Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.P4UX3D Arachis hypogaea HOM05D004186 ORTHO05D015971 1.1e-100 369.8 171 100.0
arahy.Tifrunner.gnm1.ann1.NDN785 Arachis hypogaea HOM05D004186 ORTHO05D015971 1.9e-95 352.4 163 98.8
arahy.Tifrunner.gnm1.ann1.YY53PU Arachis hypogaea HOM05D004186 ORTHO05D006965 4.2e-87 324.7 161 91.3
arahy.Tifrunner.gnm1.ann1.CAM23Q Arachis hypogaea HOM05D004186 ORTHO05D006965 4.8e-83 311.2 172 84.3
Lalb_Chr11g0072331 Lupinus albus HOM05D004186 ORTHO05D006965 7.5e-76 287.3 173 78.0
Ca_21198_v3 Cicer arietinum L. HOM05D004186 ORTHO05D006965 1.6e-73 279.6 173 76.3
Lj4g0000380 Lotus japonicus HOM05D004186 ORTHO05D006965 2.0e-73 279.3 173 75.7
TPR.G5301 Trifolium pratense HOM05D004186 ORTHO05D006965 2.5e-71 272.3 173 74.6
Glyma.17G066200 Glycine max HOM05D004186 ORTHO05D006965 2.8e-70 268.9 173 74.6
Phvul.003G148700 Phaseolus vulgaris HOM05D004186 ORTHO05D006965 2.8e-70 268.9 173 73.4
VMungo1215G1034 Vigna mungo HOM05D004186 ORTHO05D006965 2.8e-70 268.9 173 72.8
Cpa.g.sc75.2 Carica papaya HOM05D004186 ORTHO05D006965 4.0e-69 265.0 176 69.3
COL.COLO4_09973 Corchorus olitorius HOM05D004186 ORTHO05D006965 4.0e-69 265.0 164 75.6
Duzib114G0309 Durio zibethinus HOM05D004186 ORTHO05D006965 4.0e-69 265.0 164 76.2
Thecc.10G167400 Theobroma cacao HOM05D004186 ORTHO05D006965 6.8e-69 264.2 164 75.6
Cpa.g.sc95.75 Carica papaya HOM05D004186 ORTHO05D006965 8.9e-69 263.8 176 70.5
Duzib034G0005 Durio zibethinus HOM05D004186 ORTHO05D006965 1.5e-68 263.1 164 75.6
TWI32G0580 Tripterygium wilfordii HOM05D004186 ORTHO05D006965 1.5e-68 263.1 171 73.7
Prupe.1G091900 Prunus persica HOM05D004186 ORTHO05D006965 2.6e-68 262.3 172 74.4
CANSAT11G0657 Cannabis sativa HOM05D004186 ORTHO05D006965 3.4e-68 261.9 171 73.7
Manes.06G027600 Manihot esculenta HOM05D004186 ORTHO05D006965 9.8e-68 260.4 172 72.1
GSVIVG01029114001 Vitis vinifera HOM05D004186 ORTHO05D006965 9.8e-68 260.4 167 76.0
TAR636G1430 Trochodendron aralioides HOM05D004186 ORTHO05D006965 2.2e-67 259.2 179 70.4
QL02p096850 Quercus lobata HOM05D004186 ORTHO05D006965 2.9e-67 258.8 171 71.9
MD16G1265900 Malus domestica HOM05D004186 ORTHO05D006965 3.7e-67 258.5 172 72.1
Psat0ss9363g0320 Pisum sativum HOM05D004186 ORTHO05D006965 3.7e-67 258.5 153 77.1
PSO063G2639 Papaver somniferum HOM05D004186 ORTHO05D006965 8.3e-67 257.3 172 72.7
THA.LOC104813530 Tarenaya hassleriana HOM05D004186 ORTHO05D006965 8.3e-67 257.3 173 69.9
BcaC04g19942 Brassica carinata HOM05D004186 ORTHO05D006965 1.1e-66 256.9 171 69.6
C09p49530 Brassica napus HOM05D004186 ORTHO05D006965 1.1e-66 256.9 171 69.6
A10p15060 Brassica napus HOM05D004186 ORTHO05D006965 2.4e-66 255.8 171 67.8
BraA10t43588Z Brassica rapa HOM05D004186 ORTHO05D006965 2.4e-66 255.8 171 67.8
Dinv41278 Davidia involucrata HOM05D004186 ORTHO05D006965 2.4e-66 255.8 177 70.1
MD13G1265000 Malus domestica HOM05D004186 ORTHO05D006965 2.4e-66 255.8 175 70.9
Oeu054233.2 Olea europaea HOM05D004186 ORTHO05D006965 2.4e-66 255.8 178 70.2
Potri.018G096049 Populus trichocarpa HOM05D004186 ORTHO05D006965 3.2e-66 255.4 172 70.9
BcaB08g36123 Brassica carinata HOM05D004186 ORTHO05D006965 4.1e-66 255.0 171 67.8
CSS0041373 Camellia sinensis var. sinensis HOM05D004186 ORTHO05D006965 4.1e-66 255.0 170 70.6
Gohir.D05G282700 Gossypium hirsutum HOM05D004186 ORTHO05D006965 4.1e-66 255.0 164 72.6
TAR625G0733 Trochodendron aralioides HOM05D004186 ORTHO05D006965 4.1e-66 255.0 179 69.3
Aqoxy7G03142 Aquilegia oxysepala HOM05D004186 ORTHO05D006965 7.0e-66 254.2 166 71.1
Medtr4g128840 Medicago truncatula HOM05D004186 ORTHO05D006965 7.0e-66 254.2 174 70.1
Duzib128G0608 Durio zibethinus HOM05D004186 ORTHO05D006965 1.2e-65 253.4 164 72.6
FAN07G2198 Fragaria x ananassa HOM05D004186 ORTHO05D006965 1.6e-65 253.1 174 69.5
RhsimUnG0079700 Rhododendron simsii HOM05D004186 ORTHO05D006965 1.6e-65 253.1 171 70.2
CsaV3_2G008080 Cucumis sativus L. HOM05D004186 ORTHO05D006965 2.0e-65 252.7 171 69.0
FvH4_4g32520 Fragaria vesca HOM05D004186 ORTHO05D006965 2.0e-65 252.7 171 70.2
FAN12G1387 Fragaria x ananassa HOM05D004186 ORTHO05D006965 2.0e-65 252.7 171 70.2
Gorai.009G296100 Gossypium raimondii HOM05D004186 ORTHO05D006965 2.7e-65 252.3 164 72.0
Manes.02G134800 Manihot esculenta HOM05D004186 ORTHO05D006965 2.7e-65 252.3 177 67.8
RcHm_v2.0_Chr4g0403601 Rosa chinensis HOM05D004186 ORTHO05D006965 2.7e-65 252.3 171 70.2
Atru.chr7.741 Acer truncatum HOM05D004186 ORTHO05D006965 3.5e-65 251.9 169 71.6
Sp6g19340 Schrenkiella parvula HOM05D004186 ORTHO05D006965 3.5e-65 251.9 171 68.4
Aa31LG3G13490 Aethionema arabicum HOM05D004186 ORTHO05D006965 4.6e-65 251.5 171 67.3
CARHR271410 Cardamine hirsuta HOM05D004186 ORTHO05D006965 4.6e-65 251.5 172 67.4
ClCG11G012460 Citrullus lanatus HOM05D004186 ORTHO05D006965 6.0e-65 251.1 171 68.4
Sopen07g002760 Solanum pennellii HOM05D004186 ORTHO05D006965 6.0e-65 251.1 166 71.7
Cc06_g13640 Coffea canephora HOM05D004186 ORTHO05D006965 7.8e-65 250.8 173 69.4
Solyc07g006650.4 Solanum lycopersicum HOM05D004186 ORTHO05D006965 7.8e-65 250.8 166 71.1
HPP92_013702 Vanilla planifolia HOM05D004186 ORTHO05D006965 7.8e-65 250.8 170 71.8
Gohir.A05G280700 Gossypium hirsutum HOM05D004186 ORTHO05D006965 1.0e-64 250.4 164 70.7
CiPaw.08G037900 Carya illinoinensis HOM05D004186 ORTHO05D006965 1.3e-64 250.0 172 70.3
Dinv42759 Davidia involucrata HOM05D004186 ORTHO05D006965 1.3e-64 250.0 174 69.5
Dinv43343 Davidia involucrata HOM05D004186 ORTHO05D006965 1.3e-64 250.0 174 69.5
Actinidia04122 Actinidia chinensis HOM05D004186 ORTHO05D006965 1.7e-64 249.6 172 70.9
BolC9t57806H Brassica oleracea HOM05D004186 ORTHO05D006965 1.7e-64 249.6 179 66.5
Hma1.2p1_1261F.1_g271200 Hydrangea macrophylla HOM05D004186 ORTHO05D006965 1.7e-64 249.6 176 69.9
arahy.Tifrunner.gnm1.ann1.QC9P0E Arachis hypogaea HOM05D004186 ORTHO05D006965 2.3e-64 249.2 180 67.2
Thhalv10013406m.g Eutrema salsugineum HOM05D004186 ORTHO05D006965 2.3e-64 249.2 172 68.0
SGA_v2.0_scaffold69G23283 Striga asiatica HOM05D004186 ORTHO05D006965 2.3e-64 249.2 173 70.5
AT5G57655 Arabidopsis thaliana HOM05D004186 ORTHO05D006965 3.0e-64 248.8 171 67.8
arahy.Tifrunner.gnm1.ann1.WFV6V5 Arachis hypogaea HOM05D004186 ORTHO05D006965 3.9e-64 248.4 181 68.0
PSO782G1691 Papaver somniferum HOM05D004186 ORTHO05D006965 5.0e-64 248.1 172 71.5
Carub.0008s1816 Capsella rubella HOM05D004186 ORTHO05D006965 6.6e-64 247.7 171 67.8
MELO3C004075.2 Cucumis melo HOM05D004186 ORTHO05D006965 6.6e-64 247.7 164 69.5
CiPaw.07G189100 Carya illinoinensis HOM05D004186 ORTHO05D006965 8.6e-64 247.3 166 71.7
SalBow6G3740 Salvia bowleyana HOM05D004186 ORTHO05D006965 8.6e-64 247.3 173 68.2
Ciclev10008154m.g Citrus clementina HOM05D004186 ORTHO05D006965 1.1e-63 246.9 172 70.3
AL8G33680 Arabidopsis lyrata HOM05D004186 ORTHO05D006965 1.5e-63 246.5 164 69.5
SalBow6G2747 Salvia bowleyana HOM05D004186 ORTHO05D015971 1.5e-63 246.5 157 72.0
Sc08g0005470 Simmondsia chinensis HOM05D004186 ORTHO05D006965 1.9e-63 246.1 172 68.0
Sed0027081 Sechium edule HOM05D004186 ORTHO05D006965 5.6e-63 244.6 171 67.8
FAN22G1241 Fragaria x ananassa HOM05D004186 ORTHO05D006965 9.5e-63 243.8 185 64.9
Migut.J01448 Erythranthe guttata HOM05D004186 ORTHO05D006965 2.1e-62 242.7 172 69.2
ATR0580G261 Amborella trichopoda HOM05D004186 ORTHO05D006965 2.8e-62 242.3 174 67.2
AUR62039990 Chenopodium quinoa HOM05D004186 ORTHO05D006965 4.7e-62 241.5 164 70.7
PGSC0003DMG400027477 Solanum tuberosum HOM05D004186 ORTHO05D006965 4.7e-62 241.5 166 70.5
Os07g0669100 Oryza sativa ssp. japonica HOM05D004186 ORTHO05D006965 1.1e-61 240.4 173 65.9
Migut.K00260 Erythranthe guttata HOM05D004186 ORTHO05D006965 1.4e-61 240.0 173 68.2
Nitab4.5_0000244g0180 Nicotiana tabacum HOM05D004186 ORTHO05D006965 1.8e-61 239.6 135 81.5
Nitab4.5_0001212g0070 Nicotiana tabacum HOM05D004186 ORTHO05D006965 1.8e-61 239.6 135 81.5
Zm00001eb330180 Zea mays HOM05D004186 ORTHO05D006965 1.8e-61 239.6 154 70.1
AUR62040296 Chenopodium quinoa HOM05D004186 ORTHO05D006965 2.3e-61 239.2 164 69.5
Eucgr.G01193 Eucalyptus grandis HOM05D004186 ORTHO05D006965 3.1e-61 238.8 164 68.3
Ah.14g083970 Amaranthus hybridus HOM05D004186 ORTHO05D006965 4.0e-61 238.4 145 76.6
HanXRQChr05g0136751 Helianthus annuus HOM05D004186 ORTHO05D006965 6.8e-61 237.7 171 67.8
Lsat_1_v5_gn_8_66460 Lactuca sativa HOM05D004186 ORTHO05D006965 6.8e-61 237.7 167 67.7
Rhsim01G0008400 Rhododendron simsii HOM05D004186 ORTHO05D006965 1.2e-60 236.9 177 65.5
A02p08350 Brassica napus HOM05D004186 ORTHO05D015971 1.5e-60 236.5 183 61.7
Hund09010 Selenicereus undatus HOM05D004186 ORTHO05D006965 1.5e-60 236.5 148 75.0
Zm00001eb111020 Zea mays HOM05D004186 ORTHO05D006965 1.5e-60 236.5 149 71.8
DCAR_017956 Daucus carota HOM05D004186 ORTHO05D006965 3.4e-60 235.3 146 74.0
EL10Ac8g18262 Beta vulgaris HOM05D004186 ORTHO05D006965 4.4e-60 235.0 165 69.7
Lj9A689G39 Lonicera japonica HOM05D004186 ORTHO05D006965 4.4e-60 235.0 145 73.8
CDE04G0897 Ceratophyllum demersum HOM05D004186 ORTHO05D006965 5.8e-60 234.6 168 69.0
BraA02t05904Z Brassica rapa HOM05D004186 ORTHO05D015971 9.8e-60 233.8 183 61.2
CAN.G584.24 Capsicum annuum HOM05D004186 ORTHO05D006965 9.8e-60 233.8 166 68.7
ECA236G4107 Erigeron canadensis HOM05D004186 ORTHO05D006965 2.9e-59 232.3 174 64.9
Peaxi162Scf00942g00127 Petunia axillaris HOM05D004186 ORTHO05D006965 3.7e-59 231.9 166 68.1
Gohir.D06G185466 Gossypium hirsutum HOM05D004186 ORTHO05D006965 4.9e-59 231.5 163 65.0
SEGI_37950 Sequoiadendron giganteum HOM05D004186 ORTHO05D006965 1.1e-58 230.3 151 70.9
MSTRG.19694 Avicennia marina HOM05D004186 ORTHO05D006965 2.4e-58 229.2 173 64.2
Gorai.010G217000 Gossypium raimondii HOM05D004186 ORTHO05D006965 1.7e-56 223.0 163 63.8
Nn2g12639 Nelumbo nucifera HOM05D004186 ORTHO05D006965 5.6e-55 218.0 150 70.0
vmacro13097 Vaccinium macrocarpon HOM05D004186 ORTHO05D006965 9.5e-55 217.2 178 61.2
SMO259G0020 Selaginella moellendorffii HOM05D004186 ORTHO05D006965 2.3e-53 212.6 165 61.2
AagrBONN_evm.TU.Sc2ySwM_228.4505 Anthoceros agrestis HOM05D004186 ORTHO05D006965 3.1e-53 212.2 145 67.6
Mapoly0030s0071 Marchantia polymorpha HOM05D004186 ORTHO05D006965 3.1e-53 212.2 166 60.2
Pp3c6_6020 Physcomitrium patens HOM05D004186 ORTHO05D006965 6.8e-53 211.1 145 64.1
Gohir.A06G175800 Gossypium hirsutum HOM05D004186 ORTHO05D006965 8.9e-53 210.7 163 61.3
Oeu052240.1 Olea europaea HOM05D004186 ORTHO05D006965 8.3e-51 204.1 162 61.1
Hund26412 Selenicereus undatus HOM05D004186 ORTHO05D006965 8.1e-46 187.6 145 63.4
MBI14_g39543_MAGBIO Magnolia biondii HOM05D004186 ORTHO05D006965 3.4e-44 182.2 168 54.8
Rhsim01G0008600 Rhododendron simsii HOM05D004186 ORTHO05D015971 1.3e-40 170.2 99 75.8
RhsimUnG0079500 Rhododendron simsii HOM05D004186 ORTHO05D015971 1.3e-40 170.2 99 75.8
Haze_22131 Corylus avellana HOM05D004186 ORTHO05D006965 5.1e-40 168.3 140 60.0
unitig_26.g9078 Utricularia gibba HOM05D004186 ORTHO05D006965 2.9e-35 152.5 137 54.0
Zm00001eb059010 Zea mays HOM05D004186 ORTHO05D006965 2.5e-31 139.4 92 67.4
Zm00001eb194710 Zea mays HOM05D004186 ORTHO05D006965 2.5e-31 139.4 92 67.4
Zm00001eb347580 Zea mays HOM05D004186 ORTHO05D006965 2.5e-31 139.4 92 67.4
PRCOL_00002845 Prasinoderma coloniale HOM05D004186 ORTHO05D006965 2.8e-30 136.0 167 40.1
TAR383G0623 Trochodendron aralioides HOM05D004186 ORTHO05D415797 3.1e-29 132.5 85 71.8
MCO08G279 Micromonas commoda HOM05D004186 ORTHO05D006965 3.8e-27 125.6 100 57.0
HanXRQChr09g0269751 Helianthus annuus HOM05D004186 ORTHO05D015971 4.9e-27 125.2 97 62.9
RcHm_v2.0_Chr5g0046871 Rosa chinensis HOM05D004186 ORTHO05D015971 3.5e-25 119.0 77 67.5
C02p14070 Brassica napus HOM05D004186 ORTHO05D032859 9.6e-23 110.9 184 39.1
RcHm_v2.0_Chr5g0036521 Rosa chinensis HOM05D004186 ORTHO05D015971 1.4e-21 107.1 77 63.6
BolC2t07527H Brassica oleracea HOM05D004186 ORTHO05D032859 4.0e-21 105.5 189 38.1
BcaC03g14138 Brassica carinata HOM05D004186 ORTHO05D032859 7.6e-20 101.3 80 58.8
C02p54480 Brassica napus HOM05D003206 ORTHO05D016781 8.2e-14 81.3 75 54.7
SGA_v2.0_scaffold66G22476 Striga asiatica HOM05D004186 ORTHO05D405288 1.3e-08 63.9 34 91.2


User provided reference genes

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