Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.P3JCM3 Arachis hypogaea HOM05D002653 ORTHO05D002623 5.1e-28 127.1 67 100.0
arahy.Tifrunner.gnm1.ann1.21MRAZ Arachis hypogaea HOM05D002653 ORTHO05D002623 5.6e-19 97.1 96 62.5
arahy.Tifrunner.gnm1.ann1.GW217K Arachis hypogaea HOM05D002653 ORTHO05D002623 5.6e-19 97.1 96 62.5
FvH4_6g36300 Fragaria vesca HOM05D002653 ORTHO05D002623 1.1e-17 92.8 96 57.3
FAN02G0462 Fragaria x ananassa HOM05D002653 ORTHO05D002623 1.1e-17 92.8 96 57.3
FAN14G0870 Fragaria x ananassa HOM05D002653 ORTHO05D002623 1.1e-17 92.8 96 57.3
FAN14G5588 Fragaria x ananassa HOM05D002653 ORTHO05D002623 1.1e-17 92.8 96 57.3
QL04p064964 Quercus lobata HOM05D002653 ORTHO05D002623 1.1e-17 92.8 96 57.3
RcHm_v2.0_Chr2g0148311 Rosa chinensis HOM05D002653 ORTHO05D002623 1.1e-17 92.8 96 57.3
Cfa016258 Carpinus fangiana HOM05D002653 ORTHO05D002623 1.8e-17 92.0 96 56.2
TAR624G1146 Trochodendron aralioides HOM05D002653 ORTHO05D002623 3.1e-17 91.3 96 56.2
CiPaw.06G000600 Carya illinoinensis HOM05D002653 ORTHO05D002623 5.3e-17 90.5 96 55.2
Glyma.13G174600 Glycine max HOM05D002653 ORTHO05D002623 5.3e-17 90.5 96 57.3
VMungo0251G2737 Vigna mungo HOM05D002653 ORTHO05D002623 5.3e-17 90.5 96 57.3
GSVIVG01019366001 Vitis vinifera HOM05D002653 ORTHO05D002623 5.3e-17 90.5 96 56.2
Lalb_Chr01g0009381 Lupinus albus HOM05D002653 ORTHO05D002623 6.9e-17 90.1 96 56.2
Lj4C825G3 Lonicera japonica HOM05D002653 ORTHO05D002623 1.2e-16 89.4 96 55.2
Lj4g0020533 Lotus japonicus HOM05D002653 ORTHO05D002623 1.5e-16 89.0 96 55.2
LjContig00141g0016117 Lotus japonicus HOM05D002653 ORTHO05D002623 1.5e-16 89.0 96 55.2
Duzib114G0204 Durio zibethinus HOM05D002653 ORTHO05D002623 2.0e-16 88.6 96 55.2
Gohir.A05G394600 Gossypium hirsutum HOM05D002653 ORTHO05D002623 2.0e-16 88.6 96 55.2
Gohir.D04G020351 Gossypium hirsutum HOM05D002653 ORTHO05D002623 2.0e-16 88.6 96 55.2
Gorai.012G024100 Gossypium raimondii HOM05D002653 ORTHO05D002623 2.0e-16 88.6 96 55.2
Manes.09G076300 Manihot esculenta HOM05D002653 ORTHO05D002623 2.0e-16 88.6 95 54.7
Manes.11G165700 Manihot esculenta HOM05D002653 ORTHO05D002623 2.0e-16 88.6 96 55.2
Medtr2g007250 Medicago truncatula HOM05D002653 ORTHO05D002623 2.0e-16 88.6 96 54.2
Thecc.01G150000 Theobroma cacao HOM05D002653 ORTHO05D002623 2.0e-16 88.6 96 55.2
TPR.G8155 Trifolium pratense HOM05D002653 ORTHO05D002623 2.0e-16 88.6 96 54.2
CANSAT01G2419 Cannabis sativa HOM05D002653 ORTHO05D002623 2.6e-16 88.2 96 55.2
Ca_27225_v3 Cicer arietinum L. HOM05D002653 ORTHO05D002623 2.6e-16 88.2 95 54.7
Phvul.002G328600 Phaseolus vulgaris HOM05D002653 ORTHO05D002623 2.6e-16 88.2 96 56.2
Phvul.002G328704 Phaseolus vulgaris HOM05D002653 ORTHO05D002623 2.6e-16 88.2 96 56.2
vmacro03486 Vaccinium macrocarpon HOM05D002653 ORTHO05D002623 2.6e-16 88.2 96 55.2
arahy.Tifrunner.gnm1.ann1.LJ799F Arachis hypogaea HOM05D002653 ORTHO05D002623 3.4e-16 87.8 98 55.1
CSS0041142 Camellia sinensis var. sinensis HOM05D002653 ORTHO05D002623 3.4e-16 87.8 96 54.2
CSS0047039 Camellia sinensis var. sinensis HOM05D002653 ORTHO05D002623 3.4e-16 87.8 96 54.2
Cc11_g00280 Coffea canephora HOM05D002653 ORTHO05D002623 3.4e-16 87.8 96 55.2
Potri.001G455600 Populus trichocarpa HOM05D002653 ORTHO05D002623 3.4e-16 87.8 96 54.2
SalBow1G2769 Salvia bowleyana HOM05D002653 ORTHO05D002623 3.4e-16 87.8 96 54.2
SalBow1G3632 Salvia bowleyana HOM05D002653 ORTHO05D002623 3.4e-16 87.8 96 54.2
SGA_v2.0_scaffold131G34416 Striga asiatica HOM05D002653 ORTHO05D002623 3.4e-16 87.8 96 54.2
Dinv38369 Davidia involucrata HOM05D002653 ORTHO05D002623 4.5e-16 87.4 96 53.1
Psat0s3513g0080 Pisum sativum HOM05D002653 ORTHO05D002623 4.5e-16 87.4 96 54.2
Sc15g0007450 Simmondsia chinensis HOM05D002653 ORTHO05D002623 4.5e-16 87.4 96 54.2
Migut.L00525 Erythranthe guttata HOM05D002653 ORTHO05D002623 5.8e-16 87.0 96 54.2
Migut.L00786 Erythranthe guttata HOM05D002653 ORTHO05D002623 5.8e-16 87.0 96 54.2
unitig_8.g3108 Utricularia gibba HOM05D002653 ORTHO05D002623 5.8e-16 87.0 96 53.1
AUR62007656 Chenopodium quinoa HOM05D002653 ORTHO05D002623 7.6e-16 86.7 96 53.1
AUR62013467 Chenopodium quinoa HOM05D002653 ORTHO05D002623 7.6e-16 86.7 96 53.1
ClCG03G010410 Citrullus lanatus HOM05D002653 ORTHO05D002623 7.6e-16 86.7 96 53.1
MELO3C010025.2 Cucumis melo HOM05D002653 ORTHO05D002623 7.6e-16 86.7 96 53.1
CsaV3_1G044330 Cucumis sativus L. HOM05D002653 ORTHO05D002623 7.6e-16 86.7 96 53.1
EL10Ac1g01415 Beta vulgaris HOM05D002653 ORTHO05D002623 9.9e-16 86.3 96 53.1
Cpa.g.sc119.2 Carica papaya HOM05D002653 ORTHO05D002623 9.9e-16 86.3 96 53.1
ECA233G1976 Erigeron canadensis HOM05D002653 ORTHO05D002623 9.9e-16 86.3 96 54.2
Rhsim13G0127300 Rhododendron simsii HOM05D002653 ORTHO05D002623 9.9e-16 86.3 96 54.2
Ca_01486_v3 Cicer arietinum L. HOM05D002653 ORTHO05D002623 1.3e-15 85.9 96 53.1
COL.COLO4_33575 Corchorus olitorius HOM05D002653 ORTHO05D002623 1.3e-15 85.9 96 54.2
Sed0003631 Sechium edule HOM05D002653 ORTHO05D002623 1.3e-15 85.9 96 52.1
TWI34G1636 Tripterygium wilfordii HOM05D002653 ORTHO05D002623 1.3e-15 85.9 96 53.1
MD17G1156800 Malus domestica HOM05D002653 ORTHO05D002623 1.7e-15 85.5 92 55.4
MSTRG.8096 Avicennia marina HOM05D002653 ORTHO05D002623 2.2e-15 85.1 96 53.1
DCAR_018920 Daucus carota HOM05D002653 ORTHO05D002623 2.2e-15 85.1 96 52.1
Lsat_1_v5_gn_6_56501 Lactuca sativa HOM05D002653 ORTHO05D002623 2.9e-15 84.7 96 53.1
Sabra16G0308200 Salix brachista HOM05D002653 ORTHO05D002623 2.9e-15 84.7 96 52.1
Lsat_1_v5_gn_8_5081 Lactuca sativa HOM05D002653 ORTHO05D002623 3.8e-15 84.3 98 52.0
Prupe.3G028500 Prunus persica HOM05D002653 ORTHO05D002623 3.8e-15 84.3 92 54.3
PGR044G0026 Punica granatum HOM05D002653 ORTHO05D002623 3.8e-15 84.3 96 53.1
Nn7g37406 Nelumbo nucifera HOM05D002653 ORTHO05D002623 4.9e-15 84.0 96 51.0
Atru.chr8.1038_Atru.chr8.1039 Acer truncatum HOM05D002653 ORTHO05D002623 8.4e-15 83.2 96 51.0
THA.LOC104814962 Tarenaya hassleriana HOM05D002653 ORTHO05D002623 1.4e-14 82.4 96 51.0
CAN.G690.1 Capsicum annuum HOM05D002653 ORTHO05D002623 1.9e-14 82.0 93 52.7
HanXRQChr07g0186761 Helianthus annuus HOM05D002653 ORTHO05D002623 1.9e-14 82.0 96 51.0
Aa31LG11G3960 Aethionema arabicum HOM05D002653 ORTHO05D002623 2.4e-14 81.6 96 50.0
Carub.0006s2259 Capsella rubella HOM05D002653 ORTHO05D002623 2.4e-14 81.6 96 50.0
CARHR188760 Cardamine hirsuta HOM05D002653 ORTHO05D002623 2.4e-14 81.6 96 50.0
Thhalv10003500m.g Eutrema salsugineum HOM05D002653 ORTHO05D002623 2.4e-14 81.6 96 50.0
Sp2g22690 Schrenkiella parvula HOM05D002653 ORTHO05D002623 3.2e-14 81.3 96 49.0
Nitab4.5_0006025g0010 Nicotiana tabacum HOM05D002653 ORTHO05D002623 4.2e-14 80.9 93 51.6
Sopen11g020620 Solanum pennellii HOM05D002653 ORTHO05D002623 4.2e-14 80.9 93 50.5
AL6G36330 Arabidopsis lyrata HOM05D002653 ORTHO05D002623 7.1e-14 80.1 96 49.0
Ciclev10010886m.g Citrus clementina HOM05D002653 ORTHO05D002623 7.1e-14 80.1 96 50.0
Peaxi162Scf00126g00524 Petunia axillaris HOM05D002653 ORTHO05D002623 7.1e-14 80.1 93 51.6
AT5G24740 Arabidopsis thaliana HOM05D002653 ORTHO05D002623 9.3e-14 79.7 96 47.9
BcaNung01253 Brassica carinata HOM05D002653 ORTHO05D002623 1.2e-13 79.3 96 49.0
A06p35550 Brassica napus HOM05D002653 ORTHO05D002623 1.2e-13 79.3 96 49.0
C07p42990 Brassica napus HOM05D002653 ORTHO05D002623 1.2e-13 79.3 96 49.0
BolC7t44828H Brassica oleracea HOM05D002653 ORTHO05D002623 1.2e-13 79.3 96 49.0
BraA06t26480Z Brassica rapa HOM05D002653 ORTHO05D002623 1.2e-13 79.3 96 49.0
PSO063G3289 Papaver somniferum HOM05D002653 ORTHO05D002623 2.1e-13 78.6 95 48.4
arahy.Tifrunner.gnm1.ann1.U4FA7I Arachis hypogaea HOM05D002653 ORTHO05D002623 2.7e-13 78.2 96 53.1
HPP92_001355 Vanilla planifolia HOM05D002653 ORTHO05D002623 8.7e-12 73.2 96 44.8
ATR1155G033 Amborella trichopoda HOM05D002653 ORTHO05D002623 1.1e-11 72.8 96 46.9
Aqoxy2G01525 Aquilegia oxysepala HOM05D002653 ORTHO05D002623 5.6e-11 70.5 96 45.8
Aqoxy4G01176 Aquilegia oxysepala HOM05D002653 ORTHO05D002623 5.6e-11 70.5 96 45.8
Mapoly0009s0011 Marchantia polymorpha HOM05D002653 ORTHO05D002623 5.6e-11 70.5 96 43.8
Os08g0116566 Oryza sativa ssp. japonica HOM05D002653 ORTHO05D002623 1.6e-10 68.9 96 42.7
Zm00001eb260890 Zea mays HOM05D002653 ORTHO05D002623 2.1e-10 68.6 96 42.7
Gorai.012G024500 Gossypium raimondii HOM05D002653 ORTHO05D002623 3.7e-10 67.8 89 51.7
Haze_24503 Corylus avellana HOM05D002653 ORTHO05D002623 2.4e-09 65.1 64 57.8
arahy.Tifrunner.gnm1.ann1.Y0I0AR Arachis hypogaea HOM05D002653 ORTHO05D002623 6.9e-09 63.5 37 91.9
Pp3c15_25690 Physcomitrium patens HOM05D002653 ORTHO05D002623 6.9e-09 63.5 96 42.7
SMO353G0260 Selaginella moellendorffii HOM05D002653 ORTHO05D002623 3.4e-08 61.2 92 42.4
arahy.Tifrunner.gnm1.ann1.R57FTB Arachis hypogaea HOM05D004502 ORTHO05D002623 1.0e-07 59.7 33 97.0
Ca_09437_v3 Cicer arietinum L. HOM05D002653 ORTHO05D002623 1.0e-07 59.7 39 76.9
Ca_14756_v3 Cicer arietinum L. HOM05D002653 ORTHO05D002623 1.0e-07 59.7 39 76.9
HPP92_001361 Vanilla planifolia HOM05D002653 ORTHO05D002623 1.7e-07 58.9 49 59.2
SEGI_37137 Sequoiadendron giganteum HOM05D002653 ORTHO05D002623 8.4e-07 56.6 37 75.7
Actinidia28775 Actinidia chinensis HOM05D002313 ORTHO05D002623 4.2e-06 54.3 54 55.6
SalBow2G0206 Salvia bowleyana HOM05D007496 ORTHO05D009479 5.5e-06 53.9 37 78.4
Actinidia28844 Actinidia chinensis HOM05D002313 ORTHO05D002623 9.3e-06 53.1 35 74.3


User provided reference genes

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