Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.NH5DW8 Arachis hypogaea HOM05D004786 ORTHO05D005582 3.8e-52 208.0 111 100.0
arahy.Tifrunner.gnm1.ann1.8ER521 Arachis hypogaea HOM05D004786 ORTHO05D005582 1.6e-50 202.6 111 97.3
arahy.Tifrunner.gnm1.ann1.BSR60Q Arachis hypogaea HOM05D004786 ORTHO05D005582 2.9e-44 181.8 136 77.2
arahy.Tifrunner.gnm1.ann1.QQF2XI Arachis hypogaea HOM05D004786 ORTHO05D005582 6.4e-44 180.6 136 76.5
arahy.Tifrunner.gnm1.ann1.7GX23T Arachis hypogaea HOM05D004786 ORTHO05D005582 2.4e-43 178.7 136 75.7
Phvul.007G215700 Phaseolus vulgaris HOM05D004786 ORTHO05D005582 3.5e-42 174.9 135 74.8
Glyma.10G001200 Glycine max HOM05D004786 ORTHO05D005582 3.0e-41 171.8 135 73.3
Glyma.10G014500 Glycine max HOM05D004786 ORTHO05D005582 3.0e-41 171.8 135 73.3
Lj5g0024614 Lotus japonicus HOM05D004786 ORTHO05D005582 4.3e-40 167.9 135 71.9
Ca_01909_v3 Cicer arietinum L. HOM05D004786 ORTHO05D005582 1.6e-39 166.0 135 69.6
arahy.Tifrunner.gnm1.ann1.U8589F Arachis hypogaea HOM05D004786 ORTHO05D005582 4.8e-39 164.5 131 71.8
Lalb_Chr11g0063261 Lupinus albus HOM05D004786 ORTHO05D005582 2.6e-37 158.7 132 71.2
MELO3C015937.2 Cucumis melo HOM05D004786 ORTHO05D005582 4.6e-34 147.9 136 63.2
TPR.G19757 Trifolium pratense HOM05D004786 ORTHO05D005582 7.9e-34 147.1 131 64.1
CiPaw.08G091100 Carya illinoinensis HOM05D004786 ORTHO05D005582 1.3e-33 146.4 124 66.9
CsaV3_7G029840 Cucumis sativus L. HOM05D004786 ORTHO05D005582 1.8e-33 146.0 136 62.5
Sed0001914 Sechium edule HOM05D004786 ORTHO05D005582 5.1e-33 144.4 135 62.2
ClCG09G005230 Citrullus lanatus HOM05D004786 ORTHO05D005582 8.7e-33 143.7 142 59.2
Ca_10295_v3 Cicer arietinum L. HOM05D004786 ORTHO05D005582 1.1e-32 143.3 135 62.2
Haze_05017 Corylus avellana HOM05D004786 ORTHO05D005582 1.1e-32 143.3 124 66.1
QL12p029078 Quercus lobata HOM05D004786 ORTHO05D005582 5.6e-32 141.0 124 66.1
vmacro02412 Vaccinium macrocarpon HOM05D004786 ORTHO05D005582 5.6e-32 141.0 127 63.8
QL02p082487 Quercus lobata HOM05D004786 ORTHO05D005582 7.4e-32 140.6 124 64.5
Prupe.2G036200 Prunus persica HOM05D004786 ORTHO05D005582 2.1e-31 139.0 124 64.5
Actinidia21008 Actinidia chinensis HOM05D004395 ORTHO05D005234 4.8e-31 137.9 126 64.3
RcHm_v2.0_Chr4g0410491 Rosa chinensis HOM05D004786 ORTHO05D005582 4.8e-31 137.9 123 65.0
CSS0028094 Camellia sinensis var. sinensis HOM05D004786 ORTHO05D005582 6.2e-31 137.5 127 61.4
FAN13G1587 Fragaria x ananassa HOM05D004786 ORTHO05D005582 8.1e-31 137.1 123 64.2
Psat6g162520 Pisum sativum HOM05D004786 ORTHO05D005582 8.1e-31 137.1 110 67.3
Thecc.04G020200 Theobroma cacao HOM05D004786 ORTHO05D005582 8.1e-31 137.1 124 64.5
Dinv27220 Davidia involucrata HOM05D004786 ORTHO05D005582 1.4e-30 136.3 127 61.4
Gohir.D10G086000 Gossypium hirsutum HOM05D004786 ORTHO05D005582 1.4e-30 136.3 124 63.7
Gorai.011G094200 Gossypium raimondii HOM05D004786 ORTHO05D005582 1.4e-30 136.3 124 63.7
arahy.Tifrunner.gnm1.ann1.17AZVE Arachis hypogaea HOM05D004786 ORTHO05D005582 1.8e-30 136.0 100 78.0
Hma1.2p1_0089F.1_g045460 Hydrangea macrophylla HOM05D004786 ORTHO05D005582 1.8e-30 136.0 119 64.7
FvH4_5g39500 Fragaria vesca HOM05D004786 ORTHO05D005582 2.4e-30 135.6 123 65.0
FAN18G2645 Fragaria x ananassa HOM05D004786 ORTHO05D005582 2.4e-30 135.6 123 65.0
Rhsim13G0006100 Rhododendron simsii HOM05D004786 ORTHO05D005582 3.1e-30 135.2 127 63.8
RcHm_v2.0_Chr7g0241821 Rosa chinensis HOM05D004786 ORTHO05D005582 4.0e-30 134.8 123 64.2
CANSAT01G0603 Cannabis sativa HOM05D004786 ORTHO05D005582 9.0e-30 133.7 122 63.1
HanXRQChr01g0000811 Helianthus annuus HOM05D004786 ORTHO05D005582 9.0e-30 133.7 123 62.6
Rhsim01G0289800 Rhododendron simsii HOM05D004786 ORTHO05D005582 9.0e-30 133.7 127 59.8
MSTRG.21673 Avicennia marina HOM05D004786 ORTHO05D005582 1.2e-29 133.3 128 63.3
COL.COLO4_29184 Corchorus olitorius HOM05D004786 ORTHO05D005582 1.2e-29 133.3 124 63.7
Manes.02G090900 Manihot esculenta HOM05D004786 ORTHO05D005582 1.2e-29 133.3 127 60.6
Nn4g25644 Nelumbo nucifera HOM05D004786 ORTHO05D005582 1.2e-29 133.3 126 62.7
CAN.G1164.25 Capsicum annuum HOM05D004786 ORTHO05D005582 1.5e-29 132.9 124 61.3
Ciclev10022845m.g Citrus clementina HOM05D004786 ORTHO05D005582 1.5e-29 132.9 128 62.5
Cc06_g14210 Coffea canephora HOM05D004786 ORTHO05D005582 2.6e-29 132.1 124 62.1
Gohir.A10G101800 Gossypium hirsutum HOM05D004786 ORTHO05D005582 3.4e-29 131.7 120 64.2
Medtr1g087370 Medicago truncatula HOM05D004786 ORTHO05D005582 3.4e-29 131.7 135 57.8
Atru.chr5.1041 Acer truncatum HOM05D004786 ORTHO05D005582 4.5e-29 131.3 128 61.7
Duzib147G1635 Durio zibethinus HOM05D004786 ORTHO05D005582 4.5e-29 131.3 124 62.9
TWI18G0747 Tripterygium wilfordii HOM05D004786 ORTHO05D005582 5.8e-29 131.0 127 59.8
Oeu047382.1 Olea europaea HOM05D004786 ORTHO05D005582 7.6e-29 130.6 127 59.1
Potri.014G122500 Populus trichocarpa HOM05D004786 ORTHO05D005582 7.6e-29 130.6 125 62.4
Solyc02g078300.3 Solanum lycopersicum HOM05D004786 ORTHO05D005582 7.6e-29 130.6 124 60.5
Sopen02g023150 Solanum pennellii HOM05D004786 ORTHO05D005582 7.6e-29 130.6 124 60.5
PGSC0003DMG400029688 Solanum tuberosum HOM05D004786 ORTHO05D005582 7.6e-29 130.6 124 60.5
Nitab4.5_0002158g0250 Nicotiana tabacum HOM05D004786 ORTHO05D005582 9.9e-29 130.2 124 61.3
Nitab4.5_0007940g0040 Nicotiana tabacum HOM05D004786 ORTHO05D005582 9.9e-29 130.2 124 61.3
CSS0001467 Camellia sinensis var. sinensis HOM05D004786 ORTHO05D005582 1.3e-28 129.8 127 59.8
CSS0006628 Camellia sinensis var. sinensis HOM05D004786 ORTHO05D005582 1.3e-28 129.8 127 59.8
Migut.D00095 Erythranthe guttata HOM05D004786 ORTHO05D005582 1.3e-28 129.8 127 58.3
Ciclev10002837m.g Citrus clementina HOM05D004786 ORTHO05D005582 1.7e-28 129.4 128 60.2
Sabra14G0090900 Salix brachista HOM05D004786 ORTHO05D005582 1.7e-28 129.4 125 63.2
Ah.11g049360 Amaranthus hybridus HOM05D004786 ORTHO05D005582 2.9e-28 128.6 128 59.4
Peaxi162Scf00736g00421 Petunia axillaris HOM05D004786 ORTHO05D005582 2.9e-28 128.6 124 60.5
TAR636G2395 Trochodendron aralioides HOM05D004786 ORTHO05D005582 3.8e-28 128.3 124 60.5
GSVIVG01028095001 Vitis vinifera HOM05D004786 ORTHO05D005582 3.8e-28 128.3 142 56.3
CDE02G4247 Ceratophyllum demersum HOM05D004786 ORTHO05D005582 4.9e-28 127.9 120 61.7
Gorai.001G266700 Gossypium raimondii HOM05D004786 ORTHO05D005582 4.9e-28 127.9 124 60.5
DCAR_002518 Daucus carota HOM05D004786 ORTHO05D005582 8.4e-28 127.1 127 59.1
vmacro15120 Vaccinium macrocarpon HOM05D004786 ORTHO05D005582 8.4e-28 127.1 127 58.3
Aqoxy5G00800 Aquilegia oxysepala HOM05D004786 ORTHO05D005582 1.1e-27 126.7 124 59.7
AUR62024675 Chenopodium quinoa HOM05D004786 ORTHO05D005582 1.1e-27 126.7 124 60.5
Cpa.g.sc18.18 Carica papaya HOM05D004786 ORTHO05D005582 1.4e-27 126.3 125 61.6
EL10As5g23505 Beta vulgaris HOM05D004786 ORTHO05D005582 1.9e-27 125.9 128 59.4
SGA_v2.0_scaffold376G50268 Striga asiatica HOM05D004786 ORTHO05D005582 1.9e-27 125.9 134 56.0
THA.LOC104801297 Tarenaya hassleriana HOM05D004786 ORTHO05D005582 1.9e-27 125.9 125 61.6
Eucgr.C00116 Eucalyptus grandis HOM05D004786 ORTHO05D005582 3.2e-27 125.2 118 61.9
CANSAT01G2201 Cannabis sativa HOM05D004786 ORTHO05D005582 4.2e-27 124.8 122 61.5
SEGI_16103 Sequoiadendron giganteum HOM05D004786 ORTHO05D005582 4.2e-27 124.8 124 55.6
Actinidia21415 Actinidia chinensis HOM05D004786 ORTHO05D005582 7.1e-27 124.0 131 59.5
ECA248G3582 Erigeron canadensis HOM05D004786 ORTHO05D005582 9.3e-27 123.6 124 60.5
Solyc02g078285.1 Solanum lycopersicum HOM05D004786 ORTHO05D005582 9.3e-27 123.6 124 58.1
PGR142G0252 Punica granatum HOM05D004786 ORTHO05D005582 2.1e-26 122.5 122 56.6
unitig_736.g22945 Utricularia gibba HOM05D004786 ORTHO05D005582 2.1e-26 122.5 139 56.1
Nn3g21644 Nelumbo nucifera HOM05D004786 ORTHO05D005582 4.6e-26 121.3 124 57.3
FAN14G2614 Fragaria x ananassa HOM05D004786 ORTHO05D005582 1.3e-25 119.8 105 62.9
PSO017G1185 Papaver somniferum HOM05D004786 ORTHO05D005582 2.3e-25 119.0 123 57.7
PSO478G0620 Papaver somniferum HOM05D004786 ORTHO05D005582 2.3e-25 119.0 123 57.7
Glyma.10G002500 Glycine max HOM05D004786 ORTHO05D005582 3.0e-25 118.6 104 67.3
PSO478G2484 Papaver somniferum HOM05D004786 ORTHO05D005582 5.1e-25 117.9 117 58.1
SalBow3G4092 Salvia bowleyana HOM05D004786 ORTHO05D005582 6.7e-25 117.5 120 61.7
Zm00001eb131310 Zea mays HOM05D004786 ORTHO05D005582 6.7e-25 117.5 105 62.9
Atru.chr2.1244 Acer truncatum HOM05D004786 ORTHO05D005582 1.5e-24 116.3 128 54.7
Os01g0338100 Oryza sativa ssp. japonica HOM05D004786 ORTHO05D005582 5.6e-24 114.4 105 61.0
Atru.chr2.1242 Acer truncatum HOM05D004786 ORTHO05D005582 7.4e-24 114.0 128 53.9
Atru.chr5.1040 Acer truncatum HOM05D004786 ORTHO05D005582 7.4e-24 114.0 128 54.7
PSO384G2419 Papaver somniferum HOM05D004786 ORTHO05D005582 1.3e-23 113.2 123 55.3
Sc05g0000530 Simmondsia chinensis HOM05D004786 ORTHO05D005582 2.1e-23 112.5 130 54.6
AUR62011833 Chenopodium quinoa HOM05D004786 ORTHO05D005582 2.8e-23 112.1 165 45.5
Hund02934 Selenicereus undatus HOM05D004786 ORTHO05D005582 3.7e-23 111.7 165 46.7
Aqoxy2G02794 Aquilegia oxysepala HOM05D004786 ORTHO05D005582 4.8e-23 111.3 117 53.8
PSO339G0583 Papaver somniferum HOM05D004786 ORTHO05D005582 6.2e-23 110.9 116 54.3
Oeu005869.1 Olea europaea HOM05D004786 ORTHO05D005582 2.4e-22 109.0 126 50.0
BcaC07g36997 Brassica carinata HOM05D004786 ORTHO05D005582 5.8e-21 104.4 120 51.7
A08p37600 Brassica napus HOM05D004786 ORTHO05D005582 5.8e-21 104.4 108 52.8
C08p00190 Brassica napus HOM05D004786 ORTHO05D005582 5.8e-21 104.4 120 51.7
BolC8t46821H Brassica oleracea HOM05D004786 ORTHO05D005582 5.8e-21 104.4 120 51.7
BraA08t35657Z Brassica rapa HOM05D004786 ORTHO05D005582 5.8e-21 104.4 108 52.8
CARHR001960 Cardamine hirsuta HOM05D004786 ORTHO05D005582 7.6e-21 104.0 126 52.4
C05p01350 Brassica napus HOM05D004786 ORTHO05D005582 1.0e-20 103.6 108 55.6
BolC5t28917H Brassica oleracea HOM05D004786 ORTHO05D005582 1.0e-20 103.6 108 55.6
Sp1g01660 Schrenkiella parvula HOM05D004786 ORTHO05D005582 1.3e-20 103.2 127 50.4
AT1G02680 Arabidopsis thaliana HOM05D004786 ORTHO05D005582 2.9e-20 102.1 105 57.1
Carub.0001s0173 Capsella rubella HOM05D004786 ORTHO05D005582 2.9e-20 102.1 118 53.4
Thhalv10009111m.g Eutrema salsugineum HOM05D004786 ORTHO05D005582 2.9e-20 102.1 127 49.6
A10p01370 Brassica napus HOM05D004786 ORTHO05D005582 4.9e-20 101.3 126 50.0
Aqoxy293s004 Aquilegia oxysepala HOM05D004786 ORTHO05D005582 6.5e-20 100.9 154 45.5
SHI21583 Sapria himalayana HOM05D004786 ORTHO05D005582 6.5e-20 100.9 112 52.7
BraA10t42413Z Brassica rapa HOM05D004786 ORTHO05D005582 8.4e-20 100.5 127 46.5
VMungo0720G3029 Vigna mungo HOM05D003159 ORTHO05D005582 1.1e-19 100.1 92 66.3
AL1G12010 Arabidopsis lyrata HOM05D004786 ORTHO05D005582 1.9e-19 99.4 125 50.4
AagrBONN_evm.TU.Sc2ySwM_344.2318 Anthoceros agrestis HOM05D004786 ORTHO05D005582 9.3e-19 97.1 126 46.8
Mapoly0033s0143 Marchantia polymorpha HOM05D004786 ORTHO05D005582 9.3e-19 97.1 107 50.5
TAR633G1250 Trochodendron aralioides HOM05D004786 ORTHO05D005582 2.7e-18 95.5 90 58.9
FvH4_6g14960 Fragaria vesca HOM05D004786 ORTHO05D005582 3.5e-18 95.1 87 60.9
Pp3c10_23650 Physcomitrium patens HOM05D004786 ORTHO05D005582 3.5e-18 95.1 111 46.8
DCAR_030468 Daucus carota HOM05D004786 ORTHO05D005582 4.6e-18 94.7 67 74.6
Pp3c20_20300 Physcomitrium patens HOM05D004786 ORTHO05D005582 1.3e-17 93.2 115 46.1
Gohir.A07G224200 Gossypium hirsutum HOM05D004786 ORTHO05D005582 1.8e-17 92.8 87 59.8
Mapoly0066s0092 Marchantia polymorpha HOM05D004786 ORTHO05D005582 1.8e-17 92.8 125 44.0
AagrBONN_evm.TU.Sc2ySwM_228.4423 Anthoceros agrestis HOM05D004786 ORTHO05D005582 2.3e-17 92.4 105 49.5
ATR0068G032 Amborella trichopoda HOM05D004786 ORTHO05D005582 3.0e-17 92.0 68 69.1
AagrBONN_evm.TU.Sc2ySwM_362.2238 Anthoceros agrestis HOM05D004786 ORTHO05D005582 3.9e-17 91.7 124 45.2
HPP92_025545 Vanilla planifolia HOM05D004786 ORTHO05D005582 3.9e-17 91.7 83 59.0
Aa31LG1G9890 Aethionema arabicum HOM05D004786 ORTHO05D005582 1.5e-16 89.7 157 41.4
CBR_g31434 Chara braunii HOM05D004977 ORTHO05D006454 1.3e-15 86.7 104 45.2
Lsat_1_v5_gn_3_69620 Lactuca sativa HOM05D004786 ORTHO05D005582 1.6e-15 86.3 124 49.2
SMO172G0161 Selaginella moellendorffii HOM05D004786 ORTHO05D005582 1.8e-14 82.8 107 47.7
Actinidia12745 Actinidia chinensis HOM05D004786 ORTHO05D005582 1.3e-12 76.6 80 57.5
HPP92_025439 Vanilla planifolia HOM05D004786 ORTHO05D005582 1.9e-11 72.8 38 81.6
BcaB03g15799 Brassica carinata HOM05D004786 ORTHO05D005582 3.2e-11 72.0 67 59.7
MD02G1287200 Malus domestica HOM05D004786 ORTHO05D005582 1.2e-10 70.1 47 72.3
Gohir.D07G231500 Gossypium hirsutum HOM05D004786 ORTHO05D005582 6.1e-10 67.8 50 66.0
HanXRQChr04g0094601 Helianthus annuus HOM05D004786 ORTHO05D005582 1.8e-09 66.2 78 52.6
MCO05G258 Micromonas commoda HOM05D004786 ORTHO05D005582 3.9e-09 65.1 105 37.1
Haze_27741 Corylus avellana HOM05D004786 ORTHO05D005582 5.7e-08 61.2 88 39.8
MD02G1287100 Malus domestica HOM05D004786 ORTHO05D005582 2.2e-07 59.3 69 53.6
PGSC0003DMG400028899 Solanum tuberosum HOM05D000457 ORTHO05D000560 2.2e-07 59.3 82 43.9
PRCOL_00006976 Prasinoderma coloniale HOM05D004786 ORTHO05D005582 4.8e-07 58.2 114 32.5
SGA_v2.0_scaffold334G49058 Striga asiatica HOM05D004395 ORTHO05D005234 1.4e-06 56.6 48 64.6
BcaB03g13505 Brassica carinata HOM05D004786 ORTHO05D005582 5.3e-06 54.7 76 46.1


User provided reference genes

Program Settings