Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.PHUB4S Arachis hypogaea HOM05D004730 ORTHO05D005705 1.9e-33 145.2 69 100.0
arahy.Tifrunner.gnm1.ann1.DU0G1C Arachis hypogaea HOM05D004730 ORTHO05D005705 2.3e-31 138.3 68 94.1
arahy.Tifrunner.gnm1.ann1.EBD5YY Arachis hypogaea HOM05D004730 ORTHO05D005705 2.3e-31 138.3 68 94.1
Medtr3g018770 Medicago truncatula HOM05D004730 ORTHO05D005705 2.3e-31 138.3 68 94.1
VMungo1080G1812 Vigna mungo HOM05D004730 ORTHO05D005705 8.6e-31 136.3 68 92.6
Ca_26830_v3 Cicer arietinum L. HOM05D004730 ORTHO05D005705 2.5e-30 134.8 68 91.2
Glyma.04G141000 Glycine max HOM05D004730 ORTHO05D005705 2.5e-30 134.8 68 91.2
Glyma.11G153900 Glycine max HOM05D004730 ORTHO05D005705 2.5e-30 134.8 68 91.2
Lj3g0019549 Lotus japonicus HOM05D004730 ORTHO05D005705 2.5e-30 134.8 68 92.6
Lalb_Chr21g0314351 Lupinus albus HOM05D004730 ORTHO05D005705 2.5e-30 134.8 68 91.2
Phvul.005G029900 Phaseolus vulgaris HOM05D004730 ORTHO05D005705 2.5e-30 134.8 68 91.2
TPR.G9866 Trifolium pratense HOM05D004730 ORTHO05D005705 2.5e-30 134.8 68 91.2
FvH4_7g16330 Fragaria vesca HOM05D004730 ORTHO05D005705 7.3e-30 133.3 68 89.7
FAN01G0353 Fragaria x ananassa HOM05D004730 ORTHO05D005705 7.3e-30 133.3 68 89.7
FAN03G1043 Fragaria x ananassa HOM05D004730 ORTHO05D005705 7.3e-30 133.3 68 89.7
FAN06G3857 Fragaria x ananassa HOM05D004730 ORTHO05D005705 7.3e-30 133.3 68 89.7
FAN06G4548 Fragaria x ananassa HOM05D004730 ORTHO05D005705 7.3e-30 133.3 68 89.7
FAN10G2003 Fragaria x ananassa HOM05D004730 ORTHO05D005705 7.3e-30 133.3 68 89.7
FAN10G3709 Fragaria x ananassa HOM05D004730 ORTHO05D005705 7.3e-30 133.3 68 89.7
Ciclev10019746m.g Citrus clementina HOM05D004730 ORTHO05D005705 1.2e-29 132.5 68 88.2
GSVIVG01027092001 Vitis vinifera HOM05D004730 ORTHO05D005705 1.2e-29 132.5 68 89.7
Eucgr.D02369 Eucalyptus grandis HOM05D004730 ORTHO05D005705 1.6e-29 132.1 68 89.7
Prupe.2G187200 Prunus persica HOM05D004730 ORTHO05D005705 2.8e-29 131.3 68 88.2
RcHm_v2.0_Chr1g0359341 Rosa chinensis HOM05D004730 ORTHO05D005705 8.1e-29 129.8 68 86.8
Atru.chr5.659 Acer truncatum HOM05D004730 ORTHO05D005705 1.8e-28 128.6 68 88.2
SalBow3G2618 Salvia bowleyana HOM05D004730 ORTHO05D005705 1.8e-28 128.6 68 85.3
THA.LOC104817359 Tarenaya hassleriana HOM05D004730 ORTHO05D005705 1.8e-28 128.6 68 88.2
Nn1g01877 Nelumbo nucifera HOM05D004730 ORTHO05D005705 3.1e-28 127.9 68 85.3
Duzib138G0598 Durio zibethinus HOM05D004730 ORTHO05D005705 4.0e-28 127.5 68 86.8
Gorai.004G152100 Gossypium raimondii HOM05D004730 ORTHO05D005705 4.0e-28 127.5 68 85.3
PSO339G2575 Papaver somniferum HOM05D004730 ORTHO05D005705 4.0e-28 127.5 68 85.3
Cpa.g.sc96.5 Carica papaya HOM05D004730 ORTHO05D005705 5.2e-28 127.1 68 86.8
Rhsim07G0004700 Rhododendron simsii HOM05D004730 ORTHO05D005705 5.2e-28 127.1 68 83.8
vmacro13156 Vaccinium macrocarpon HOM05D004730 ORTHO05D005705 5.2e-28 127.1 68 83.8
Lsat_1_v5_gn_3_139961 Lactuca sativa HOM05D004730 ORTHO05D005705 6.8e-28 126.7 68 83.8
Gohir.D08G146500 Gossypium hirsutum HOM05D004730 ORTHO05D005705 8.9e-28 126.3 68 83.8
MD07G1148700 Malus domestica HOM05D004730 ORTHO05D005705 8.9e-28 126.3 68 86.8
PSO210G5634 Papaver somniferum HOM05D004730 ORTHO05D005705 8.9e-28 126.3 68 83.8
PGR031G3931 Punica granatum HOM05D004730 ORTHO05D005705 8.9e-28 126.3 68 85.3
MBI06_g08459_MAGBIO Magnolia biondii HOM05D004730 ORTHO05D005705 1.2e-27 125.9 68 82.4
MBI06_g41841_MAGBIO Magnolia biondii HOM05D004730 ORTHO05D005705 1.2e-27 125.9 68 82.4
SGA_v2.0_scaffold5G03013 Striga asiatica HOM05D004730 ORTHO05D005705 1.2e-27 125.9 68 83.8
Actinidia10133 Actinidia chinensis HOM05D004730 ORTHO05D005705 1.5e-27 125.6 68 85.3
Thecc.01G343400 Theobroma cacao HOM05D004730 ORTHO05D005705 1.5e-27 125.6 68 85.3
unitig_62.g23797 Utricularia gibba HOM05D004730 ORTHO05D005705 1.5e-27 125.6 68 86.8
Potri.002G170100 Populus trichocarpa HOM05D004730 ORTHO05D005705 2.6e-27 124.8 68 86.8
Nitab4.5_0000258g0150 Nicotiana tabacum HOM05D004730 ORTHO05D005705 3.4e-27 124.4 68 83.8
Nitab4.5_0004506g0070 Nicotiana tabacum HOM05D004730 ORTHO05D005705 3.4e-27 124.4 68 83.8
Aqoxy2G00449 Aquilegia oxysepala HOM05D004730 ORTHO05D005705 4.4e-27 124.0 68 85.3
BcaC08g45152 Brassica carinata HOM05D004730 ORTHO05D005705 4.4e-27 124.0 68 82.4
A07p25690 Brassica napus HOM05D004730 ORTHO05D005705 4.4e-27 124.0 68 82.4
C06p27700 Brassica napus HOM05D004730 ORTHO05D005705 4.4e-27 124.0 68 82.4
C06p27860 Brassica napus HOM05D004730 ORTHO05D005705 4.4e-27 124.0 68 82.4
BolC6t37941H Brassica oleracea HOM05D004730 ORTHO05D005705 4.4e-27 124.0 68 82.4
BraA07t30209Z Brassica rapa HOM05D004730 ORTHO05D005705 4.4e-27 124.0 68 82.4
MELO3C022308.2 Cucumis melo HOM05D004730 ORTHO05D005705 5.8e-27 123.6 68 83.8
Thhalv10005894m.g Eutrema salsugineum HOM05D004730 ORTHO05D005705 5.8e-27 123.6 68 83.8
Gohir.A08G125600 Gossypium hirsutum HOM05D004730 ORTHO05D005705 5.8e-27 123.6 68 83.8
HanXRQChr11g0353001 Helianthus annuus HOM05D004730 ORTHO05D005705 5.8e-27 123.6 68 82.4
Oeu019761.1 Olea europaea HOM05D004730 ORTHO05D005705 9.9e-27 122.9 68 82.4
COL.COLO4_06293 Corchorus olitorius HOM05D004730 ORTHO05D005705 1.3e-26 122.5 68 83.8
PGSC0003DMG400017986 Solanum tuberosum HOM05D004730 ORTHO05D005705 1.3e-26 122.5 68 80.9
Carub.0003s3432 Capsella rubella HOM05D004730 ORTHO05D005705 1.7e-26 122.1 68 82.4
Carub.0005s2846 Capsella rubella HOM05D004730 ORTHO05D005705 1.7e-26 122.1 68 82.4
Cc02_g39260 Coffea canephora HOM05D004730 ORTHO05D005705 1.7e-26 122.1 68 82.4
Solyc05g050390.4 Solanum lycopersicum HOM05D004730 ORTHO05D005705 1.7e-26 122.1 68 80.9
Sopen05g028800 Solanum pennellii HOM05D004730 ORTHO05D005705 1.7e-26 122.1 68 80.9
TAR374G1455 Trochodendron aralioides HOM05D004730 ORTHO05D005705 1.7e-26 122.1 68 82.4
Oeu015369.3 Olea europaea HOM05D004730 ORTHO05D005705 2.2e-26 121.7 68 82.4
CARHR172020 Cardamine hirsuta HOM05D004730 ORTHO05D005705 2.9e-26 121.3 68 80.9
DCAR_005384 Daucus carota HOM05D004730 ORTHO05D005705 2.9e-26 121.3 68 82.4
Sp5g01680 Schrenkiella parvula HOM05D004730 ORTHO05D005705 3.8e-26 120.9 68 82.4
AL5G44220 Arabidopsis lyrata HOM05D004730 ORTHO05D005705 4.9e-26 120.6 68 80.9
CAN.G239.1 Capsicum annuum HOM05D004730 ORTHO05D005705 4.9e-26 120.6 68 80.9
CsaV3_6G008300 Cucumis sativus L. HOM05D004730 ORTHO05D005705 4.9e-26 120.6 68 80.9
Actinidia20236 Actinidia chinensis HOM05D004730 ORTHO05D005705 6.4e-26 120.2 68 80.9
EL10Ac1g00278 Beta vulgaris HOM05D004730 ORTHO05D005705 6.4e-26 120.2 68 77.9
Migut.B01859 Erythranthe guttata HOM05D004730 ORTHO05D005705 6.4e-26 120.2 68 79.4
Aa31LG10G15710 Aethionema arabicum HOM05D004730 ORTHO05D005705 8.4e-26 119.8 68 77.9
CSS0011474 Camellia sinensis var. sinensis HOM05D004730 ORTHO05D005705 8.4e-26 119.8 68 80.9
Ah.05g179630 Amaranthus hybridus HOM05D004730 ORTHO05D005705 1.1e-25 119.4 68 77.9
MSTRG.17337 Avicennia marina HOM05D004730 ORTHO05D005705 1.1e-25 119.4 68 80.9
CDE05G0988 Ceratophyllum demersum HOM05D004730 ORTHO05D005705 1.1e-25 119.4 68 82.4
AUR62004484 Chenopodium quinoa HOM05D004730 ORTHO05D005705 1.1e-25 119.4 68 77.9
AUR62023469 Chenopodium quinoa HOM05D004730 ORTHO05D005705 1.1e-25 119.4 68 77.9
Peaxi162Scf00403g00522 Petunia axillaris HOM05D004730 ORTHO05D005705 1.1e-25 119.4 68 80.9
ECA248G0182 Erigeron canadensis HOM05D004730 ORTHO05D005705 1.4e-25 119.0 68 80.9
MD01G1079900 Malus domestica HOM05D004730 ORTHO05D005705 1.4e-25 119.0 68 83.8
Hund16708 Selenicereus undatus HOM05D004730 ORTHO05D005705 1.9e-25 118.6 68 77.9
PGR031G3051 Punica granatum HOM05D004730 ORTHO05D005705 3.2e-25 117.9 68 80.9
SHI13286 Sapria himalayana HOM05D004730 ORTHO05D005705 4.1e-25 117.5 68 80.9
Sc23g0002110 Simmondsia chinensis HOM05D004730 ORTHO05D005705 4.1e-25 117.5 68 77.9
CiPaw.01G075800 Carya illinoinensis HOM05D004730 ORTHO05D005705 5.4e-25 117.1 68 80.9
Sed0022953 Sechium edule HOM05D004730 ORTHO05D005705 5.4e-25 117.1 68 79.4
Cfa003807 Carpinus fangiana HOM05D004730 ORTHO05D005705 7.1e-25 116.7 68 80.9
Sc01g0002740 Simmondsia chinensis HOM05D004730 ORTHO05D005705 9.2e-25 116.3 68 76.5
ATR0213G028 Amborella trichopoda HOM05D004730 ORTHO05D005705 1.6e-24 115.5 68 79.4
CANSAT56G1965 Cannabis sativa HOM05D004730 ORTHO05D005705 2.1e-24 115.2 68 77.9
CANSAT56G2405 Cannabis sativa HOM05D004730 ORTHO05D005705 2.1e-24 115.2 68 77.9
TWI23G0180 Tripterygium wilfordii HOM05D004730 ORTHO05D005705 3.5e-24 114.4 77 70.1
Pp3c1_21510 Physcomitrium patens HOM05D004730 ORTHO05D005705 6.0e-24 113.6 68 75.0
Pp3c10_4130 Physcomitrium patens HOM05D004730 ORTHO05D005705 1.7e-23 112.1 68 72.1
Mapoly0091s0016 Marchantia polymorpha HOM05D004730 ORTHO05D005705 2.3e-23 111.7 68 72.1
HPP92_011453 Vanilla planifolia HOM05D004730 ORTHO05D005705 2.3e-23 111.7 68 75.0
TWI59G0293 Tripterygium wilfordii HOM05D004730 ORTHO05D005705 5.1e-23 110.5 78 66.7
ATR0213G009 Amborella trichopoda HOM05D004730 ORTHO05D005705 6.6e-23 110.2 71 76.1
SEGI_06994 Sequoiadendron giganteum HOM05D004730 ORTHO05D005705 2.5e-22 108.2 68 69.1
CARHR263800 Cardamine hirsuta HOM05D004730 ORTHO05D005705 3.3e-22 107.8 69 73.9
Aa31LG1G27820 Aethionema arabicum HOM05D004730 ORTHO05D005705 4.3e-22 107.5 68 73.5
Sabra02G0142200 Salix brachista HOM05D004730 ORTHO05D005705 4.3e-22 107.5 105 56.2
Lj7C501G3 Lonicera japonica HOM05D004730 ORTHO05D005705 3.6e-21 104.4 76 68.4
AagrBONN_evm.TU.Sc2ySwM_344.2008 Anthoceros agrestis HOM05D004730 ORTHO05D005705 4.7e-21 104.0 68 67.6
Hma1.2p1_0295F.1_g116660 Hydrangea macrophylla HOM05D004730 ORTHO05D005705 4.7e-21 104.0 112 50.9
Os01g0681400 Oryza sativa ssp. japonica HOM05D004730 ORTHO05D005705 1.4e-20 102.4 68 70.6
Os03g0258500 Oryza sativa ssp. japonica HOM05D004730 ORTHO05D005705 1.4e-20 102.4 68 70.6
Zm00001eb142950 Zea mays HOM05D004730 ORTHO05D005705 6.9e-20 100.1 68 67.6
MBI01_g11796_MAGBIO Magnolia biondii HOM05D004730 ORTHO05D005705 1.2e-19 99.4 68 69.1
Haze_15648 Corylus avellana HOM05D004730 ORTHO05D005705 2.6e-19 98.2 99 54.5
CBR_g66692 Chara braunii HOM05D004730 ORTHO05D005705 5.8e-19 97.1 68 61.8
Os03g0644000 Oryza sativa ssp. japonica HOM05D004730 ORTHO05D005705 9.9e-19 96.3 68 64.7
SMO114G0122 Selaginella moellendorffii HOM05D004730 ORTHO05D005705 1.3e-18 95.9 68 63.2
Zm00001eb364100 Zea mays HOM05D004730 ORTHO05D005705 7.1e-17 90.1 68 61.8
GSVIVG01027089001 Vitis vinifera HOM05D004730 ORTHO05D005705 9.0e-12 73.2 45 77.8
Duzib133G1016 Durio zibethinus HOM05D004730 ORTHO05D005705 1.3e-10 69.3 33 93.9
arahy.Tifrunner.gnm1.ann1.CLZ951 Arachis hypogaea HOM05D004730 ORTHO05D005705 1.7e-10 68.9 35 88.6
CDE08G1494 Ceratophyllum demersum HOM05D004730 ORTHO05D005705 3.8e-10 67.8 38 81.6
Cre01.g020264 Chlamydomonas reinhardtii HOM05D004730 ORTHO05D005705 8.4e-10 66.6 69 49.3
arahy.Tifrunner.gnm1.ann1.VTA1BU Arachis hypogaea HOM05D004730 ORTHO05D005705 2.7e-08 61.6 30 90.0
Rhsim01G0172100 Rhododendron simsii HOM05D004730 ORTHO05D005705 2.7e-08 61.6 43 62.8
Manes.01G246700 Manihot esculenta HOM05D004730 ORTHO05D005705 4.6e-08 60.8 35 80.0
AT3G61710 Arabidopsis thaliana HOM05D004730 ORTHO05D005705 1.8e-07 58.9 35 71.4
MCO03G136 Micromonas commoda HOM05D004730 ORTHO05D005705 2.3e-07 58.5 68 45.6
vmacro12679 Vaccinium macrocarpon HOM05D004730 ORTHO05D005705 3.9e-07 57.8 36 72.2


User provided reference genes

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