Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.P39ID1 Arachis hypogaea HOM05D004854 ORTHO05D005854 2.4e-57 225.7 154 100.0
arahy.Tifrunner.gnm1.ann1.90PU0B Arachis hypogaea HOM05D004854 ORTHO05D005854 1.4e-49 199.9 162 88.3
arahy.Tifrunner.gnm1.ann1.63P7R9 Arachis hypogaea HOM05D000970 ORTHO05D000788 2.5e-38 162.5 145 89.0
arahy.Tifrunner.gnm1.ann1.9B8HPN Arachis hypogaea HOM05D004854 ORTHO05D005854 6.8e-28 127.9 70 95.7
arahy.Tifrunner.gnm1.ann1.P9UE85 Arachis hypogaea HOM05D004854 ORTHO05D005854 6.8e-28 127.9 70 95.7
Phvul.002G259300 Phaseolus vulgaris HOM05D004854 ORTHO05D005854 2.7e-24 115.9 74 79.7
Glyma.05G174300 Glycine max HOM05D004854 ORTHO05D005854 7.8e-24 114.4 74 81.1
Glyma.08G131500 Glycine max HOM05D004854 ORTHO05D005854 5.1e-23 111.7 74 78.4
Ca_17781_v3 Cicer arietinum L. HOM05D004854 ORTHO05D005854 1.9e-22 109.8 74 75.7
Psat7g058720 Pisum sativum HOM05D004854 ORTHO05D005854 3.3e-22 109.0 74 75.7
Medtr8g089790 Medicago truncatula HOM05D004854 ORTHO05D005854 4.8e-21 105.1 74 73.0
VMungo0251G0447 Vigna mungo HOM05D004854 ORTHO05D005854 4.8e-21 105.1 72 72.2
arahy.Tifrunner.gnm1.ann1.XNR1AK Arachis hypogaea HOM05D004854 ORTHO05D005854 8.1e-21 104.4 69 76.8
Sc26g0002890 Simmondsia chinensis HOM05D004854 ORTHO05D005854 2.4e-20 102.8 72 70.8
arahy.Tifrunner.gnm1.ann1.AP25S4 Arachis hypogaea HOM05D004854 ORTHO05D005854 4.0e-20 102.1 69 75.4
BraA02t05931Z Brassica rapa HOM05D004854 ORTHO05D005854 6.9e-20 101.3 70 71.4
AL8G33260 Arabidopsis lyrata HOM05D004854 ORTHO05D005854 9.0e-20 100.9 70 71.4
BcaC04g19981 Brassica carinata HOM05D004854 ORTHO05D005854 9.0e-20 100.9 70 71.4
A02p08620 Brassica napus HOM05D004854 ORTHO05D005854 1.5e-19 100.1 69 72.5
Thhalv10026301m.g Eutrema salsugineum HOM05D004854 ORTHO05D005854 1.5e-19 100.1 72 70.8
MSTRG.26532 Avicennia marina HOM05D004854 ORTHO05D005854 2.0e-19 99.8 72 68.1
Cpa.g.sc95.32 Carica papaya HOM05D004854 ORTHO05D005854 2.0e-19 99.8 73 68.5
Oeu000974.1 Olea europaea HOM05D004854 ORTHO05D005854 2.0e-19 99.8 72 69.4
CAN.G86.2 Capsicum annuum HOM05D004854 ORTHO05D005854 2.6e-19 99.4 68 72.1
Migut.J00819 Erythranthe guttata HOM05D004854 ORTHO05D005854 2.6e-19 99.4 73 67.1
Sed0001835 Sechium edule HOM05D004854 ORTHO05D005854 2.6e-19 99.4 70 68.6
Sp6g19020 Schrenkiella parvula HOM05D004854 ORTHO05D005854 3.4e-19 99.0 70 71.4
CANSAT11G1984 Cannabis sativa HOM05D004854 ORTHO05D005854 4.4e-19 98.6 69 71.0
BcaC03g14166 Brassica carinata HOM05D004854 ORTHO05D005854 5.8e-19 98.2 70 68.6
unitig_899.g15189 Utricularia gibba HOM05D004854 ORTHO05D005854 5.8e-19 98.2 70 70.0
Sed0005886 Sechium edule HOM05D004854 ORTHO05D005854 7.6e-19 97.8 70 68.6
AL7G27120 Arabidopsis lyrata HOM05D004854 ORTHO05D005854 9.9e-19 97.4 70 70.0
MSTRG.19386 Avicennia marina HOM05D004854 ORTHO05D005854 9.9e-19 97.4 73 69.9
Oeu064534.1 Olea europaea HOM05D004854 ORTHO05D005854 9.9e-19 97.4 70 71.4
BcaB05g22334 Brassica carinata HOM05D004854 ORTHO05D005854 1.3e-18 97.1 70 70.0
Carub.0008s1780 Capsella rubella HOM05D004854 ORTHO05D005854 1.3e-18 97.1 70 68.6
Lj6g0003516 Lotus japonicus HOM05D004854 ORTHO05D005854 1.3e-18 97.1 70 68.6
MELO3C003999.2 Cucumis melo HOM05D004854 ORTHO05D005854 1.7e-18 96.7 70 67.1
SEGI_03932 Sequoiadendron giganteum HOM05D004854 ORTHO05D005854 1.7e-18 96.7 71 63.4
Lj4g0022898 Lotus japonicus HOM05D004854 ORTHO05D005854 2.2e-18 96.3 70 71.4
BolC9t57762H Brassica oleracea HOM05D004854 ORTHO05D005854 2.9e-18 95.9 68 72.1
BraA10t43555Z Brassica rapa HOM05D004854 ORTHO05D005854 2.9e-18 95.9 68 72.1
Atru.chr12.1305 Acer truncatum HOM05D004854 ORTHO05D005854 3.8e-18 95.5 71 66.2
CARHR233360 Cardamine hirsuta HOM05D004854 ORTHO05D005854 3.8e-18 95.5 72 68.1
CsaV3_2G008580 Cucumis sativus L. HOM05D004854 ORTHO05D005854 3.8e-18 95.5 69 68.1
QL11p004841 Quercus lobata HOM05D004854 ORTHO05D005854 3.8e-18 95.5 70 71.4
CDE05G0266 Ceratophyllum demersum HOM05D000177 ORTHO05D008165 4.9e-18 95.1 67 71.6
CDE05G2165 Ceratophyllum demersum HOM05D004854 ORTHO05D005854 4.9e-18 95.1 67 71.6
Sp7g23910 Schrenkiella parvula HOM05D004854 ORTHO05D005854 4.9e-18 95.1 70 68.6
THA.LOC104813509 Tarenaya hassleriana HOM05D004854 ORTHO05D005854 4.9e-18 95.1 70 68.6
vmacro20836 Vaccinium macrocarpon HOM05D004854 ORTHO05D005854 4.9e-18 95.1 69 71.0
Carub.0007s1506 Capsella rubella HOM05D004854 ORTHO05D005854 6.4e-18 94.7 72 68.1
ClCG11G011930 Citrullus lanatus HOM05D004854 ORTHO05D005854 8.4e-18 94.4 70 65.7
Lalb_Chr13g0295841 Lupinus albus HOM05D004854 ORTHO05D005854 8.4e-18 94.4 70 70.0
AT4G25890 Arabidopsis thaliana HOM05D004854 ORTHO05D005854 1.1e-17 94.0 70 65.7
Dinv26446 Davidia involucrata HOM05D004854 ORTHO05D005854 1.1e-17 94.0 68 69.1
Lalb_Chr07g0185421 Lupinus albus HOM05D004854 ORTHO05D005854 1.1e-17 94.0 69 72.5
Prupe.1G079500 Prunus persica HOM05D004854 ORTHO05D005854 1.1e-17 94.0 70 65.7
Solyc07g009330.4 Solanum lycopersicum HOM05D004854 ORTHO05D005854 1.1e-17 94.0 68 72.1
PGSC0003DMG400008513 Solanum tuberosum HOM05D004854 ORTHO05D005854 1.1e-17 94.0 68 72.1
SGA_v2.0_scaffold21G09635 Striga asiatica HOM05D004854 ORTHO05D005854 1.1e-17 94.0 71 66.2
A10p14720 Brassica napus HOM05D004854 ORTHO05D005854 1.4e-17 93.6 68 70.6
C09p49130 Brassica napus HOM05D004854 ORTHO05D005854 1.4e-17 93.6 68 70.6
C02p14390 Brassica napus HOM05D004854 ORTHO05D005854 1.9e-17 93.2 68 69.1
BolC2t07563H Brassica oleracea HOM05D004854 ORTHO05D005854 1.9e-17 93.2 68 69.1
Ciclev10002863m.g Citrus clementina HOM05D004854 ORTHO05D005854 1.9e-17 93.2 74 64.9
PGR142G3975 Punica granatum HOM05D004854 ORTHO05D005854 1.9e-17 93.2 74 62.2
Thhalv10015037m.g Eutrema salsugineum HOM05D004854 ORTHO05D005854 2.4e-17 92.8 70 65.7
THA.LOC104811780 Tarenaya hassleriana HOM05D004854 ORTHO05D005854 2.4e-17 92.8 70 65.7
Zm00001eb226990 Zea mays HOM05D004854 ORTHO05D005854 2.4e-17 92.8 70 67.1
Actinidia29956 Actinidia chinensis HOM05D004854 ORTHO05D005854 3.2e-17 92.4 71 63.4
MBI13_g31550_MAGBIO Magnolia biondii HOM05D004854 ORTHO05D005854 3.2e-17 92.4 68 67.6
Peaxi162Scf00324g00719 Petunia axillaris HOM05D004854 ORTHO05D005854 3.2e-17 92.4 68 70.6
Sopen07g005080 Solanum pennellii HOM05D004854 ORTHO05D005854 3.2e-17 92.4 68 70.6
Eucgr.C02261 Eucalyptus grandis HOM05D004854 ORTHO05D005854 4.2e-17 92.0 67 73.1
Eucgr.C02263 Eucalyptus grandis HOM05D004854 ORTHO05D005854 4.2e-17 92.0 67 73.1
TWI38G2070 Tripterygium wilfordii HOM05D004854 ORTHO05D005854 4.2e-17 92.0 70 68.6
GSVIVG01010910001 Vitis vinifera HOM05D004854 ORTHO05D005854 4.2e-17 92.0 67 68.7
AT5G57290 Arabidopsis thaliana HOM05D004854 ORTHO05D005854 5.4e-17 91.7 65 70.8
DCAR_003035 Daucus carota HOM05D004854 ORTHO05D005854 5.4e-17 91.7 71 67.6
Oeu044701.1 Olea europaea HOM05D004854 ORTHO05D005854 5.4e-17 91.7 70 65.7
TPR.G6298 Trifolium pratense HOM05D004854 ORTHO05D005854 5.4e-17 91.7 68 69.1
HanXRQChr10g0297881 Helianthus annuus HOM05D004854 ORTHO05D005854 7.1e-17 91.3 70 65.7
MD16G1253100 Malus domestica HOM05D004854 ORTHO05D005854 7.1e-17 91.3 70 65.7
Nitab4.5_0000074g0010 Nicotiana tabacum HOM05D004854 ORTHO05D005854 7.1e-17 91.3 68 69.1
Nitab4.5_0012849g0010 Nicotiana tabacum HOM05D004854 ORTHO05D005854 7.1e-17 91.3 68 69.1
CARHR271090 Cardamine hirsuta HOM05D004854 ORTHO05D005854 9.3e-17 90.9 70 64.3
Potri.003G010200 Populus trichocarpa HOM05D004854 ORTHO05D005854 9.3e-17 90.9 71 70.4
Potri.009G032600 Populus trichocarpa HOM05D004854 ORTHO05D005854 9.3e-17 90.9 71 69.0
Rhsim01G0120500 Rhododendron simsii HOM05D004854 ORTHO05D005854 9.3e-17 90.9 67 70.1
SGA_v2.0_scaffold41G15867 Striga asiatica HOM05D004854 ORTHO05D005854 9.3e-17 90.9 70 64.3
CiPaw.08G034100 Carya illinoinensis HOM05D004854 ORTHO05D005854 1.2e-16 90.5 70 67.1
CSS0022850 Camellia sinensis var. sinensis HOM05D004854 ORTHO05D005854 1.6e-16 90.1 67 68.7
ECA247G3496 Erigeron canadensis HOM05D004854 ORTHO05D005854 1.6e-16 90.1 70 64.3
PSO423G0276 Papaver somniferum HOM05D004854 ORTHO05D005854 1.6e-16 90.1 72 59.7
TWI38G1790 Tripterygium wilfordii HOM05D004854 ORTHO05D005854 1.6e-16 90.1 72 63.9
AUR62034880 Chenopodium quinoa HOM05D004854 ORTHO05D005854 2.1e-16 89.7 70 61.4
Manes.06G021300 Manihot esculenta HOM05D004854 ORTHO05D005854 2.1e-16 89.7 69 71.0
Oeu044703.1 Olea europaea HOM05D004854 ORTHO05D005854 2.1e-16 89.7 68 67.6
Ah.16g108570 Amaranthus hybridus HOM05D004854 ORTHO05D005854 2.7e-16 89.4 70 61.4
BcaB08g36089 Brassica carinata HOM05D004854 ORTHO05D005854 2.7e-16 89.4 71 64.8
Duzib150G0904 Durio zibethinus HOM05D004854 ORTHO05D005854 2.7e-16 89.4 68 67.6
Gohir.A05G003400 Gossypium hirsutum HOM05D004854 ORTHO05D005854 2.7e-16 89.4 69 66.7
Gohir.D05G003800 Gossypium hirsutum HOM05D004854 ORTHO05D005854 2.7e-16 89.4 69 66.7
Gorai.009G003400 Gossypium raimondii HOM05D004854 ORTHO05D005854 2.7e-16 89.4 69 66.7
AUR62026626 Chenopodium quinoa HOM05D004854 ORTHO05D005854 3.5e-16 89.0 70 61.4
Dinv25401 Davidia involucrata HOM05D004854 ORTHO05D005854 3.5e-16 89.0 69 62.3
TWI18G0069 Tripterygium wilfordii HOM05D004854 ORTHO05D005854 3.5e-16 89.0 69 68.1
Cc06_g22110 Coffea canephora HOM05D004854 ORTHO05D005854 4.6e-16 88.6 68 64.7
Eucgr.A01410 Eucalyptus grandis HOM05D004854 ORTHO05D005854 4.6e-16 88.6 67 70.1
Lsat_1_v5_gn_9_31040 Lactuca sativa HOM05D004854 ORTHO05D005854 4.6e-16 88.6 70 62.9
Os06g0701400 Oryza sativa ssp. japonica HOM05D004854 ORTHO05D005854 4.6e-16 88.6 70 64.3
SalBow5G3614 Salvia bowleyana HOM05D004854 ORTHO05D005854 6.0e-16 88.2 70 65.7
TAR625G0051 Trochodendron aralioides HOM05D004854 ORTHO05D005854 6.0e-16 88.2 67 68.7
Actinidia39348 Actinidia chinensis HOM05D000406 ORTHO05D003425 7.9e-16 87.8 67 67.2
Os01g0231700 Oryza sativa ssp. japonica HOM05D004854 ORTHO05D005854 7.9e-16 87.8 70 62.9
PSO596G0050 Papaver somniferum HOM05D004854 ORTHO05D005854 7.9e-16 87.8 72 59.7
PGR044G2628 Punica granatum HOM05D004854 ORTHO05D005854 7.9e-16 87.8 68 66.2
PGR109G0004 Punica granatum HOM05D004854 ORTHO05D005854 7.9e-16 87.8 68 66.2
Ah.05g168230 Amaranthus hybridus HOM05D004854 ORTHO05D005854 1.3e-15 87.0 70 60.0
FvH4_4g07630 Fragaria vesca HOM05D004854 ORTHO05D005854 1.3e-15 87.0 67 65.7
FAN07G2001 Fragaria x ananassa HOM05D004854 ORTHO05D005854 1.3e-15 87.0 67 65.7
FAN12G2445 Fragaria x ananassa HOM05D004854 ORTHO05D005854 1.3e-15 87.0 67 65.7
FAN17G2475 Fragaria x ananassa HOM05D004854 ORTHO05D005854 1.3e-15 87.0 67 65.7
FAN22G0664 Fragaria x ananassa HOM05D004854 ORTHO05D005854 1.3e-15 87.0 69 62.3
Hund26676 Selenicereus undatus HOM05D004854 ORTHO05D005854 1.3e-15 87.0 71 56.3
Cfa013427 Carpinus fangiana HOM05D004854 ORTHO05D005854 1.7e-15 86.7 67 67.2
Dinv25400 Davidia involucrata HOM05D004854 ORTHO05D005854 1.7e-15 86.7 66 65.2
Sabra03G0005200 Salix brachista HOM05D004854 ORTHO05D005854 1.7e-15 86.7 70 68.6
MD13G1245200 Malus domestica HOM05D004854 ORTHO05D005854 3.0e-15 85.9 70 60.0
Aa31LG3G13170 Aethionema arabicum HOM05D004854 ORTHO05D005854 5.1e-15 85.1 70 60.0
Zm00001eb272850 Zea mays HOM05D004854 ORTHO05D005854 6.6e-15 84.7 69 63.8
PSO596G0067 Papaver somniferum HOM05D004854 ORTHO05D005854 8.7e-15 84.3 74 58.1
Sabra09G0023200 Salix brachista HOM05D004854 ORTHO05D005854 8.7e-15 84.3 68 69.1
HPP92_026146 Vanilla planifolia HOM05D003573 ORTHO05D004204 1.5e-14 83.6 67 61.2
PSO423G0052 Papaver somniferum HOM05D004854 ORTHO05D005854 1.9e-14 83.2 74 58.1
Thecc.09G180300 Theobroma cacao HOM05D004854 ORTHO05D005854 1.9e-14 83.2 69 59.4
ATR0626G247 Amborella trichopoda HOM05D004854 ORTHO05D005854 3.3e-14 82.4 62 67.7
RcHm_v2.0_Chr4g0400241 Rosa chinensis HOM05D004854 ORTHO05D005854 4.3e-14 82.0 67 64.2
SGA_v2.0_scaffold46G17340 Striga asiatica HOM05D004854 ORTHO05D005854 7.3e-14 81.3 74 58.1
Thecc.01G294400 Theobroma cacao HOM05D004854 ORTHO05D005854 9.6e-14 80.9 71 54.9
TAR636G3485 Trochodendron aralioides HOM05D004854 ORTHO05D005854 1.6e-13 80.1 60 66.7
RcHm_v2.0_Chr1g0341131 Rosa chinensis HOM05D004854 ORTHO05D005854 2.8e-13 79.3 67 62.7
Migut.L01900 Erythranthe guttata HOM05D004854 ORTHO05D005854 3.6e-13 79.0 61 63.9
SHI02877 Sapria himalayana HOM05D004681 ORTHO05D005541 8.1e-13 77.8 66 62.1
C03p15060 Brassica napus HOM05D004854 ORTHO05D005854 1.4e-12 77.0 67 61.2
Pp3c22_2920 Physcomitrium patens HOM05D004854 ORTHO05D005854 1.4e-12 77.0 72 54.2
Pp3c21_16160 Physcomitrium patens HOM05D004854 ORTHO05D005854 2.4e-12 76.3 72 52.8
Mapoly0006s0174 Marchantia polymorpha HOM05D004854 ORTHO05D005854 7.6e-11 71.2 72 45.8
BolC3t13948H Brassica oleracea HOM05D004854 ORTHO05D005854 1.1e-09 67.4 54 66.7
Nn2g12744 Nelumbo nucifera HOM05D004854 ORTHO05D005854 3.5e-08 62.4 46 65.2
SMO172G0233 Selaginella moellendorffii HOM05D004854 ORTHO05D005854 7.9e-08 61.2 70 40.0
Duzib170G0267 Durio zibethinus HOM05D004854 ORTHO05D005854 3.3e-06 55.8 42 61.9
COL.COLO4_25466 Corchorus olitorius HOM05D004854 ORTHO05D005854 5.6e-06 55.1 42 59.5


User provided reference genes

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