Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.PH9A9F Arachis hypogaea HOM05D007200 ORTHO05D009030 3.8e-141 505.0 281 100.0
arahy.Tifrunner.gnm1.ann1.H2XQXC Arachis hypogaea HOM05D007200 ORTHO05D009030 1.3e-138 496.5 282 98.9
VMungo0720G1786 Vigna mungo HOM05D007200 ORTHO05D009030 2.9e-109 399.1 246 80.9
Phvul.007G196200 Phaseolus vulgaris HOM05D007200 ORTHO05D009030 7.2e-108 394.4 246 79.7
Glyma.10G153100 Glycine max HOM05D007200 ORTHO05D009030 3.6e-107 392.1 245 80.0
Medtr1g083110 Medicago truncatula HOM05D007200 ORTHO05D009030 1.8e-103 379.8 248 77.4
Ciclev10002020m.g Citrus clementina HOM05D007200 ORTHO05D009030 1.2e-102 377.1 256 73.4
FvH4_6g06280 Fragaria vesca HOM05D007200 ORTHO05D009030 1.5e-102 376.7 255 74.1
CANSAT54G2021 Cannabis sativa HOM05D007200 ORTHO05D009030 3.4e-102 375.6 248 74.6
FAN14G1797 Fragaria x ananassa HOM05D007200 ORTHO05D009030 5.9e-102 374.8 255 73.7
TPR.G6036 Trifolium pratense HOM05D007200 ORTHO05D009030 5.9e-102 374.8 248 75.4
RcHm_v2.0_Chr3g0455321 Rosa chinensis HOM05D007200 ORTHO05D009030 7.7e-102 374.4 253 74.3
Psat6g149880 Pisum sativum HOM05D007200 ORTHO05D009030 2.2e-101 372.9 248 76.6
Lj5g0005198 Lotus japonicus HOM05D007200 ORTHO05D009030 2.9e-101 372.5 239 79.9
GSVIVG01031113001 Vitis vinifera HOM05D007200 ORTHO05D009030 5.0e-101 371.7 251 76.1
Prupe.6G323000 Prunus persica HOM05D007200 ORTHO05D009030 6.5e-101 371.3 248 75.0
Lalb_Chr21g0310651 Lupinus albus HOM05D007200 ORTHO05D009030 2.1e-99 366.3 246 76.4
Lj9C128T5 Lonicera japonica HOM05D007200 ORTHO05D009030 3.6e-99 365.5 246 74.0
FAN09G0829 Fragaria x ananassa HOM05D007200 ORTHO05D009030 3.3e-97 359.0 255 71.0
Nn3g21404 Nelumbo nucifera HOM05D007200 ORTHO05D009030 3.3e-97 359.0 250 72.8
QL03p012758 Quercus lobata HOM05D007200 ORTHO05D009030 7.4e-97 357.8 250 72.0
Manes.08G119500 Manihot esculenta HOM05D007200 ORTHO05D009030 9.7e-97 357.5 247 74.1
TWI12G0470 Tripterygium wilfordii HOM05D007200 ORTHO05D009030 9.7e-97 357.5 249 72.3
MD12G1216700 Malus domestica HOM05D007200 ORTHO05D009030 1.3e-96 357.1 253 70.4
Cpa.g.sc48.76 Carica papaya HOM05D007200 ORTHO05D009030 4.8e-96 355.1 247 71.3
Aqoxy5G00700 Aquilegia oxysepala HOM05D007200 ORTHO05D009030 6.3e-96 354.8 248 71.0
Haze_04164 Corylus avellana HOM05D007200 ORTHO05D009030 6.3e-96 354.8 251 70.5
Lsat_1_v5_gn_9_87521 Lactuca sativa HOM05D007200 ORTHO05D009030 8.2e-96 354.4 246 72.0
TAR365G0906 Trochodendron aralioides HOM05D007200 ORTHO05D009030 1.1e-95 354.0 252 71.0
Lj9C124T9 Lonicera japonica HOM05D007200 ORTHO05D009030 1.4e-95 353.6 270 67.4
TAR365G0308 Trochodendron aralioides HOM05D007200 ORTHO05D009030 1.4e-95 353.6 252 71.0
AUR62005175 Chenopodium quinoa HOM05D007200 ORTHO05D009030 1.8e-95 353.2 249 70.3
AUR62000793 Chenopodium quinoa HOM05D007200 ORTHO05D009030 6.9e-95 351.3 250 70.4
Rhsim05G0141700 Rhododendron simsii HOM05D007200 ORTHO05D009030 6.9e-95 351.3 251 70.9
HanXRQChr11g0339441 Helianthus annuus HOM05D007200 ORTHO05D009030 2.6e-94 349.4 237 74.7
Cfa006611 Carpinus fangiana HOM05D007200 ORTHO05D009030 3.4e-94 349.0 249 70.3
Sabra05G0032400 Salix brachista HOM05D007200 ORTHO05D009030 7.7e-94 347.8 251 71.3
CARHR079750 Cardamine hirsuta HOM05D007200 ORTHO05D009030 1.0e-93 347.4 249 68.7
Atru.chr12.1493 Acer truncatum HOM05D007200 ORTHO05D009030 3.8e-93 345.5 249 70.3
CiPaw.07G020000 Carya illinoinensis HOM05D007200 ORTHO05D009030 8.5e-93 344.4 250 70.4
Eucgr.B01933 Eucalyptus grandis HOM05D007200 ORTHO05D009030 8.5e-93 344.4 248 68.5
Nitab4.5_0002420g0030 Nicotiana tabacum HOM05D007200 ORTHO05D009030 1.1e-92 344.0 249 70.3
Carub.0003s0469 Capsella rubella HOM05D007200 ORTHO05D009030 2.5e-92 342.8 248 68.1
Sp3g04270 Schrenkiella parvula HOM05D007200 ORTHO05D009030 4.2e-92 342.0 249 68.3
AL3G15960 Arabidopsis lyrata HOM05D007200 ORTHO05D009030 5.5e-92 341.7 249 68.3
AT3G05410 Arabidopsis thaliana HOM05D007200 ORTHO05D009030 5.5e-92 341.7 249 68.3
Aa31LG5G15970 Aethionema arabicum HOM05D007200 ORTHO05D009030 1.6e-91 340.1 249 67.1
Duzib177G0869 Durio zibethinus HOM05D007200 ORTHO05D009030 1.6e-91 340.1 252 71.0
Thhalv10021289m.g Eutrema salsugineum HOM05D007200 ORTHO05D009030 2.7e-91 339.3 249 67.5
Peaxi162Scf00071g00636 Petunia axillaris HOM05D007200 ORTHO05D009030 2.7e-91 339.3 246 70.3
PGR083G0889 Punica granatum HOM05D007200 ORTHO05D009030 3.6e-91 339.0 249 67.9
Actinidia24645 Actinidia chinensis HOM05D007200 ORTHO05D009030 1.0e-90 337.4 252 69.4
DCAR_001939 Daucus carota HOM05D007200 ORTHO05D009030 1.8e-90 336.7 245 69.0
BcaC05g30148 Brassica carinata HOM05D007200 ORTHO05D009030 2.3e-90 336.3 249 66.7
vmacro19623 Vaccinium macrocarpon HOM05D007200 ORTHO05D009030 2.3e-90 336.3 241 71.4
BraA05t23030Z Brassica rapa HOM05D007200 ORTHO05D009030 3.9e-90 335.5 249 66.7
COL.COLO4_10491 Corchorus olitorius HOM05D007200 ORTHO05D009030 5.2e-90 335.1 252 69.8
THA.LOC104818708 Tarenaya hassleriana HOM05D007200 ORTHO05D009030 5.2e-90 335.1 248 67.7
Ah.04g160430 Amaranthus hybridus HOM05D007200 ORTHO05D009030 6.7e-90 334.7 239 68.6
BcaC05g30124 Brassica carinata HOM05D007200 ORTHO05D009030 8.8e-90 334.3 249 66.3
BolC5t34842H Brassica oleracea HOM05D007200 ORTHO05D000438 1.1e-89 334.0 249 66.3
CSS0011307 Camellia sinensis var. sinensis HOM05D007200 ORTHO05D009030 2.0e-89 333.2 252 69.0
Thecc.05G310900 Theobroma cacao HOM05D007200 ORTHO05D009030 4.4e-89 332.0 252 69.8
ECA236G3394 Erigeron canadensis HOM05D007200 ORTHO05D009030 7.4e-89 331.3 240 69.2
CAN.G321.37 Capsicum annuum HOM05D007200 ORTHO05D009030 4.8e-88 328.6 249 67.1
Gohir.A11G266300 Gossypium hirsutum HOM05D007200 ORTHO05D009030 4.8e-88 328.6 253 68.8
Sed0020284 Sechium edule HOM05D007200 ORTHO05D009030 1.1e-87 327.4 252 66.3
PGSC0003DMG400007427 Solanum tuberosum HOM05D007200 ORTHO05D009030 1.8e-87 326.6 248 67.3
Gohir.D11G276600 Gossypium hirsutum HOM05D007200 ORTHO05D009030 7.0e-87 324.7 253 68.0
Gorai.007G298700 Gossypium raimondii HOM05D007200 ORTHO05D009030 7.0e-87 324.7 253 68.0
CsaV3_2G006520 Cucumis sativus L. HOM05D007200 ORTHO05D009030 9.1e-87 324.3 251 66.1
Solyc11g008480.2 Solanum lycopersicum HOM05D007200 ORTHO05D009030 1.3e-85 320.5 246 65.9
Sopen11g004260 Solanum pennellii HOM05D007200 ORTHO05D009030 1.3e-85 320.5 246 65.9
BcaC05g30126 Brassica carinata HOM05D007200 ORTHO05D009030 1.7e-85 320.1 239 65.7
MELO3C004233.2 Cucumis melo HOM05D007200 ORTHO05D009030 2.2e-85 319.7 254 65.4
Migut.O00553 Erythranthe guttata HOM05D007200 ORTHO05D009030 3.8e-85 318.9 244 67.6
Nitab4.5_0009303g0010 Nicotiana tabacum HOM05D007200 ORTHO05D009030 8.5e-85 317.8 239 68.6
FAN02G4393 Fragaria x ananassa HOM05D007200 ORTHO05D009030 1.1e-84 317.4 236 67.8
Migut.N01991 Erythranthe guttata HOM05D007200 ORTHO05D009030 1.9e-84 316.6 244 67.2
EL10Ac4g09392 Beta vulgaris HOM05D007200 ORTHO05D009030 3.2e-84 315.8 249 63.9
CANSAT54G2778 Cannabis sativa HOM05D007200 ORTHO05D009030 3.6e-83 312.4 216 70.8
FAN05G3823 Fragaria x ananassa HOM05D000179 ORTHO05D009030 5.2e-82 308.5 225 69.8
Cc02_g31060 Coffea canephora HOM05D007200 ORTHO05D009030 2.6e-81 306.2 251 64.5
MSTRG.27987 Avicennia marina HOM05D007200 ORTHO05D009030 2.4e-79 299.7 244 65.6
Zm00001eb142170 Zea mays HOM05D007200 ORTHO05D009030 7.7e-78 294.7 250 60.4
MBI19_g12813_MAGBIO Magnolia biondii HOM05D007200 ORTHO05D009030 1.3e-77 293.9 228 68.9
SGA_v2.0_scaffold98G29315 Striga asiatica HOM05D007200 ORTHO05D009030 1.1e-76 290.8 245 63.7
ClCG02G015570 Citrullus lanatus HOM05D007200 ORTHO05D009030 7.2e-76 288.1 254 60.2
PSO210G0998 Papaver somniferum HOM05D007200 ORTHO05D009030 2.1e-75 286.6 253 60.1
ATR0706G032 Amborella trichopoda HOM05D007200 ORTHO05D009030 3.6e-75 285.8 248 57.7
PSO832G2855 Papaver somniferum HOM05D007200 ORTHO05D009030 1.3e-72 277.3 253 60.1
unitig_746.g26859 Utricularia gibba HOM05D004477 ORTHO05D005615 1.3e-72 277.3 244 59.8
CDE02G3507 Ceratophyllum demersum HOM05D007200 ORTHO05D009030 2.0e-70 270.0 256 55.9
Potri.005G027100 Populus trichocarpa HOM05D007200 ORTHO05D009030 5.2e-66 255.4 187 74.3
HPP92_006928 Vanilla planifolia HOM05D000065 ORTHO05D001606 1.7e-64 250.4 233 57.5
Os01g0934400 Oryza sativa ssp. japonica HOM05D007200 ORTHO05D009030 1.2e-54 217.6 168 64.9
Pp3c2_22000 Physcomitrium patens HOM05D007200 ORTHO05D009030 4.9e-48 195.7 244 45.1
SMO140G0101 Selaginella moellendorffii HOM05D007200 ORTHO05D009030 1.1e-47 194.5 239 45.2
Hund07085 Selenicereus undatus HOM05D007200 ORTHO05D009030 7.0e-47 191.8 144 68.1
AagrBONN_evm.TU.Sc2ySwM_228.2760 Anthoceros agrestis HOM05D007200 ORTHO05D009030 2.0e-46 190.3 237 44.3
Mapoly0092s0016 Marchantia polymorpha HOM05D007200 ORTHO05D009030 3.9e-45 186.0 245 41.2
AUR62004827 Chenopodium quinoa HOM05D007200 ORTHO05D009030 1.6e-43 180.6 138 65.2
Sc16g0008540 Simmondsia chinensis HOM05D007200 ORTHO05D009030 4.4e-41 172.6 142 63.4
SGA_v2.0_scaffold95G28806 Striga asiatica HOM05D007200 ORTHO05D009030 1.5e-36 157.5 143 60.8
Oeu012109.1 Olea europaea HOM05D007200 ORTHO05D009030 2.8e-35 153.3 102 71.6
CBR_g32304 Chara braunii HOM05D007200 ORTHO05D009030 8.9e-34 148.3 266 35.7
Cre09.g389578 Chlamydomonas reinhardtii HOM05D007200 ORTHO05D009030 1.1e-31 141.4 257 37.7
MCO07G015 Micromonas commoda HOM05D007200 ORTHO05D009030 1.1e-31 141.4 240 37.1
PRCOL_00003141 Prasinoderma coloniale HOM05D007200 ORTHO05D009030 4.1e-31 139.4 234 41.9
Actinidia19786 Actinidia chinensis HOM05D007200 ORTHO05D009030 7.1e-31 138.7 107 62.6
C05p61820 Brassica napus HOM05D000205 ORTHO05D000438 1.9e-20 104.0 135 48.9
Os01g0934350 Oryza sativa ssp. japonica HOM05D007200 ORTHO05D009030 2.1e-19 100.5 72 65.3
MD04G1202900 Malus domestica HOM05D007200 ORTHO05D009030 1.5e-17 94.4 110 54.5
CAN.G1228.6 Capsicum annuum HOM05D002933 ORTHO05D007742 4.8e-11 72.8 115 34.8
AUR62039657 Chenopodium quinoa HOM05D002933 ORTHO05D007742 4.0e-10 69.7 113 30.1
BcaC02g09745 Brassica carinata HOM05D002933 ORTHO05D007742 5.3e-10 69.3 118 33.1
BolC4t25275H Brassica oleracea HOM05D002933 ORTHO05D007742 5.3e-10 69.3 118 33.1
EL10Ac5g11164 Beta vulgaris HOM05D002933 ORTHO05D007742 6.9e-10 68.9 113 31.0
AUR62032114 Chenopodium quinoa HOM05D002933 ORTHO05D007742 6.9e-10 68.9 113 30.1
A04p04610 Brassica napus HOM05D002933 ORTHO05D007742 9.0e-10 68.6 118 33.1
BraA04t16171Z Brassica rapa HOM05D002933 ORTHO05D007742 9.0e-10 68.6 118 33.1
BcaB02g08429 Brassica carinata HOM05D002933 ORTHO05D007742 1.5e-09 67.8 118 32.2
Carub.0005s2198 Capsella rubella HOM05D002933 ORTHO05D007742 1.5e-09 67.8 118 31.4
Hund02566 Selenicereus undatus HOM05D002933 ORTHO05D007742 2.0e-09 67.4 115 31.3
Solyc03g114930.3 Solanum lycopersicum HOM05D002933 ORTHO05D007742 3.4e-09 66.6 115 33.0
Sopen03g034010 Solanum pennellii HOM05D002933 ORTHO05D007742 3.4e-09 66.6 115 33.0
PGSC0003DMG400024531 Solanum tuberosum HOM05D002933 ORTHO05D007742 3.4e-09 66.6 115 32.2
Thhalv10010685m.g Eutrema salsugineum HOM05D002933 ORTHO05D007742 5.8e-09 65.9 118 31.4
Migut.B00505 Erythranthe guttata HOM05D002933 ORTHO05D007742 4.9e-08 62.8 115 29.6
Ah.11g047550 Amaranthus hybridus HOM05D006809 ORTHO05D008609 6.4e-08 62.4 232 23.3
Ciclev10032564m.g Citrus clementina HOM05D002933 ORTHO05D007742 2.4e-07 60.5 116 29.3


User provided reference genes

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