Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.N6SBJA Arachis hypogaea HOM05D003851 ORTHO05D005657 2.2e-202 708.8 364 100.0
arahy.Tifrunner.gnm1.ann1.GYNY95 Arachis hypogaea HOM05D003851 ORTHO05D005657 1.4e-135 486.9 341 78.3
arahy.Tifrunner.gnm1.ann1.QBU7FE Arachis hypogaea HOM05D003851 ORTHO05D005657 1.7e-125 453.4 341 74.8
Medtr1g108690 Medicago truncatula HOM05D003851 ORTHO05D005657 3.8e-109 399.1 369 63.4
Phvul.007G035300 Phaseolus vulgaris HOM05D003851 ORTHO05D005657 6.0e-107 391.7 345 66.4
VMungo0720G3117 Vigna mungo HOM05D003851 ORTHO05D005657 1.1e-103 380.9 346 65.6
Glyma.20G124000 Glycine max HOM05D003851 ORTHO05D005657 1.6e-99 367.1 348 64.4
Lj5g0011385 Lotus japonicus HOM05D003851 ORTHO05D005657 6.0e-99 365.2 384 58.6
Lalb_Chr21g0308571 Lupinus albus HOM05D003851 ORTHO05D005657 6.0e-99 365.2 366 60.1
QL01p002786 Quercus lobata HOM05D003851 ORTHO05D005657 1.1e-97 360.9 365 60.3
Lalb_Chr17g0338751 Lupinus albus HOM05D003851 ORTHO05D005657 1.8e-95 353.6 349 62.5
Prupe.1G321000 Prunus persica HOM05D003851 ORTHO05D005657 2.0e-94 350.1 383 56.1
CiPaw.06G014300 Carya illinoinensis HOM05D003851 ORTHO05D005657 1.0e-93 347.8 367 58.0
CiPaw.05G246300 Carya illinoinensis HOM05D003851 ORTHO05D005657 4.9e-93 345.5 370 58.6
Glyma.10G266600 Glycine max HOM05D003851 ORTHO05D005657 8.4e-93 344.7 349 61.6
Thecc.02G217200 Theobroma cacao HOM05D003851 ORTHO05D005657 1.6e-91 340.5 366 58.2
Potri.008G126900 Populus trichocarpa HOM05D003851 ORTHO05D005657 1.3e-90 337.4 369 57.5
Hma1.2p1_0114F.1_g055400 Hydrangea macrophylla HOM05D003851 ORTHO05D005657 2.3e-90 336.7 354 59.9
MD16G1033300 Malus domestica HOM05D003851 ORTHO05D005657 3.9e-90 335.9 383 54.8
Ca_23695_v3 Cicer arietinum L. HOM05D003851 ORTHO05D005657 4.3e-89 332.4 366 57.4
Gorai.005G192900 Gossypium raimondii HOM05D003851 ORTHO05D005657 2.8e-88 329.7 376 54.8
Gohir.D02G171500 Gossypium hirsutum HOM05D003851 ORTHO05D005657 1.8e-87 327.0 365 55.1
MD13G1031100 Malus domestica HOM05D003851 ORTHO05D005657 4.0e-87 325.9 392 53.1
Dinv16173 Davidia involucrata HOM05D003851 ORTHO05D005657 6.9e-87 325.1 330 60.9
Atru.chr11.357 Acer truncatum HOM05D003851 ORTHO05D005657 2.0e-86 323.6 374 55.9
Sabra08G0095800 Salix brachista HOM05D003851 ORTHO05D005657 2.0e-86 323.6 390 54.4
Eucgr.B02881 Eucalyptus grandis HOM05D003851 ORTHO05D005657 2.6e-86 323.2 368 54.1
CSS0002048 Camellia sinensis var. sinensis HOM05D003851 ORTHO05D005657 4.5e-86 322.4 374 55.6
MSTRG.2194 Avicennia marina HOM05D003851 ORTHO05D005657 5.8e-86 322.0 370 55.4
CSS0020493 Camellia sinensis var. sinensis HOM05D003851 ORTHO05D005657 1.3e-85 320.9 350 57.7
Gohir.A03G148400 Gossypium hirsutum HOM05D003851 ORTHO05D005657 6.5e-85 318.5 365 54.2
TAR622G1410 Trochodendron aralioides HOM05D003851 ORTHO05D005657 1.1e-84 317.8 371 53.4
TPR.G4868 Trifolium pratense HOM05D003851 ORTHO05D005657 1.4e-84 317.4 369 55.0
Cfa015793 Carpinus fangiana HOM05D003851 ORTHO05D005657 2.7e-83 313.2 366 55.7
Nitab4.5_0001648g0010 Nicotiana tabacum HOM05D003851 ORTHO05D005657 7.9e-83 311.6 375 53.1
Ciclev10014287m.g Citrus clementina HOM05D003851 ORTHO05D005657 1.3e-82 310.8 388 52.3
Actinidia14940 Actinidia chinensis HOM05D003851 ORTHO05D005657 2.3e-82 310.1 402 50.7
Duzib268G1062 Durio zibethinus HOM05D003851 ORTHO05D005657 3.9e-82 309.3 366 53.8
Cpa.g.sc65.100 Carica papaya HOM05D003851 ORTHO05D005657 1.9e-81 307.0 371 52.8
Haze_00700 Corylus avellana HOM05D003851 ORTHO05D005657 1.3e-80 304.3 365 54.8
SGA_v2.0_scaffold376G50293 Striga asiatica HOM05D003851 ORTHO05D005657 1.3e-80 304.3 378 52.6
COL.COLO4_10968 Corchorus olitorius HOM05D003851 ORTHO05D005657 1.4e-79 300.8 372 52.2
Nitab4.5_0010188g0010 Nicotiana tabacum HOM05D003851 ORTHO05D005657 1.8e-79 300.4 374 51.1
Peaxi162Scf00119g01313 Petunia axillaris HOM05D003851 ORTHO05D005657 4.1e-79 299.3 382 50.5
Potri.010G116400 Populus trichocarpa HOM05D003851 ORTHO05D005657 2.6e-78 296.6 373 52.0
SalBow8G1489 Salvia bowleyana HOM05D003851 ORTHO05D005657 1.0e-77 294.7 393 50.1
CsaV3_5G028640 Cucumis sativus L. HOM05D003851 ORTHO05D005657 1.9e-76 290.4 382 50.0
SalBow8G4927 Salvia bowleyana HOM05D003851 ORTHO05D005657 3.2e-76 289.7 385 50.1
Rhsim09G0101400 Rhododendron simsii HOM05D003851 ORTHO05D005657 4.2e-76 289.3 378 52.1
Manes.06G062600 Manihot esculenta HOM05D003851 ORTHO05D005657 5.5e-76 288.9 373 51.2
Migut.E00398 Erythranthe guttata HOM05D003851 ORTHO05D005657 7.2e-76 288.5 372 52.4
Lalb_Chr02g0145581 Lupinus albus HOM05D003851 ORTHO05D005657 3.6e-75 286.2 304 57.9
FAN17G0190 Fragaria x ananassa HOM05D003851 ORTHO05D005657 4.6e-75 285.8 375 52.0
FAN07G1894 Fragaria x ananassa HOM05D003851 ORTHO05D005657 7.9e-75 285.0 375 51.7
MSTRG.878 Avicennia marina HOM05D003851 ORTHO05D005657 1.4e-74 284.3 367 50.4
Nn4g24048 Nelumbo nucifera HOM05D003851 ORTHO05D005657 1.8e-74 283.9 372 50.8
PGSC0003DMG400030558 Solanum tuberosum HOM05D003851 ORTHO05D005657 3.9e-74 282.7 378 49.2
CANSAT01G1493 Cannabis sativa HOM05D003851 ORTHO05D005657 5.1e-74 282.3 373 50.9
Actinidia36692 Actinidia chinensis HOM05D003851 ORTHO05D005657 1.5e-73 280.8 372 51.1
PGR102G1971 Punica granatum HOM05D003851 ORTHO05D005657 2.0e-73 280.4 368 51.6
FvH4_4g26260 Fragaria vesca HOM05D003851 ORTHO05D005657 2.5e-73 280.0 375 51.5
FAN12G1256 Fragaria x ananassa HOM05D003851 ORTHO05D005657 2.5e-73 280.0 375 51.5
FAN12G3131 Fragaria x ananassa HOM05D003851 ORTHO05D005657 2.5e-73 280.0 375 51.5
MELO3C005328.2 Cucumis melo HOM05D003851 ORTHO05D005657 4.3e-73 279.3 381 48.6
Aqoxy3G00152 Aquilegia oxysepala HOM05D003851 ORTHO05D005657 9.7e-73 278.1 384 49.0
PSO017G5384 Papaver somniferum HOM05D003851 ORTHO05D005657 1.3e-72 277.7 385 50.1
TWI31G1382 Tripterygium wilfordii HOM05D003851 ORTHO05D005657 2.2e-72 276.9 385 49.6
ClCG01G006040 Citrullus lanatus HOM05D003851 ORTHO05D005657 4.8e-72 275.8 377 49.3
Sed0026980 Sechium edule HOM05D003851 ORTHO05D005657 4.8e-72 275.8 384 49.2
Manes.14G136300 Manihot esculenta HOM05D003851 ORTHO05D005657 6.3e-72 275.4 371 50.1
PSO478G0832 Papaver somniferum HOM05D003851 ORTHO05D005657 6.3e-72 275.4 385 49.6
TAR629G0727 Trochodendron aralioides HOM05D003851 ORTHO05D005657 1.1e-71 274.6 372 50.8
vmacro10621 Vaccinium macrocarpon HOM05D003851 ORTHO05D005657 1.1e-71 274.6 383 50.4
GSVIVG01011794001 Vitis vinifera HOM05D003851 ORTHO05D005657 1.1e-71 274.6 363 51.0
THA.LOC104805047 Tarenaya hassleriana HOM05D003851 ORTHO05D005657 1.8e-71 273.9 366 50.5
TAR629G0282 Trochodendron aralioides HOM05D003851 ORTHO05D005657 2.4e-71 273.5 372 50.5
Aa31LG1G30 Aethionema arabicum HOM05D003851 ORTHO05D005657 9.1e-71 271.6 372 50.5
Nitab4.5_0000350g0210 Nicotiana tabacum HOM05D003851 ORTHO05D005657 1.5e-70 270.8 386 48.4
Hund25010 Selenicereus undatus HOM05D003851 ORTHO05D005657 2.0e-70 270.4 467 42.0
DCAR_023618 Daucus carota HOM05D003851 ORTHO05D005657 3.4e-70 269.6 407 46.7
HanXRQChr12g0377711 Helianthus annuus HOM05D003851 ORTHO05D005657 4.5e-70 269.2 385 49.4
Lj3A876T45 Lonicera japonica HOM05D003851 ORTHO05D005657 5.0e-69 265.8 396 46.5
Sopen04g002640 Solanum pennellii HOM05D003851 ORTHO05D005657 2.5e-68 263.5 399 45.6
Nitab4.5_0004524g0020 Nicotiana tabacum HOM05D003851 ORTHO05D005657 7.2e-68 261.9 385 47.0
Oeu062877.3 Olea europaea HOM05D003851 ORTHO05D005657 2.7e-67 260.0 392 45.4
Ah.16g102720 Amaranthus hybridus HOM05D003851 ORTHO05D005657 3.6e-67 259.6 401 46.4
RcHm_v2.0_Chr4g0433861 Rosa chinensis HOM05D003851 ORTHO05D005657 6.1e-67 258.8 294 54.8
Solyc04g007560.3 Solanum lycopersicum HOM05D003851 ORTHO05D005657 7.9e-67 258.5 414 44.4
ECA234G0471 Erigeron canadensis HOM05D003851 ORTHO05D005657 5.1e-66 255.8 382 46.9
Thhalv10006787m.g Eutrema salsugineum HOM05D003851 ORTHO05D005657 8.8e-66 255.0 365 49.6
THA.LOC104824160 Tarenaya hassleriana HOM05D003851 ORTHO05D005657 1.3e-64 251.1 363 47.7
Cc11_g09150 Coffea canephora HOM05D003851 ORTHO05D005657 6.3e-64 248.8 375 47.5
SGA_v2.0_scaffold170G38822 Striga asiatica HOM05D003851 ORTHO05D005657 1.1e-63 248.1 360 48.6
ATR0602G154 Amborella trichopoda HOM05D003851 ORTHO05D005657 1.8e-63 247.3 364 47.8
CAN.G1489.5 Capsicum annuum HOM05D003851 ORTHO05D005657 7.0e-63 245.4 377 45.1
MBI06_g17215_MAGBIO Magnolia biondii HOM05D003851 ORTHO05D005657 7.7e-62 241.9 385 47.3
AUR62039549 Chenopodium quinoa HOM05D003851 ORTHO05D005657 3.8e-61 239.6 404 43.8
Sp1g13470 Schrenkiella parvula HOM05D003851 ORTHO05D005657 5.0e-61 239.2 336 48.8
EL10Ac6g14256 Beta vulgaris HOM05D003851 ORTHO05D005657 6.5e-61 238.8 402 43.8
Sopen05g004260 Solanum pennellii HOM05D003851 ORTHO05D005657 6.5e-61 238.8 377 44.8
CAN.G822.7 Capsicum annuum HOM05D003851 ORTHO05D005657 5.5e-60 235.7 353 47.0
A06p11140 Brassica napus HOM05D003851 ORTHO05D005657 2.7e-59 233.4 367 45.2
HanXRQChr17g0567071 Helianthus annuus HOM05D003851 ORTHO05D005657 5.2e-58 229.2 412 43.4
Carub.0001s1490 Capsella rubella HOM05D003851 ORTHO05D005657 8.8e-58 228.4 315 48.6
BcaC05g25444 Brassica carinata HOM05D003851 ORTHO05D005657 1.5e-57 227.6 284 50.4
AL1G27200 Arabidopsis lyrata HOM05D003851 ORTHO05D005657 2.6e-57 226.9 288 51.4
C05p13260 Brassica napus HOM05D003851 ORTHO05D005657 4.4e-57 226.1 270 51.1
BolC5t30063H Brassica oleracea HOM05D003851 ORTHO05D005657 4.4e-57 226.1 270 51.1
AT1G15130 Arabidopsis thaliana HOM05D003851 ORTHO05D005657 7.4e-57 225.3 368 45.4
BcaB02g06581 Brassica carinata HOM05D003851 ORTHO05D005657 2.8e-56 223.4 336 46.1
Zm00001eb044760 Zea mays HOM05D003851 ORTHO05D005657 1.2e-54 218.0 370 43.0
BcaB03g14554 Brassica carinata HOM05D003851 ORTHO05D005657 1.6e-54 217.6 368 43.8
CDE04G3131 Ceratophyllum demersum HOM05D003851 ORTHO05D005657 5.9e-54 215.7 374 43.0
AUR62014128 Chenopodium quinoa HOM05D003851 ORTHO05D005657 7.7e-54 215.3 404 41.8
CARHR015650 Cardamine hirsuta HOM05D003851 ORTHO05D005657 1.3e-53 214.5 364 43.4
ECA233G2027 Erigeron canadensis HOM05D003851 ORTHO05D005657 3.8e-53 213.0 366 43.4
Peaxi162Scf00205g00924 Petunia axillaris HOM05D003851 ORTHO05D005657 6.5e-53 212.2 386 42.2
C08p45140 Brassica napus HOM05D003851 ORTHO05D005657 8.5e-53 211.8 373 43.7
A09p61550 Brassica napus HOM05D003851 ORTHO05D005657 1.1e-52 211.5 368 43.5
Actinidia15239 Actinidia chinensis HOM05D003851 ORTHO05D005657 1.5e-52 211.1 331 47.4
BcaNung05516 Brassica carinata HOM05D003851 ORTHO05D005657 2.5e-52 210.3 373 43.4
BolC8t52062H Brassica oleracea HOM05D003851 ORTHO05D005657 2.5e-52 210.3 373 43.4
BraA09t41528Z Brassica rapa HOM05D003851 ORTHO05D005657 2.5e-52 210.3 368 43.2
HPP92_013139 Vanilla planifolia HOM05D003851 ORTHO05D005657 4.2e-52 209.5 376 40.7
Lsat_1_v5_gn_4_15461 Lactuca sativa HOM05D003851 ORTHO05D005657 5.5e-52 209.1 381 42.0
BraA06t24294Z Brassica rapa HOM05D003851 ORTHO05D005657 7.2e-52 208.8 379 42.2
Solyc05g008430.4 Solanum lycopersicum HOM05D003851 ORTHO05D005657 3.6e-51 206.5 387 41.3
Mapoly0004s0114 Marchantia polymorpha HOM05D003851 ORTHO05D005657 4.0e-50 203.0 394 40.1
SEGI_09716 Sequoiadendron giganteum HOM05D003851 ORTHO05D005657 3.4e-49 199.9 348 42.5
CDE08G0110 Ceratophyllum demersum HOM05D003851 ORTHO05D005657 5.7e-49 199.1 336 44.0
Os10g0495300 Oryza sativa ssp. japonica HOM05D003851 ORTHO05D005657 1.8e-47 194.1 393 39.9
unitig_699.g19528 Utricularia gibba HOM05D003851 ORTHO05D005657 1.6e-46 191.0 191 58.1
Pp3c24_13730 Physcomitrium patens HOM05D003851 ORTHO05D005657 1.0e-45 188.3 357 38.7
Lsat_1_v5_gn_8_41561 Lactuca sativa HOM05D003851 ORTHO05D005657 8.5e-45 185.3 227 48.9
Zm00001eb221160 Zea mays HOM05D003851 ORTHO05D005657 1.6e-43 181.0 365 38.9
Pp3c8_14930 Physcomitrium patens HOM05D003851 ORTHO05D005657 3.1e-39 166.8 343 36.4
AagrBONN_evm.TU.Sc2ySwM_340.388 Anthoceros agrestis HOM05D003851 ORTHO05D005657 1.2e-38 164.9 385 36.1
CDE04G2900 Ceratophyllum demersum HOM05D003851 ORTHO05D130495 3.5e-38 163.3 338 39.3
SMO141G0055 Selaginella moellendorffii HOM05D003851 ORTHO05D005657 1.3e-37 161.4 339 36.3
arahy.Tifrunner.gnm1.ann1.EH4N64 Arachis hypogaea HOM05D058176 ORTHO05D084965 1.5e-36 157.9 82 98.8
arahy.Tifrunner.gnm1.ann1.VWEF5F Arachis hypogaea HOM05D003851 ORTHO05D000217 1.5e-36 157.9 82 92.7
arahy.Tifrunner.gnm1.ann1.1QFN2H Arachis hypogaea HOM05D000832 ORTHO05D000905 1.2e-35 154.8 87 94.3
arahy.Tifrunner.gnm1.ann1.567Z0C Arachis hypogaea HOM05D058176 ORTHO05D082640 8.0e-35 152.1 82 97.6
ECA233G2539 Erigeron canadensis HOM05D000004 ORTHO05D000002 1.2e-30 138.3 159 51.6
QL01p041527 Quercus lobata HOM05D000176 ORTHO05D000106 1.7e-29 134.4 86 81.4
Psat6g222920 Pisum sativum HOM05D003851 ORTHO05D005657 2.9e-29 133.7 154 53.9
Sc11g0003990 Simmondsia chinensis HOM05D003851 ORTHO05D005657 2.1e-27 127.5 154 50.6
HanXRQChr02g0041951 Helianthus annuus HOM05D003851 ORTHO05D023759 1.5e-25 121.3 140 53.6
Oeu064205.1 Olea europaea HOM05D003851 ORTHO05D005657 2.2e-24 117.5 91 70.3
EL10Ac4g09588 Beta vulgaris HOM05D003851 ORTHO05D005657 2.9e-24 117.1 183 45.4
Dinv04890 Davidia involucrata HOM05D003851 ORTHO05D005657 6.8e-18 95.9 93 63.4
CDE07G0047 Ceratophyllum demersum HOM05D003851 ORTHO05D130129 2.0e-17 94.4 121 45.5
Hma1.2p1_2029F.1_g311720 Hydrangea macrophylla HOM05D003851 ORTHO05D228069 5.8e-17 92.8 55 87.3
QL03p031079 Quercus lobata HOM05D003851 ORTHO05D004072 4.9e-16 89.7 58 79.3
QL03p031464 Quercus lobata HOM05D003851 ORTHO05D004072 4.9e-16 89.7 58 79.3
CBR_g20272 Chara braunii HOM05D003851 ORTHO05D005657 6.4e-16 89.4 301 29.6
arahy.Tifrunner.gnm1.ann1.BS651N Arachis hypogaea HOM05D002446 ORTHO05D023759 2.3e-10 70.9 35 97.1
ECA234G1408 Erigeron canadensis HOM05D003851 ORTHO05D005657 3.1e-10 70.5 91 44.0
FAN07G0165 Fragaria x ananassa HOM05D003851 ORTHO05D023759 5.8e-09 66.2 45 73.3


User provided reference genes

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