Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.N2H6V0 Arachis hypogaea HOM05D006324 ORTHO05D007463 2.3e-224 781.9 399 100.0
arahy.Tifrunner.gnm1.ann1.Q955DD Arachis hypogaea HOM05D006324 ORTHO05D007463 1.8e-117 426.8 211 99.5
Lalb_Chr01g0000431 Lupinus albus HOM05D006324 ORTHO05D007463 2.1e-76 290.4 232 66.4
VMungo0464G1625 Vigna mungo HOM05D006324 ORTHO05D007463 2.1e-76 290.4 237 65.4
Lj3g0003899 Lotus japonicus HOM05D006324 ORTHO05D007463 2.6e-71 273.5 236 62.7
Phvul.004G011500 Phaseolus vulgaris HOM05D006324 ORTHO05D007463 3.2e-69 266.5 231 62.3
Glyma.09G227600 Glycine max HOM05D006324 ORTHO05D007463 4.2e-69 266.2 228 63.2
Glyma.12G009100 Glycine max HOM05D006324 ORTHO05D007463 4.2e-69 266.2 228 63.2
FAN06G0074 Fragaria x ananassa HOM05D006324 ORTHO05D007463 2.4e-64 250.4 212 62.7
Ca_14667_v3 Cicer arietinum L. HOM05D006324 ORTHO05D007463 4.0e-64 249.6 229 61.1
QL04p008819 Quercus lobata HOM05D006324 ORTHO05D007463 7.6e-63 245.4 234 59.4
Medtr0085s0010 Medicago truncatula HOM05D006324 ORTHO05D007463 2.2e-62 243.8 229 60.7
CsaV3_7G030870 Cucumis sativus L. HOM05D006324 ORTHO05D007463 3.8e-62 243.0 233 55.8
Dinv09327 Davidia involucrata HOM05D006324 ORTHO05D007463 4.9e-62 242.7 232 56.0
GSVIVG01032154001 Vitis vinifera HOM05D006324 ORTHO05D007463 6.5e-62 242.3 232 58.2
CANSAT80G0022 Cannabis sativa HOM05D006324 ORTHO05D007463 3.2e-61 240.0 230 55.2
MELO3C023574.2 Cucumis melo HOM05D000009 ORTHO05D007463 5.5e-61 239.2 230 56.5
Eucgr.G03365 Eucalyptus grandis HOM05D006324 ORTHO05D007463 1.6e-60 237.7 231 57.1
TWI74G1214 Tripterygium wilfordii HOM05D006324 ORTHO05D007463 1.6e-60 237.7 232 55.6
Sabra16G0162000 Salix brachista HOM05D006324 ORTHO05D007463 2.1e-60 237.3 228 56.1
Potri.001G263800 Populus trichocarpa HOM05D006324 ORTHO05D007463 2.7e-60 236.9 228 56.6
Lj3g0011240 Lotus japonicus HOM05D006324 ORTHO05D007463 3.5e-60 236.5 192 65.6
FvH4_7g01340 Fragaria vesca HOM05D006324 ORTHO05D007463 4.6e-60 236.1 229 57.2
Sed0027296 Sechium edule HOM05D006324 ORTHO05D007463 7.9e-60 235.3 231 54.5
Thecc.09G178400 Theobroma cacao HOM05D006324 ORTHO05D007463 1.0e-59 235.0 231 55.8
Gorai.008G105500 Gossypium raimondii HOM05D006324 ORTHO05D007463 2.3e-59 233.8 228 54.4
RcHm_v2.0_Chr1g0317051 Rosa chinensis HOM05D006324 ORTHO05D007463 2.3e-59 233.8 229 57.6
Prupe.2G019000 Prunus persica HOM05D006324 ORTHO05D007463 5.1e-59 232.6 229 56.3
Prupe.2G017700 Prunus persica HOM05D006324 ORTHO05D007463 6.7e-59 232.3 228 57.0
Gohir.D12G097000 Gossypium hirsutum HOM05D006324 ORTHO05D007463 1.5e-58 231.1 228 53.9
MD02G1307800 Malus domestica HOM05D006324 ORTHO05D007463 1.9e-58 230.7 229 55.0
CiPaw.13G007100 Carya illinoinensis HOM05D006324 ORTHO05D007463 3.3e-58 229.9 232 55.2
Haze_03172 Corylus avellana HOM05D006324 ORTHO05D007463 4.3e-58 229.6 264 50.8
Gohir.A12G094300 Gossypium hirsutum HOM05D006324 ORTHO05D007463 7.4e-58 228.8 227 54.2
Duzib133G0472 Durio zibethinus HOM05D006324 ORTHO05D007463 9.6e-58 228.4 228 54.8
MSTRG.17017 Avicennia marina HOM05D006324 ORTHO05D007463 1.3e-57 228.0 231 52.8
CAN.G219.51 Capsicum annuum HOM05D006324 ORTHO05D007463 1.3e-57 228.0 249 50.6
Peaxi162Scf00019g00017 Petunia axillaris HOM05D006324 ORTHO05D007463 1.3e-57 228.0 232 53.0
CSS0038258 Camellia sinensis var. sinensis HOM05D006324 ORTHO05D007463 1.6e-57 227.6 215 55.3
FAN01G1980 Fragaria x ananassa HOM05D006324 ORTHO05D007463 1.6e-57 227.6 252 52.0
Solyc01g087550.3 Solanum lycopersicum HOM05D006324 ORTHO05D007463 3.7e-57 226.5 230 53.0
Dinv43416 Davidia involucrata HOM05D006324 ORTHO05D007463 4.8e-57 226.1 185 62.2
FAN03G2871 Fragaria x ananassa HOM05D006324 ORTHO05D007463 4.8e-57 226.1 229 56.3
PGR031G0767 Punica granatum HOM05D006324 ORTHO05D007463 4.8e-57 226.1 230 55.2
Sopen01g034520 Solanum pennellii HOM05D006324 ORTHO05D007463 6.3e-57 225.7 230 53.0
Oeu049007.1 Olea europaea HOM05D006324 ORTHO05D007463 8.2e-57 225.3 232 53.0
SalBow6G4289 Salvia bowleyana HOM05D006324 ORTHO05D007463 8.2e-57 225.3 228 53.9
Ah.10g038740 Amaranthus hybridus HOM05D006324 ORTHO05D007463 1.1e-56 224.9 229 55.0
Peaxi162Scf00071g01141 Petunia axillaris HOM05D006324 ORTHO05D007463 1.1e-56 224.9 216 56.0
Hund18591 Selenicereus undatus HOM05D006324 ORTHO05D007463 1.8e-56 224.2 227 53.3
HanXRQChr12g0357631 Helianthus annuus HOM05D006324 ORTHO05D007463 5.3e-56 222.6 225 52.9
ECA248G0404 Erigeron canadensis HOM05D000636 ORTHO05D002338 1.5e-55 221.1 222 53.2
AT5G09680 Arabidopsis thaliana HOM05D006324 ORTHO05D007463 7.6e-55 218.8 235 51.5
Cc02_g28340 Coffea canephora HOM05D006324 ORTHO05D007463 3.8e-54 216.5 229 49.3
Aqoxy5G04067 Aquilegia oxysepala HOM05D006324 ORTHO05D007463 6.5e-54 215.7 251 49.4
Carub.0004s0655 Capsella rubella HOM05D006324 ORTHO05D007463 3.2e-53 213.4 231 51.5
Cpa.g.sc12.280 Carica papaya HOM05D006324 ORTHO05D007463 5.5e-53 212.6 203 55.7
Sc16g0002910 Simmondsia chinensis HOM05D006324 ORTHO05D007463 5.5e-53 212.6 228 51.3
Lj9C638G12 Lonicera japonica HOM05D006324 ORTHO05D007463 7.2e-53 212.2 275 42.9
TAR633G2637 Trochodendron aralioides HOM05D006324 ORTHO05D007463 7.2e-53 212.2 189 58.7
AL6G20110 Arabidopsis lyrata HOM05D006324 ORTHO05D007463 1.6e-52 211.1 224 53.6
MD07G1017800 Malus domestica HOM05D006324 ORTHO05D007463 2.1e-52 210.7 226 52.7
Hma1.2p1_1328F.1_g275960 Hydrangea macrophylla HOM05D006324 ORTHO05D007463 3.5e-52 209.9 259 48.6
Rhsim07G0057200 Rhododendron simsii HOM05D006324 ORTHO05D007463 1.8e-51 207.6 214 54.7
TWI53G0677 Tripterygium wilfordii HOM05D006324 ORTHO05D007463 1.8e-51 207.6 231 50.6
Carub.0008s1534 Capsella rubella HOM05D006324 ORTHO05D007463 5.1e-51 206.1 231 51.1
Migut.N01783 Erythranthe guttata HOM05D006324 ORTHO05D007463 6.7e-51 205.7 225 52.0
Manes.07G007700 Manihot esculenta HOM05D006324 ORTHO05D007463 5.7e-50 202.6 188 59.6
Migut.O00526 Erythranthe guttata HOM05D006324 ORTHO05D007463 7.4e-50 202.2 224 51.3
Atru.chr11.2585 Acer truncatum HOM05D006324 ORTHO05D007463 9.7e-50 201.8 227 51.5
Ciclev10032828m.g Citrus clementina HOM05D006324 ORTHO05D007463 1.6e-49 201.1 226 50.0
Nitab4.5_0005981g0020 Nicotiana tabacum HOM05D006324 ORTHO05D007463 1.6e-49 201.1 186 57.0
Sp6g33690 Schrenkiella parvula HOM05D006324 ORTHO05D007463 2.2e-49 200.7 232 51.3
unitig_8.g3776 Utricularia gibba HOM05D006324 ORTHO05D007463 2.8e-49 200.3 238 48.7
vmacro13685 Vaccinium macrocarpon HOM05D006324 ORTHO05D007463 6.3e-49 199.1 215 52.6
Thhalv10014674m.g Eutrema salsugineum HOM05D006324 ORTHO05D007463 3.1e-48 196.8 236 50.0
MSTRG.20569 Avicennia marina HOM05D006324 ORTHO05D007463 9.0e-48 195.3 227 48.9
Nitab4.5_0000707g0250 Nicotiana tabacum HOM05D006324 ORTHO05D007463 1.5e-47 194.5 186 55.9
Lj9C636G13 Lonicera japonica HOM05D006324 ORTHO05D007463 1.7e-46 191.0 260 43.5
Lsat_1_v5_gn_1_105261 Lactuca sativa HOM05D006324 ORTHO05D007463 3.8e-46 189.9 222 48.2
PGSC0003DMG401006791 Solanum tuberosum HOM05D006324 ORTHO05D007463 3.8e-46 189.9 189 54.0
Nn7g36262 Nelumbo nucifera HOM05D006324 ORTHO05D007463 5.0e-46 189.5 189 52.9
A10p27710 Brassica napus HOM05D000446 ORTHO05D000321 6.5e-46 189.1 238 48.3
CiPaw.14G001800 Carya illinoinensis HOM05D006324 ORTHO05D007463 1.9e-45 187.6 192 55.2
BcaB05g21537 Brassica carinata HOM05D006324 ORTHO05D007463 4.2e-45 186.4 233 48.9
BcaB08g37192 Brassica carinata HOM05D000446 ORTHO05D000321 9.4e-45 185.3 254 46.1
COL.COLO4_24418 Corchorus olitorius HOM05D006324 ORTHO05D007463 9.4e-45 185.3 171 57.9
C09p67800 Brassica napus HOM05D000446 ORTHO05D000321 1.2e-44 184.9 238 47.9
EL10Ac2g04346 Beta vulgaris HOM05D006324 ORTHO05D007463 4.6e-44 183.0 194 53.6
MBI04_g17676_MAGBIO Magnolia biondii HOM05D006324 ORTHO05D007463 4.6e-44 183.0 211 47.4
BraA02t04996Z Brassica rapa HOM05D006324 ORTHO05D007463 7.9e-44 182.2 228 48.2
AUR62009399 Chenopodium quinoa HOM05D006324 ORTHO05D007463 7.9e-44 182.2 186 54.8
AUR62023082 Chenopodium quinoa HOM05D006324 ORTHO05D007463 1.8e-43 181.0 186 54.3
BraA10t44823Z Brassica rapa HOM05D000446 ORTHO05D000321 3.0e-43 180.3 235 45.5
CARHR203710 Cardamine hirsuta HOM05D006324 ORTHO05D007463 1.5e-42 177.9 230 47.0
BcaC03g13270 Brassica carinata HOM05D006324 ORTHO05D007463 2.5e-42 177.2 227 47.1
C02p04000 Brassica napus HOM05D006324 ORTHO05D007463 2.5e-42 177.2 227 47.1
BcaB08g37153 Brassica carinata HOM05D006324 ORTHO05D007463 5.7e-42 176.0 172 55.2
HanXRQChr01g0015801 Helianthus annuus HOM05D006324 ORTHO05D007463 5.7e-42 176.0 174 51.1
BolC9t59542H Brassica oleracea HOM05D000446 ORTHO05D000321 7.4e-42 175.6 273 42.5
Os07g0232200 Oryza sativa ssp. japonica HOM05D006324 ORTHO05D007463 9.7e-42 175.3 227 46.7
Aa31LG3G17390 Aethionema arabicum HOM05D006324 ORTHO05D007463 1.3e-41 174.9 152 59.2
SEGI_35641 Sequoiadendron giganteum HOM05D006324 ORTHO05D007463 2.2e-41 174.1 227 45.4
HPP92_005467 Vanilla planifolia HOM05D006324 ORTHO05D007463 4.8e-41 172.9 190 50.0
A02p00110 Brassica napus HOM05D006324 ORTHO05D007463 4.1e-40 169.9 256 43.0
MBI02_g23139_MAGBIO Magnolia biondii HOM05D006324 ORTHO05D007463 1.3e-38 164.9 202 47.5
Zm00001eb095000 Zea mays HOM05D006324 ORTHO05D007463 3.8e-38 163.3 200 48.0
SGA_v2.0_scaffold119G32747 Striga asiatica HOM05D006324 ORTHO05D007463 6.5e-38 162.5 200 47.5
ClCG09G003970 Citrullus lanatus HOM05D006324 ORTHO05D007463 4.2e-37 159.8 109 67.9
Mapoly0022s0092 Marchantia polymorpha HOM05D006324 ORTHO05D007463 2.7e-36 157.1 160 49.4
SMO331G0043 Selaginella moellendorffii HOM05D006324 ORTHO05D007463 1.8e-35 154.5 114 58.8
FAN10G1589 Fragaria x ananassa HOM05D006324 ORTHO05D007463 2.3e-35 154.1 197 48.7
BolC2t06362H Brassica oleracea HOM05D006324 ORTHO05D007463 1.1e-34 151.8 209 45.9
DCAR_023954 Daucus carota HOM05D006324 ORTHO05D007463 2.8e-33 147.1 189 46.0
ATR0618G422 Amborella trichopoda HOM05D006324 ORTHO05D007463 3.1e-32 143.7 199 42.2
Psat0s1243g0040 Pisum sativum HOM05D006324 ORTHO05D007463 2.0e-31 141.0 141 58.9
Cre13.g574800 Chlamydomonas reinhardtii HOM05D006324 ORTHO05D007463 1.0e-30 138.7 157 46.5
Aa31sc1834G10 Aethionema arabicum HOM05D006324 ORTHO05D007463 1.9e-29 134.4 90 67.8
SHI04081 Sapria himalayana HOM05D006324 ORTHO05D007463 1.2e-28 131.7 119 54.6
CDE02G1674 Ceratophyllum demersum HOM05D006324 ORTHO05D007463 6.7e-27 125.9 236 36.9
Pp3c20_23480 Physcomitrium patens HOM05D006324 ORTHO05D007463 8.8e-27 125.6 111 55.9
AUR62027968 Chenopodium quinoa HOM05D006324 ORTHO05D007463 4.5e-23 113.2 59 81.4
CBR_g29320 Chara braunii HOM05D006324 ORTHO05D007463 1.0e-22 112.1 79 62.0
MCO04G106 Micromonas commoda HOM05D006324 ORTHO05D007463 2.2e-22 110.9 101 47.5
Nitab4.5_0000087g0020 Nicotiana tabacum HOM05D006324 ORTHO05D007463 3.8e-22 110.2 156 43.6
AagrBONN_evm.TU.Sc2ySwM_344.4124 Anthoceros agrestis HOM05D006324 ORTHO05D007463 2.3e-19 100.9 116 41.4
AUR62032791 Chenopodium quinoa HOM05D000001 ORTHO05D000501 8.5e-14 82.4 49 71.4
PRCOL_00001468 Prasinoderma coloniale HOM05D006324 ORTHO05D007463 2.3e-11 74.3 83 47.0
AagrBONN_evm.TU.Sc2ySwM_117.1159 Anthoceros agrestis HOM05D006324 ORTHO05D007463 2.6e-10 70.9 127 37.0
AUR62042252 Chenopodium quinoa HOM05D006324 ORTHO05D007463 8.3e-09 65.9 43 67.4
Cfa026803 Carpinus fangiana HOM05D006324 ORTHO05D007463 4.1e-08 63.5 113 31.9
ClCG09G003980 Citrullus lanatus HOM05D006324 ORTHO05D007463 1.3e-06 58.5 26 92.3


User provided reference genes

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