Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.NKB3PQ Arachis hypogaea HOM05D006224 ORTHO05D007691 2.1e-216 755.4 378 100.0
arahy.Tifrunner.gnm1.ann1.X15ZNM Arachis hypogaea HOM05D006224 ORTHO05D007691 9.3e-212 740.0 378 95.5
Medtr6g086510 Medicago truncatula HOM05D006224 ORTHO05D007691 4.0e-154 548.5 364 75.3
Lalb_Chr14g0371331 Lupinus albus HOM05D006224 ORTHO05D007691 6.8e-154 547.7 379 72.6
VMungo0464G0392 Vigna mungo HOM05D006224 ORTHO05D007691 1.9e-151 539.7 376 71.3
Ca_30117_v3 Cicer arietinum L. HOM05D006224 ORTHO05D007691 6.0e-150 534.6 348 75.0
Glyma.09G187600 Glycine max HOM05D006224 ORTHO05D007691 6.0e-150 534.6 378 69.3
Lj2g0020407 Lotus japonicus HOM05D006224 ORTHO05D007691 2.5e-148 529.3 376 70.7
Phvul.004G160700 Phaseolus vulgaris HOM05D006224 ORTHO05D007691 7.3e-148 527.7 376 69.7
Glyma.18G076000 Glycine max HOM05D006224 ORTHO05D007691 1.2e-147 526.9 376 69.9
Psat1g037920 Pisum sativum HOM05D006224 ORTHO05D007691 1.5e-137 493.4 300 78.7
QL02p086060 Quercus lobata HOM05D006224 ORTHO05D007691 2.6e-137 492.7 372 65.9
QL02p086023 Quercus lobata HOM05D006224 ORTHO05D007691 4.1e-135 485.3 372 65.6
Dinv41578 Davidia involucrata HOM05D006224 ORTHO05D007691 7.1e-135 484.6 330 69.1
Ca_25513_v3 Cicer arietinum L. HOM05D006224 ORTHO05D007691 3.5e-134 482.3 281 80.4
TAR383G0021 Trochodendron aralioides HOM05D006224 ORTHO05D007691 8.6e-133 477.6 366 64.8
CANSAT56G1593 Cannabis sativa HOM05D006224 ORTHO05D007691 1.1e-132 477.2 329 69.6
Eucgr.E02819 Eucalyptus grandis HOM05D006224 ORTHO05D007691 2.5e-132 476.1 335 66.9
Actinidia07421 Actinidia chinensis HOM05D006224 ORTHO05D007691 3.3e-132 475.7 367 64.3
CANSAT56G0016 Cannabis sativa HOM05D006224 ORTHO05D007691 5.6e-132 474.9 329 69.3
Cfa003290 Carpinus fangiana HOM05D006224 ORTHO05D007691 5.6e-132 474.9 388 64.2
vmacro06195 Vaccinium macrocarpon HOM05D006224 ORTHO05D007691 4.7e-131 471.9 388 61.3
Ciclev10008608m.g Citrus clementina HOM05D006224 ORTHO05D007691 8.1e-131 471.1 368 65.2
Manes.16G071100 Manihot esculenta HOM05D006224 ORTHO05D007691 8.9e-130 467.6 369 64.8
MD15G1189600 Malus domestica HOM05D006224 ORTHO05D007691 1.2e-129 467.2 366 64.2
Atru.chr7.1298 Acer truncatum HOM05D006224 ORTHO05D007691 2.0e-129 466.5 362 64.9
Cc06_g09350 Coffea canephora HOM05D006224 ORTHO05D007691 2.0e-129 466.5 370 63.5
Thecc.09G114600 Theobroma cacao HOM05D006224 ORTHO05D007691 3.4e-129 465.7 374 63.9
GSVIVG01015431001 Vitis vinifera HOM05D006224 ORTHO05D007691 2.2e-128 463.0 366 64.2
Haze_25683 Corylus avellana HOM05D006224 ORTHO05D007691 6.4e-128 461.5 382 62.8
GSVIVG01015429001 Vitis vinifera HOM05D006224 ORTHO05D007691 8.4e-128 461.1 368 64.1
TPR.G31456 Trifolium pratense HOM05D006224 ORTHO05D007691 5.4e-127 458.4 327 69.4
CiPaw.03G235000 Carya illinoinensis HOM05D006224 ORTHO05D007691 1.2e-126 457.2 375 62.7
Gohir.A08G240600 Gossypium hirsutum HOM05D006224 ORTHO05D007691 2.1e-126 456.4 374 61.0
Gorai.004G279400 Gossypium raimondii HOM05D006224 ORTHO05D007691 2.1e-126 456.4 354 63.8
Gohir.D08G261300 Gossypium hirsutum HOM05D006224 ORTHO05D007691 4.6e-126 455.3 354 63.6
Cpa.g.sc23.139 Carica papaya HOM05D006224 ORTHO05D007691 1.7e-125 453.4 372 61.8
DCAR_010440 Daucus carota HOM05D006224 ORTHO05D007691 2.5e-124 449.5 326 64.7
HanXRQChr05g0138301 Helianthus annuus HOM05D006224 ORTHO05D007691 2.5e-124 449.5 366 62.6
Duzib187G0885 Durio zibethinus HOM05D006224 ORTHO05D007691 5.6e-124 448.4 351 65.2
Hund26119 Selenicereus undatus HOM05D006224 ORTHO05D007691 4.8e-123 445.3 376 60.4
Lsat_1_v5_gn_8_94740 Lactuca sativa HOM05D006224 ORTHO05D007691 8.1e-123 444.5 345 63.2
TWI34G0303 Tripterygium wilfordii HOM05D006224 ORTHO05D007691 1.1e-122 444.1 375 61.1
ClCG06G010400 Citrullus lanatus HOM05D006224 ORTHO05D007691 3.1e-122 442.6 376 60.4
Migut.K00473 Erythranthe guttata HOM05D006224 ORTHO05D007691 3.1e-122 442.6 343 62.7
FvH4_1g05360 Fragaria vesca HOM05D006224 ORTHO05D007691 4.0e-122 442.2 367 62.4
Rhsim03G0244800 Rhododendron simsii HOM05D006224 ORTHO05D007691 1.2e-121 440.7 416 55.8
TWI34G1467 Tripterygium wilfordii HOM05D006224 ORTHO05D007691 1.2e-121 440.7 377 59.9
Ciclev10008605m.g Citrus clementina HOM05D006224 ORTHO05D007691 3.4e-121 439.1 358 61.5
MELO3C025318.2 Cucumis melo HOM05D006224 ORTHO05D007691 3.4e-121 439.1 365 60.0
CDE04G0176 Ceratophyllum demersum HOM05D006224 ORTHO05D007691 5.8e-121 438.3 371 60.6
Nitab4.5_0013433g0030 Nicotiana tabacum HOM05D006224 ORTHO05D007691 5.8e-121 438.3 330 66.4
Sed0009228 Sechium edule HOM05D006224 ORTHO05D007691 7.6e-121 438.0 371 62.0
PGSC0003DMG400024204 Solanum tuberosum HOM05D006224 ORTHO05D007691 7.6e-121 438.0 331 64.4
FAN19G0264 Fragaria x ananassa HOM05D006224 ORTHO05D007691 1.7e-120 436.8 372 61.8
FAN23G1546 Fragaria x ananassa HOM05D006224 ORTHO05D007691 2.9e-120 436.0 364 61.8
Solyc07g009170.4 Solanum lycopersicum HOM05D006224 ORTHO05D007691 2.9e-120 436.0 347 62.2
PSO063G0773 Papaver somniferum HOM05D006224 ORTHO05D007691 4.9e-120 435.3 374 59.4
Sopen07g017160 Solanum pennellii HOM05D006224 ORTHO05D007691 4.9e-120 435.3 333 63.4
TPR.G31453 Trifolium pratense HOM05D006224 ORTHO05D007691 8.4e-120 434.5 355 63.9
RcHm_v2.0_Chr2g0091041 Rosa chinensis HOM05D006224 ORTHO05D007691 1.4e-119 433.7 361 61.8
PSO782G3139 Papaver somniferum HOM05D006224 ORTHO05D007691 3.2e-119 432.6 372 59.7
MBI06_g04550_MAGBIO Magnolia biondii HOM05D006224 ORTHO05D007691 4.2e-119 432.2 401 56.1
FAN26G2363 Fragaria x ananassa HOM05D006224 ORTHO05D007691 1.2e-118 430.6 366 61.7
ATR0037G051 Amborella trichopoda HOM05D006224 ORTHO05D007691 1.6e-118 430.3 337 61.1
Nitab4.5_0002361g0030 Nicotiana tabacum HOM05D006224 ORTHO05D007691 2.1e-118 429.9 376 60.4
PGR042G0994 Punica granatum HOM05D006224 ORTHO05D007691 2.1e-118 429.9 398 57.0
SalBow1G0968 Salvia bowleyana HOM05D006224 ORTHO05D007691 2.1e-118 429.9 387 56.6
Oeu060631.1 Olea europaea HOM05D006224 ORTHO05D007691 2.7e-118 429.5 345 62.3
ClCG00G002210 Citrullus lanatus HOM05D006224 ORTHO05D007691 7.9e-118 427.9 350 61.4
ClCG06G010410 Citrullus lanatus HOM05D006224 ORTHO05D007691 7.9e-118 427.9 350 61.4
Thhalv10013889m.g Eutrema salsugineum HOM05D006224 ORTHO05D007691 1.0e-117 427.6 374 60.7
BolC9t58538H Brassica oleracea HOM05D006224 ORTHO05D007691 2.3e-117 426.4 374 60.2
Aa31LG11G5060 Aethionema arabicum HOM05D006224 ORTHO05D007691 8.7e-117 424.5 354 60.5
ClCG00G002580 Citrullus lanatus HOM05D006224 ORTHO05D007691 8.7e-117 424.5 376 58.8
Aqoxy5G03788 Aquilegia oxysepala HOM05D006224 ORTHO05D007691 1.5e-116 423.7 363 59.2
HPP92_009101 Vanilla planifolia HOM05D006224 ORTHO05D007691 1.5e-116 423.7 334 60.8
CsaV3_1G030820 Cucumis sativus L. HOM05D006224 ORTHO05D007691 3.3e-116 422.5 366 59.6
Sc08g0007140 Simmondsia chinensis HOM05D006224 ORTHO05D007691 4.3e-116 422.2 360 60.3
Zm00001eb309830 Zea mays HOM05D006224 ORTHO05D007691 7.4e-116 421.4 346 60.7
CSS0033373 Camellia sinensis var. sinensis HOM05D006224 ORTHO05D007691 6.2e-115 418.3 386 58.0
AUR62011028 Chenopodium quinoa HOM05D006224 ORTHO05D007691 8.1e-115 417.9 391 57.0
Potri.006G157700 Populus trichocarpa HOM05D006224 ORTHO05D007691 8.1e-115 417.9 342 62.0
Carub.0006s1780 Capsella rubella HOM05D006224 ORTHO05D007691 1.4e-114 417.2 350 60.9
AT5G19460 Arabidopsis thaliana HOM05D006224 ORTHO05D007691 4.5e-113 412.1 377 57.6
ECA236G3755 Erigeron canadensis HOM05D006224 ORTHO05D007691 1.3e-112 410.6 280 70.7
Peaxi162Scf00560g00629 Petunia axillaris HOM05D006224 ORTHO05D007691 3.8e-112 409.1 375 57.6
Sp6g24950 Schrenkiella parvula HOM05D006224 ORTHO05D007691 6.4e-112 408.3 382 57.6
AL6G30950 Arabidopsis lyrata HOM05D006224 ORTHO05D007691 1.4e-111 407.1 373 58.2
THA.LOC104799742 Tarenaya hassleriana HOM05D006224 ORTHO05D007691 3.2e-111 406.0 282 68.4
FAN28G2414 Fragaria x ananassa HOM05D006224 ORTHO05D007691 2.7e-110 402.9 347 60.5
A10p20240 Brassica napus HOM05D006224 ORTHO05D007691 1.9e-108 396.7 354 59.3
SGA_v2.0_scaffold23G10152 Striga asiatica HOM05D006224 ORTHO05D007691 1.9e-108 396.7 331 60.1
CAN.G929.19 Capsicum annuum HOM05D006224 ORTHO05D007691 4.8e-107 392.1 276 67.8
EL10Ac8g18541 Beta vulgaris HOM05D006224 ORTHO05D007691 6.2e-107 391.7 378 55.3
Aqoxy5G03790 Aquilegia oxysepala HOM05D006224 ORTHO05D007691 8.1e-107 391.3 355 55.2
AT5G19470 Arabidopsis thaliana HOM05D006224 ORTHO05D007691 3.1e-106 389.4 370 56.2
AL6G30960 Arabidopsis lyrata HOM05D006224 ORTHO05D007691 6.9e-106 388.3 374 55.6
C09p56840 Brassica napus HOM05D006224 ORTHO05D007691 2.0e-105 386.7 374 57.0
FAN26G3318 Fragaria x ananassa HOM05D006224 ORTHO05D007691 4.5e-105 385.6 393 54.5
Sabra06G0124600 Salix brachista HOM05D006224 ORTHO05D007691 1.9e-100 370.2 334 58.4
Pp3c12_9090 Physcomitrium patens HOM05D006224 ORTHO05D007691 9.6e-100 367.9 298 59.1
BraA10t44095Z Brassica rapa HOM05D006224 ORTHO05D007691 3.2e-95 352.8 327 57.5
Nn8g39262 Nelumbo nucifera HOM05D006224 ORTHO05D007691 1.2e-94 350.9 366 51.4
Mapoly0084s0007 Marchantia polymorpha HOM05D006224 ORTHO05D007691 1.8e-93 347.1 305 55.1
Lj7A644T17 Lonicera japonica HOM05D006224 ORTHO05D007691 8.5e-88 328.2 373 49.3
SMO347G0504 Selaginella moellendorffii HOM05D006224 ORTHO05D007691 2.5e-87 326.6 294 54.1
Peaxi162Scf00560g00615 Petunia axillaris HOM05D006224 ORTHO05D007691 3.6e-86 322.8 322 53.1
Potri.006G157800 Populus trichocarpa HOM05D006224 ORTHO05D007691 1.1e-84 317.8 376 50.3
HanXRQChr05g0139161 Helianthus annuus HOM05D006224 ORTHO05D007691 1.7e-80 303.9 346 50.0
Cre13.g582201 Chlamydomonas reinhardtii HOM05D006224 ORTHO05D007691 1.6e-78 297.4 300 50.7
Prupe.7G186600 Prunus persica HOM05D006224 ORTHO05D007691 3.5e-73 279.6 256 56.2
AagrBONN_evm.TU.Sc2ySwM_228.2202 Anthoceros agrestis HOM05D006224 ORTHO05D007691 5.9e-73 278.9 214 61.7
unitig_748.g7154 Utricularia gibba HOM05D006224 ORTHO05D007691 8.0e-70 268.5 277 53.1
Pp3c6_16000 Physcomitrium patens HOM05D006224 ORTHO05D007691 1.8e-69 267.3 299 45.2
Pp3c3_27400 Physcomitrium patens HOM05D006224 ORTHO05D007691 8.5e-64 248.4 288 40.3
MCO11G748 Micromonas commoda HOM05D006224 ORTHO05D007691 7.5e-60 235.3 296 43.6
AUR62033400 Chenopodium quinoa HOM05D006224 ORTHO05D007691 5.4e-58 229.2 287 47.0
PRCOL_00004258 Prasinoderma coloniale HOM05D006224 ORTHO05D007691 2.1e-54 217.2 230 48.7
CARHR193460 Cardamine hirsuta HOM05D006224 ORTHO05D007691 2.5e-47 193.7 129 71.3
Os09g0322200 Oryza sativa ssp. japonica HOM05D006224 ORTHO05D007691 3.2e-34 150.2 151 52.3
Ah.09g227190 Amaranthus hybridus HOM05D006224 ORTHO05D007691 1.0e-32 145.2 90 72.2
unitig_748.g7155 Utricularia gibba HOM05D006224 ORTHO05D007691 3.0e-32 143.7 85 76.5
Cfa025487 Carpinus fangiana HOM05D006224 ORTHO05D007691 8.1e-30 135.6 196 38.8
SEGI_32758 Sequoiadendron giganteum HOM05D006224 ORTHO05D007691 1.7e-24 117.9 69 71.0
MSTRG.26438 Avicennia marina HOM05D006224 ORTHO05D007691 2.6e-12 77.4 108 46.3
SEGI_12041 Sequoiadendron giganteum HOM05D006224 ORTHO05D007691 3.8e-11 73.6 78 52.6
vmacro11393 Vaccinium macrocarpon HOM05D003441 ORTHO05D004516 2.4e-10 70.9 42 71.4


User provided reference genes

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