Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.NX1DPE Arachis hypogaea HOM05D005990 ORTHO05D007908 6.1e-211 737.3 379 100.0
arahy.Tifrunner.gnm1.ann1.3KJ3XQ Arachis hypogaea HOM05D005990 ORTHO05D007908 1.4e-207 726.1 379 98.9
Lj3g0001925 Lotus japonicus HOM05D005990 ORTHO05D007908 1.0e-133 480.7 375 71.2
Glyma.12G147300 Glycine max HOM05D005990 ORTHO05D007908 1.5e-132 476.9 379 71.5
Glyma.06G254100 Glycine max HOM05D005990 ORTHO05D007908 4.0e-130 468.8 379 70.7
VMungo1127G2019 Vigna mungo HOM05D005990 ORTHO05D007908 6.9e-130 468.0 379 71.0
Ca_11848_v3 Cicer arietinum L. HOM05D005990 ORTHO05D007908 3.2e-127 459.1 383 68.9
Phvul.011G155100 Phaseolus vulgaris HOM05D005990 ORTHO05D007908 3.2e-127 459.1 380 70.3
Lalb_Chr01g0006431 Lupinus albus HOM05D005990 ORTHO05D007908 3.8e-120 435.6 336 74.7
Medtr8g464410 Medicago truncatula HOM05D005990 ORTHO05D007908 9.6e-116 421.0 380 66.3
QL08p018038 Quercus lobata HOM05D005990 ORTHO05D007908 5.3e-114 415.2 394 63.2
CiPaw.11G176500 Carya illinoinensis HOM05D005990 ORTHO05D007908 2.7e-110 402.9 399 62.9
Manes.03G116500 Manihot esculenta HOM05D005990 ORTHO05D007908 6.0e-110 401.7 388 62.6
Cfa020505 Carpinus fangiana HOM05D005990 ORTHO05D007908 1.0e-109 401.0 393 62.8
Potri.001G406700 Populus trichocarpa HOM05D005990 ORTHO05D007908 3.9e-109 399.1 387 62.3
CANSAT11G2493 Cannabis sativa HOM05D005990 ORTHO05D007908 1.6e-107 393.7 392 61.2
Dinv22366 Davidia involucrata HOM05D005990 ORTHO05D007908 6.3e-107 391.7 354 66.7
Prupe.4G189900 Prunus persica HOM05D005990 ORTHO05D007908 6.3e-107 391.7 396 60.9
TAR626G1157 Trochodendron aralioides HOM05D005990 ORTHO05D007908 2.4e-106 389.8 389 62.5
Sabra16G0270400 Salix brachista HOM05D005990 ORTHO05D007908 6.9e-106 388.3 413 58.6
Sabra16G0268100 Salix brachista HOM05D005990 ORTHO05D007908 1.2e-105 387.5 415 59.0
PGR031G1979 Punica granatum HOM05D005990 ORTHO05D007908 2.0e-105 386.7 393 61.1
FvH4_3g20940 Fragaria vesca HOM05D005990 ORTHO05D007908 7.6e-105 384.8 397 59.7
CSS0030462 Camellia sinensis var. sinensis HOM05D005990 ORTHO05D007908 1.0e-104 384.4 356 63.8
Cpa.g.sc80.114 Carica papaya HOM05D005990 ORTHO05D007908 1.0e-104 384.4 393 61.3
MELO3C016553.2 Cucumis melo HOM05D005990 ORTHO05D007908 1.0e-104 384.4 381 62.5
CsaV3_3G005970 Cucumis sativus L. HOM05D005990 ORTHO05D007908 1.0e-104 384.4 323 69.0
TPR.G39565 Trifolium pratense HOM05D005990 ORTHO05D007908 1.3e-104 384.0 375 60.5
Duzib213G0189 Durio zibethinus HOM05D005990 ORTHO05D007908 2.9e-104 382.9 325 69.2
Sed0021962 Sechium edule HOM05D005990 ORTHO05D007908 3.8e-104 382.5 395 60.0
ClCG10G006520 Citrullus lanatus HOM05D005990 ORTHO05D007908 5.0e-104 382.1 323 69.0
Actinidia35278 Actinidia chinensis HOM05D005990 ORTHO05D007908 6.5e-104 381.7 394 59.4
Hma1.2p1_1143F.1_g261060 Hydrangea macrophylla HOM05D005990 ORTHO05D007908 6.5e-104 381.7 296 73.3
MBI02_g35910_MAGBIO Magnolia biondii HOM05D005990 ORTHO05D007908 1.4e-103 380.6 332 66.6
FAN11G3728 Fragaria x ananassa HOM05D005990 ORTHO05D007908 1.9e-103 380.2 391 60.1
Nn1g06745 Nelumbo nucifera HOM05D005990 ORTHO05D007908 1.9e-103 380.2 327 68.8
Thecc.07G071400 Theobroma cacao HOM05D005990 ORTHO05D007908 5.5e-103 378.6 359 64.1
RcHm_v2.0_Chr5g0035361 Rosa chinensis HOM05D005990 ORTHO05D007908 7.2e-103 378.3 327 67.6
COL.COLO4_09478 Corchorus olitorius HOM05D005990 ORTHO05D007908 1.2e-102 377.5 326 69.0
RhsimUnG0258900 Rhododendron simsii HOM05D005990 ORTHO05D007908 4.6e-102 375.6 368 61.1
GSVIVG01014430001 Vitis vinifera HOM05D005990 ORTHO05D007908 6.1e-102 375.2 380 61.8
Gohir.D13G148400 Gossypium hirsutum HOM05D005990 ORTHO05D007908 7.9e-102 374.8 320 68.8
Gorai.013G166200 Gossypium raimondii HOM05D005990 ORTHO05D007908 7.9e-102 374.8 320 68.8
HanXRQChr05g0156471 Helianthus annuus HOM05D005990 ORTHO05D007908 7.9e-102 374.8 372 60.8
Ciclev10009149m.g Citrus clementina HOM05D005990 ORTHO05D007908 1.4e-101 374.0 299 71.6
Lj8A160T67 Lonicera japonica HOM05D005990 ORTHO05D007908 1.4e-101 374.0 296 72.0
MD11G1237300 Malus domestica HOM05D005990 ORTHO05D007908 1.8e-101 373.6 330 66.4
Nitab4.5_0008686g0040 Nicotiana tabacum HOM05D005990 ORTHO05D007908 1.8e-101 373.6 370 60.8
Lsat_1_v5_gn_5_6860 Lactuca sativa HOM05D005990 ORTHO05D007908 2.3e-101 373.2 360 61.9
Sc16g0006780 Simmondsia chinensis HOM05D005990 ORTHO05D007908 2.3e-101 373.2 334 65.6
Gohir.A13G143600 Gossypium hirsutum HOM05D005990 ORTHO05D007908 5.1e-101 372.1 321 68.2
ECA246G2706 Erigeron canadensis HOM05D005990 ORTHO05D007908 1.5e-100 370.5 336 64.6
Atru.chr2.2820 Acer truncatum HOM05D005990 ORTHO05D007908 2.5e-100 369.8 383 60.3
PGSC0003DMG402019249 Solanum tuberosum HOM05D005990 ORTHO05D007908 2.5e-100 369.8 370 61.1
Cc05_g12670 Coffea canephora HOM05D005990 ORTHO05D007908 5.7e-100 368.6 352 62.2
AUR62029313 Chenopodium quinoa HOM05D005990 ORTHO05D007908 7.4e-100 368.2 298 70.5
Nitab4.5_0000297g0120 Nicotiana tabacum HOM05D005990 ORTHO05D007908 2.2e-99 366.7 367 59.7
Sopen07g031750 Solanum pennellii HOM05D005990 ORTHO05D007908 2.2e-99 366.7 324 65.7
Solyc07g063570.4 Solanum lycopersicum HOM05D005990 ORTHO05D007908 2.8e-99 366.3 356 62.4
Aqoxy4G01398 Aquilegia oxysepala HOM05D005990 ORTHO05D007908 3.7e-99 365.9 363 62.0
FAN21G0316 Fragaria x ananassa HOM05D005990 ORTHO05D007908 3.7e-99 365.9 398 57.5
AUR62015602 Chenopodium quinoa HOM05D005990 ORTHO05D007908 1.1e-98 364.4 298 70.1
BcaB05g22125 Brassica carinata HOM05D005990 ORTHO05D007908 2.4e-98 363.2 395 59.2
Os11g0140800 Oryza sativa ssp. japonica HOM05D005990 ORTHO05D007908 3.1e-98 362.8 324 66.0
ATR0751G163 Amborella trichopoda HOM05D005990 ORTHO05D007908 4.1e-98 362.5 294 69.7
PSO210G5100 Papaver somniferum HOM05D005990 ORTHO05D007908 5.3e-98 362.1 338 63.3
BcaC03g14345 Brassica carinata HOM05D005990 ORTHO05D007908 1.2e-97 360.9 396 58.3
Sp6g16330 Schrenkiella parvula HOM05D005990 ORTHO05D007908 1.2e-97 360.9 395 58.7
C02p17170 Brassica napus HOM05D005990 ORTHO05D007908 2.0e-97 360.1 396 58.3
Aa31LG3G10250 Aethionema arabicum HOM05D005990 ORTHO05D007908 3.4e-97 359.4 393 57.5
A02p10420 Brassica napus HOM05D005990 ORTHO05D007908 3.4e-97 359.4 397 58.2
THA.LOC104811848 Tarenaya hassleriana HOM05D005990 ORTHO05D007908 3.4e-97 359.4 323 67.8
MSTRG.15206 Avicennia marina HOM05D005990 ORTHO05D007908 5.9e-97 358.6 376 57.4
CDE05G0179 Ceratophyllum demersum HOM05D005990 ORTHO05D007908 1.0e-96 357.8 329 63.8
CARHR267580 Cardamine hirsuta HOM05D005990 ORTHO05D007908 1.7e-96 357.1 334 64.7
AT5G54290 Arabidopsis thaliana HOM05D005990 ORTHO05D007908 2.2e-96 356.7 392 57.7
BolC2t07817H Brassica oleracea HOM05D005990 ORTHO05D007908 2.2e-96 356.7 304 68.4
AL8G29620 Arabidopsis lyrata HOM05D005990 ORTHO05D007908 2.9e-96 356.3 393 57.0
Zm00001eb093260 Zea mays HOM05D005990 ORTHO05D007908 3.8e-96 355.9 325 64.9
BraA02t06108Z Brassica rapa HOM05D005990 ORTHO05D007908 8.5e-96 354.8 304 68.1
Thhalv10013940m.g Eutrema salsugineum HOM05D005990 ORTHO05D007908 1.9e-95 353.6 394 57.9
Migut.M01860 Erythranthe guttata HOM05D005990 ORTHO05D007908 2.5e-95 353.2 374 57.8
Carub.0008s1464 Capsella rubella HOM05D005990 ORTHO05D007908 3.6e-94 349.4 393 56.5
Eucgr.F03355 Eucalyptus grandis HOM05D005990 ORTHO05D007908 4.7e-94 349.0 354 60.2
Hma1.2p1_1143F.1_g261070 Hydrangea macrophylla HOM05D005990 ORTHO05D007908 4.4e-92 342.4 197 91.9
unitig_46.g18327 Utricularia gibba HOM05D005990 ORTHO05D007908 1.3e-91 340.9 306 62.7
HPP92_018217 Vanilla planifolia HOM05D005990 ORTHO05D007908 2.4e-90 336.7 288 67.4
Haze_09528 Corylus avellana HOM05D005990 ORTHO05D007908 3.1e-90 336.3 352 60.5
Peaxi162Scf01216g00051 Petunia axillaris HOM05D005990 ORTHO05D007908 2.6e-89 333.2 308 62.3
SalBow7G3955 Salvia bowleyana HOM05D005990 ORTHO05D007908 3.8e-88 329.3 427 50.1
FAN16G0288 Fragaria x ananassa HOM05D005990 ORTHO05D007908 1.6e-86 323.9 366 56.0
QL08p017936 Quercus lobata HOM05D005990 ORTHO05D007908 1.7e-83 313.9 332 60.8
SGA_v2.0_scaffold9G04955 Striga asiatica HOM05D005990 ORTHO05D007908 1.1e-82 311.2 320 57.8
DCAR_008702 Daucus carota HOM05D005990 ORTHO05D007908 1.2e-81 307.8 309 60.5
Ah.04g165420 Amaranthus hybridus HOM05D005990 ORTHO05D007908 2.0e-81 307.0 343 56.0
vmacro09559 Vaccinium macrocarpon HOM05D005990 ORTHO05D007908 3.5e-81 306.2 326 58.0
SMO119G0067 Selaginella moellendorffii HOM05D005990 ORTHO05D007908 1.7e-80 303.9 292 59.9
AagrBONN_evm.TU.Sc2ySwM_344.980 Anthoceros agrestis HOM05D005990 ORTHO05D007908 3.8e-80 302.8 340 56.2
CAN.G162.104 Capsicum annuum HOM05D005990 ORTHO05D007908 3.8e-80 302.8 300 58.7
TWI38G1683 Tripterygium wilfordii HOM05D005990 ORTHO05D007908 7.2e-79 298.5 325 57.8
Psat0s617g0120 Pisum sativum HOM05D005990 ORTHO05D007908 1.2e-78 297.7 310 60.3
EL10Ac4g08059 Beta vulgaris HOM05D005990 ORTHO05D007908 3.6e-78 296.2 363 54.3
MBI02_g10990_MAGBIO Magnolia biondii HOM05D005990 ORTHO05D007908 4.7e-78 295.8 256 67.2
Mapoly0093s0077 Marchantia polymorpha HOM05D005990 ORTHO05D007908 6.1e-78 295.4 287 60.6
PSO832G2166 Papaver somniferum HOM05D005990 ORTHO05D007908 6.3e-75 285.4 304 58.9
Oeu055680.2 Olea europaea HOM05D005990 ORTHO05D007908 9.1e-74 281.6 295 58.3
Pp3c15_16730 Physcomitrium patens HOM05D005990 ORTHO05D007908 2.7e-73 280.0 314 53.8
CBR_g16976 Chara braunii HOM05D005990 ORTHO05D007908 6.1e-62 242.3 287 51.9
MBI02_g26442_MAGBIO Magnolia biondii HOM05D005990 ORTHO05D007908 1.0e-53 214.9 276 51.8
Cre07.g357800 Chlamydomonas reinhardtii HOM05D005990 ORTHO05D007908 1.2e-52 211.5 186 59.7
Actinidia18746 Actinidia chinensis HOM05D005990 ORTHO05D007908 1.7e-51 207.6 277 52.7
C03p17200 Brassica napus HOM05D005990 ORTHO05D007908 9.2e-50 201.8 263 52.1
PRCOL_00006006 Prasinoderma coloniale HOM05D005990 ORTHO05D007908 1.3e-48 198.0 184 57.6
BcaC01g06300 Brassica carinata HOM05D005990 ORTHO05D007908 1.9e-47 194.1 140 79.3
BolC3t14134H Brassica oleracea HOM05D005990 ORTHO05D007908 1.2e-46 191.4 263 51.3
MCO16G378 Micromonas commoda HOM05D005990 ORTHO05D007908 1.6e-46 191.0 186 58.1
AagrBONN_evm.TU.Sc2ySwM_117.2025 Anthoceros agrestis HOM05D005990 ORTHO05D007908 2.6e-44 183.7 206 54.9
Hma1.2p1_1302F.1_g274280 Hydrangea macrophylla HOM05D005990 ORTHO05D007908 1.2e-41 174.9 142 71.1
Haze_08411 Corylus avellana HOM05D005990 ORTHO05D007908 1.2e-38 164.9 130 73.1
Os12g0137300 Oryza sativa ssp. japonica HOM05D005990 ORTHO05D007908 8.3e-35 152.1 201 50.7
SEGI_31484 Sequoiadendron giganteum HOM05D005990 ORTHO05D007908 1.2e-33 148.3 93 83.9
CSS0033016 Camellia sinensis var. sinensis HOM05D005990 ORTHO05D043356 8.6e-32 142.1 157 56.1
MD03G1219200 Malus domestica HOM05D005990 ORTHO05D007908 1.1e-31 141.7 159 58.5
CSS0043364 Camellia sinensis var. sinensis HOM05D005990 ORTHO05D043356 2.5e-31 140.6 157 55.4
SEGI_00968 Sequoiadendron giganteum HOM05D005990 ORTHO05D007908 4.9e-27 126.3 168 51.2
HPP92_027972 Vanilla planifolia HOM05D005990 ORTHO05D007908 1.5e-20 104.8 80 70.0
Sopen08g023060 Solanum pennellii HOM05D003334 ORTHO05D004076 1.6e-17 94.7 96 58.3
Solyc05g150137.1 Solanum lycopersicum HOM05D005990 ORTHO05D391672 1.1e-15 88.6 60 75.0
HanXRQChr12g0381681 Helianthus annuus HOM05D005990 ORTHO05D221923 3.1e-13 80.5 225 32.9
Sopen10g004100 Solanum pennellii HOM05D005990 ORTHO05D000950 2.9e-11 73.9 47 80.9
HPP92_027973 Vanilla planifolia HOM05D005990 ORTHO05D007908 1.1e-07 62.0 120 40.8


User provided reference genes

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