypogaea HOM05D013884 ORTHO05D085832 4.2e-07 58.9 32 81.2
Lsat_1_v5_gn_7_107740 Lactuca sativa HOM05D000839 ORTHO05D000664 5.5e-07 58.5 51 52.9
Lsat_1_v5_gn_9_94921 Lactuca sativa HOM05D000839 ORTHO05D000664 5.5e-07 58.5 50 48.0
SEGI_23139 Sequoiadendron giganteum HOM05D000839 ORTHO05D000664 9.4e-07 57.8 34 70.6
arahy.Tifrunner.gnm1.ann1.TR51Z4 Arachis hypogaea HOM05D006252 ORTHO05D007909 1.2e-06 57.4 30 86.7
CAN.G162.136 Capsicum annuum HOM05D000839 ORTHO05D000664 1.2e-06 57.4 54 48.1
Glyma.12G216400 Glycine max HOM05D000839 ORTHO05D000664 1.6e-06 57.0 46 56.5
Lj1C861T17 Lonicera japonica HOM05D000839 ORTHO05D000664 1.6e-06 57.0 56 50.0
Eucgr.F01005 Eucalyptus grandis HOM05D000839 ORTHO05D000664 2.1e-06 56.6 29 82.8
HPP92_004143 Vanilla planifolia HOM05D000839 ORTHO05D000664 2.1e-06 56.6 34 67.6
Lalb_Chr22g0357221 Lupinus albus HOM05D000839 ORTHO05D000664 2.7e-06 56.2 41 61.0
MELO3C018145.2 Cucumis melo HOM05D000839 ORTHO05D000664 4.7e-06 55.5 51 54.9
ECA236G0906 Erigeron canadensis HOM05D000839 ORTHO05D000664 4.7e-06 55.5 51 51.0
Ca_01782_v3 Cicer arietinum L. HOM05D000839 ORTHO05D000664 6.1e-06 55.1 53 47.2
FAN05G2495 Fragaria x ananassa HOM05D000839 ORTHO05D000664 6.1e-06 55.1 43 62.8
Sed0004837 Sechium edule HOM05D000839 ORTHO05D000664 6.1e-06 55.1 51 47.1
CsaV3_3G022710 Cucumis sativus L. HOM05D000839 ORTHO05D000664 7.9e-06 54.7 34 64.7
TAR371G1201 Trochodendron aralioides HOM05D000839 ORTHO05D000664 7.9e-06 54.7 167 29.3


User provided reference genes

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