Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.P6ZKNU Arachis hypogaea HOM05D007546 ORTHO05D009542 1.3e-143 513.1 263 100.0
arahy.Tifrunner.gnm1.ann1.99CH68 Arachis hypogaea HOM05D007546 ORTHO05D009542 9.3e-142 506.9 263 98.5
arahy.Tifrunner.gnm1.ann1.N7I060 Arachis hypogaea HOM05D007546 ORTHO05D009542 1.0e-140 503.4 263 97.7
VMungo1383G0744 Vigna mungo HOM05D007546 ORTHO05D009542 2.2e-95 352.8 255 69.4
Lj1g0009003 Lotus japonicus HOM05D007546 ORTHO05D009542 1.3e-90 337.0 267 64.0
Medtr7g094790 Medicago truncatula HOM05D007546 ORTHO05D009542 2.5e-86 322.8 258 63.2
Psat3g064520 Pisum sativum HOM05D007546 ORTHO05D009542 3.6e-85 318.9 254 62.6
Lalb_Chr01g0013761 Lupinus albus HOM05D007546 ORTHO05D009542 6.7e-84 314.7 245 62.9
Ca_08577_v3 Cicer arietinum L. HOM05D007546 ORTHO05D009542 1.7e-79 300.1 235 63.4
Duzib138G1282 Durio zibethinus HOM05D007546 ORTHO05D009542 6.3e-74 281.6 268 50.7
TWI14G0110 Tripterygium wilfordii HOM05D007546 ORTHO05D009542 9.1e-73 277.7 282 51.8
Gohir.D08G076500 Gossypium hirsutum HOM05D007546 ORTHO05D009542 5.9e-72 275.0 276 50.7
Sabra05G0158800 Salix brachista HOM05D007546 ORTHO05D009542 5.9e-72 275.0 279 52.3
QL12p022024 Quercus lobata HOM05D007546 ORTHO05D009542 1.7e-71 273.5 261 52.5
Actinidia24887 Actinidia chinensis HOM05D007546 ORTHO05D009542 5.0e-71 271.9 275 49.5
Dinv34747 Davidia involucrata HOM05D007546 ORTHO05D009542 5.0e-71 271.9 275 51.3
CSS0011141 Camellia sinensis var. sinensis HOM05D007546 ORTHO05D009542 8.6e-71 271.2 275 50.9
TPR.G6147 Trifolium pratense HOM05D007546 ORTHO05D009542 3.2e-70 269.2 210 64.8
Gohir.A08G068100 Gossypium hirsutum HOM05D007546 ORTHO05D009542 7.2e-70 268.1 268 51.1
CsaV3_7G028190 Cucumis sativus L. HOM05D007546 ORTHO05D009542 9.5e-70 267.7 281 50.5
Sed0013948 Sechium edule HOM05D007546 ORTHO05D009542 1.6e-69 266.9 280 51.4
GSVIVG01011126001 Vitis vinifera HOM05D007546 ORTHO05D009542 2.8e-69 266.2 273 50.5
MELO3C015843.2 Cucumis melo HOM05D007546 ORTHO05D009542 6.1e-69 265.0 278 50.7
DCAR_018417 Daucus carota HOM05D007546 ORTHO05D009542 1.8e-68 263.5 275 47.6
Atru.chr5.1426 Acer truncatum HOM05D007546 ORTHO05D009542 3.0e-68 262.7 279 50.5
Lsat_1_v5_gn_9_3860 Lactuca sativa HOM05D007546 ORTHO05D009542 3.0e-68 262.7 268 50.0
Potri.005G208700 Populus trichocarpa HOM05D007546 ORTHO05D009542 2.0e-67 260.0 267 50.2
MSTRG.18229 Avicennia marina HOM05D007546 ORTHO05D009542 2.6e-67 259.6 265 51.7
Cc01_g19550 Coffea canephora HOM05D007546 ORTHO05D009542 2.8e-66 256.1 268 50.7
Haze_04718 Corylus avellana HOM05D007546 ORTHO05D009542 1.4e-65 253.8 240 55.4
Thecc.01G280300 Theobroma cacao HOM05D007546 ORTHO05D009542 1.8e-65 253.4 229 54.6
Hund05346 Selenicereus undatus HOM05D007546 ORTHO05D009542 2.4e-65 253.1 264 51.1
Eucgr.H01486 Eucalyptus grandis HOM05D007546 ORTHO05D009542 9.2e-65 251.1 264 49.2
PSO170G1280 Papaver somniferum HOM05D007546 ORTHO05D009542 9.2e-65 251.1 267 49.8
SalBow4G0341 Salvia bowleyana HOM05D007546 ORTHO05D009542 1.2e-64 250.8 277 49.8
Gorai.004G081100 Gossypium raimondii HOM05D007546 ORTHO05D009542 2.7e-64 249.6 259 49.4
Hma1.2p1_0257F.1_g103530 Hydrangea macrophylla HOM05D007546 ORTHO05D009542 2.7e-64 249.6 260 50.4
HanXRQChr10g0282741 Helianthus annuus HOM05D007546 ORTHO05D009542 4.5e-64 248.8 269 48.3
Peaxi162Scf01622g00012 Petunia axillaris HOM05D007546 ORTHO05D009542 5.9e-64 248.4 257 49.0
ClCG09G006970 Citrullus lanatus HOM05D007546 ORTHO05D009542 2.9e-63 246.1 307 46.6
Ciclev10023872m.g Citrus clementina HOM05D007546 ORTHO05D009542 2.9e-63 246.1 264 50.0
SGA_v2.0_scaffold1G00465 Striga asiatica HOM05D007546 ORTHO05D009542 2.9e-63 246.1 277 50.2
CANSAT25G0166 Cannabis sativa HOM05D007546 ORTHO05D009542 1.1e-62 244.2 270 48.9
MD11G1286600 Malus domestica HOM05D007546 ORTHO05D009542 1.1e-62 244.2 258 50.8
Aqoxy2G03310 Aquilegia oxysepala HOM05D007546 ORTHO05D009542 1.9e-62 243.4 256 46.9
COL.COLO4_09104 Corchorus olitorius HOM05D007546 ORTHO05D009542 5.6e-62 241.9 223 53.4
Glyma.03G153000 Glycine max HOM05D007546 ORTHO05D009542 2.8e-61 239.6 178 67.4
THA.LOC104801231 Tarenaya hassleriana HOM05D007546 ORTHO05D009542 3.6e-61 239.2 261 49.0
Nn2g12733 Nelumbo nucifera HOM05D007546 ORTHO05D009542 4.7e-61 238.8 266 45.1
RcHm_v2.0_Chr6g0291141 Rosa chinensis HOM05D007546 ORTHO05D009542 4.7e-61 238.8 260 47.3
PGR119G0241 Punica granatum HOM05D007546 ORTHO05D009542 5.2e-60 235.3 269 45.4
AL1G12670 Arabidopsis lyrata HOM05D007546 ORTHO05D009542 1.2e-59 234.2 265 47.9
FvH4_2g23671 Fragaria vesca HOM05D007546 ORTHO05D009542 1.2e-59 234.2 257 47.1
ECA247G1813 Erigeron canadensis HOM05D007546 ORTHO05D009542 1.5e-59 233.8 264 46.2
Solyc09g065110.4 Solanum lycopersicum HOM05D007546 ORTHO05D009542 1.3e-58 230.7 269 46.8
AUR62036823 Chenopodium quinoa HOM05D007546 ORTHO05D009542 2.2e-58 229.9 264 45.5
Phvul.001G150400 Phaseolus vulgaris HOM05D007546 ORTHO05D009542 2.9e-58 229.6 177 65.0
PGSC0003DMG402012883 Solanum tuberosum HOM05D007546 ORTHO05D009542 2.9e-58 229.6 269 45.7
Sopen09g026830 Solanum pennellii HOM05D007546 ORTHO05D009542 4.9e-58 228.8 269 45.4
Hma1.2p1_0257F.1_g103520 Hydrangea macrophylla HOM05D007546 ORTHO05D009542 2.4e-57 226.5 225 52.9
Sp1g02200 Schrenkiella parvula HOM05D007546 ORTHO05D009542 2.4e-57 226.5 267 46.1
Carub.0001s0232 Capsella rubella HOM05D007546 ORTHO05D009542 4.1e-57 225.7 269 45.4
Migut.D00289 Erythranthe guttata HOM05D007546 ORTHO05D009542 4.1e-57 225.7 277 45.5
Prupe.8G241900 Prunus persica HOM05D007546 ORTHO05D009542 9.2e-57 224.6 265 47.9
EL10Ac7g17228 Beta vulgaris HOM05D007546 ORTHO05D009542 2.0e-56 223.4 269 46.1
Manes.01G208300 Manihot esculenta HOM05D007546 ORTHO05D009542 3.5e-56 222.6 208 53.4
Lj2C1174G3 Lonicera japonica HOM05D007546 ORTHO05D009542 7.8e-56 221.5 238 46.2
Oeu012757.1 Olea europaea HOM05D007546 ORTHO05D009542 7.8e-56 221.5 221 53.8
Nitab4.5_0001028g0010 Nicotiana tabacum HOM05D007546 ORTHO05D009542 1.3e-55 220.7 232 50.0
C08p00480 Brassica napus HOM05D005387 ORTHO05D006711 1.7e-55 220.3 262 45.4
Thhalv10008478m.g Eutrema salsugineum HOM05D007546 ORTHO05D009542 6.6e-55 218.4 267 44.6
vmacro14926 Vaccinium macrocarpon HOM05D007546 ORTHO05D009542 1.1e-54 217.6 246 45.5
BraA08t35641Z Brassica rapa HOM05D005387 ORTHO05D006711 3.3e-54 216.1 255 44.7
AUR62038619 Chenopodium quinoa HOM05D007546 ORTHO05D009542 3.6e-53 212.6 281 41.6
FAN20G2110 Fragaria x ananassa HOM05D005331 ORTHO05D007596 1.2e-51 207.6 237 45.6
unitig_61.g26331 Utricularia gibba HOM05D007546 ORTHO05D009542 1.2e-51 207.6 261 46.0
Aa31LG1G9350 Aethionema arabicum HOM05D007546 ORTHO05D009542 1.5e-51 207.2 259 44.8
CARHR002520 Cardamine hirsuta HOM05D007546 ORTHO05D009542 2.6e-51 206.5 223 49.8
FAN24G2921 Fragaria x ananassa HOM05D005331 ORTHO05D007596 1.3e-50 204.1 234 45.7
BcaC07g36978 Brassica carinata HOM05D005387 ORTHO05D006711 1.7e-50 203.8 252 44.0
Cpa.g.sc52.28 Carica papaya HOM05D007546 ORTHO05D009542 3.7e-50 202.6 191 54.5
A08p37430 Brassica napus HOM05D005387 ORTHO05D006711 8.3e-50 201.4 280 41.1
CAN.G242.7 Capsicum annuum HOM05D007546 ORTHO05D009542 2.4e-49 199.9 220 49.1
FAN15G1459 Fragaria x ananassa HOM05D005331 ORTHO05D007596 7.0e-49 198.4 264 41.7
Sc05g0004940 Simmondsia chinensis HOM05D007546 ORTHO05D009542 9.2e-49 198.0 198 51.5
Ah.15g091950 Amaranthus hybridus HOM05D007546 ORTHO05D009542 3.9e-47 192.6 219 45.7
Os05g0251400 Oryza sativa ssp. japonica HOM05D007546 ORTHO05D009542 1.5e-46 190.7 262 39.7
Nitab4.5_0010448g0030 Nicotiana tabacum HOM05D007546 ORTHO05D009542 5.6e-46 188.7 237 44.7
MBI19_g16657_MAGBIO Magnolia biondii HOM05D007546 ORTHO05D009542 9.5e-46 188.0 261 39.1
HPP92_010632 Vanilla planifolia HOM05D007546 ORTHO05D009542 4.7e-45 185.7 277 38.6
AT1G03180 Arabidopsis thaliana HOM05D007546 ORTHO05D009542 1.1e-41 174.5 180 48.9
Zm00001eb132020 Zea mays HOM05D007546 ORTHO05D009542 5.4e-41 172.2 253 39.1
ATR0626G078 Amborella trichopoda HOM05D007546 ORTHO05D009542 1.3e-39 167.5 234 39.7
AUR62043164 Chenopodium quinoa HOM05D007546 ORTHO05D009542 7.3e-38 161.8 180 46.7
Glyma.19G155400 Glycine max HOM05D007546 ORTHO05D009542 1.6e-32 144.1 103 69.9
Potri.002G053801 Populus trichocarpa HOM05D007546 ORTHO05D009542 7.8e-32 141.7 141 53.9
CSS0034697 Camellia sinensis var. sinensis HOM05D007546 ORTHO05D009542 9.6e-14 81.6 85 48.2
Mapoly0002s0121 Marchantia polymorpha HOM05D007546 ORTHO05D009542 1.4e-09 67.8 250 27.2
SalBow4G3151 Salvia bowleyana HOM05D007546 ORTHO05D009542 2.1e-08 63.9 57 54.4
SalBow8G3203 Salvia bowleyana HOM05D007546 ORTHO05D009542 2.7e-08 63.5 63 54.0
SalBow1G5735 Salvia bowleyana HOM05D007546 ORTHO05D009542 9.6e-06 55.1 63 52.4


User provided reference genes

Program Settings