Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.N25L3F Arachis hypogaea HOM05D006460 ORTHO05D008143 2.2e-309 1064.7 508 100.0
arahy.Tifrunner.gnm1.ann1.R72PZK Arachis hypogaea HOM05D006460 ORTHO05D008143 2.2e-264 915.2 521 87.1
VMungo1215G1636 Vigna mungo HOM05D006460 ORTHO05D008143 3.0e-213 745.3 488 73.8
Ca_12543_v3 Cicer arietinum L. HOM05D006460 ORTHO05D008143 3.9e-213 745.0 484 73.8
Phvul.003G019300 Phaseolus vulgaris HOM05D006460 ORTHO05D008143 1.6e-211 739.6 485 73.8
Glyma.07G170000 Glycine max HOM05D006460 ORTHO05D008143 4.0e-210 734.9 488 73.2
Lj2g0013221 Lotus japonicus HOM05D006460 ORTHO05D008143 5.3e-210 734.6 487 72.7
Medtr1g032120 Medicago truncatula HOM05D006460 ORTHO05D008143 3.8e-208 728.4 485 72.0
Lalb_Chr17g0338451 Lupinus albus HOM05D006460 ORTHO05D008143 6.4e-208 727.6 486 73.0
Psat6g046360 Pisum sativum HOM05D006460 ORTHO05D008143 8.4e-208 727.2 485 71.8
TPR.G36866 Trifolium pratense HOM05D006460 ORTHO05D008143 1.9e-204 716.1 520 67.5
QL12p034319 Quercus lobata HOM05D006460 ORTHO05D008143 1.5e-172 610.1 494 61.1
MD09G1293200 Malus domestica HOM05D006460 ORTHO05D008143 2.6e-172 609.4 490 60.8
CiPaw.04G089700 Carya illinoinensis HOM05D006460 ORTHO05D008143 3.3e-172 609.0 495 62.6
Prupe.3G004500 Prunus persica HOM05D006460 ORTHO05D008143 5.7e-172 608.2 498 61.0
Haze_05122 Corylus avellana HOM05D006460 ORTHO05D008143 3.7e-171 605.5 486 61.1
Ciclev10001046m.g Citrus clementina HOM05D006460 ORTHO05D008143 1.8e-170 603.2 488 62.1
Eucgr.H00886 Eucalyptus grandis HOM05D006460 ORTHO05D008143 2.6e-169 599.4 480 62.7
Duzib138G1376 Durio zibethinus HOM05D006460 ORTHO05D008143 3.8e-168 595.5 483 60.5
Atru.chr5.915 Acer truncatum HOM05D006460 ORTHO05D008143 2.5e-167 592.8 488 59.8
Sabra02G0165800 Salix brachista HOM05D006460 ORTHO05D008143 6.1e-166 588.2 499 59.7
Potri.002G189800 Populus trichocarpa HOM05D006460 ORTHO05D008143 8.0e-166 587.8 494 59.9
Sc17g0000180 Simmondsia chinensis HOM05D006460 ORTHO05D008143 1.2e-164 583.9 480 59.2
TWI14G0400 Tripterygium wilfordii HOM05D006460 ORTHO05D008143 5.7e-164 581.6 485 60.0
GSVIVG01028196001 Vitis vinifera HOM05D006460 ORTHO05D008143 5.7e-164 581.6 488 59.8
FvH4_1g26500 Fragaria vesca HOM05D006460 ORTHO05D008143 9.7e-164 580.9 496 58.5
CANSAT56G1882 Cannabis sativa HOM05D006460 ORTHO05D008143 1.3e-163 580.5 493 59.4
FAN28G1427 Fragaria x ananassa HOM05D006460 ORTHO05D008143 1.1e-162 577.4 499 57.9
COL.COLO4_23162 Corchorus olitorius HOM05D006460 ORTHO05D008143 1.8e-162 576.6 480 58.8
Gorai.001G146600 Gossypium raimondii HOM05D006460 ORTHO05D008143 2.4e-162 576.2 486 58.6
Gohir.D07G134900 Gossypium hirsutum HOM05D006460 ORTHO05D008143 7.0e-162 574.7 486 58.4
RcHm_v2.0_Chr3g0486571 Rosa chinensis HOM05D006460 ORTHO05D008143 1.6e-161 573.5 497 57.9
Nn4g25417 Nelumbo nucifera HOM05D006460 ORTHO05D008143 2.7e-161 572.8 509 58.0
TAR362G0080 Trochodendron aralioides HOM05D006460 ORTHO05D008143 7.7e-161 571.2 505 58.4
Sed0027463 Sechium edule HOM05D006460 ORTHO05D008143 6.5e-160 568.2 482 58.9
PGR083G0788 Punica granatum HOM05D006460 ORTHO05D008143 5.5e-159 565.1 485 58.8
Cpa.g.sc543.2 Carica papaya HOM05D006460 ORTHO05D008143 5.7e-156 555.1 492 56.3
Actinidia21358 Actinidia chinensis HOM05D006460 ORTHO05D008143 2.2e-155 553.1 500 57.4
Thhalv10028644m.g Eutrema salsugineum HOM05D006460 ORTHO05D008143 2.8e-155 552.7 486 57.2
Thhalv10028645m.g Eutrema salsugineum HOM05D006460 ORTHO05D008143 2.8e-155 552.7 486 57.2
ClCG09G004700 Citrullus lanatus HOM05D006460 ORTHO05D008143 1.4e-154 550.4 493 57.2
THA.LOC104801320 Tarenaya hassleriana HOM05D006460 ORTHO05D008143 4.2e-151 538.9 480 56.0
Thecc.01G322200 Theobroma cacao HOM05D006460 ORTHO05D008143 5.5e-151 538.5 482 57.9
CSS0037090 Camellia sinensis var. sinensis HOM05D006460 ORTHO05D008143 2.1e-150 536.6 509 54.0
vmacro02372 Vaccinium macrocarpon HOM05D006460 ORTHO05D008143 2.1e-150 536.6 544 52.4
Cc01_g21920 Coffea canephora HOM05D006460 ORTHO05D008143 2.8e-150 536.2 492 54.9
Lj1C11T12 Lonicera japonica HOM05D006460 ORTHO05D008143 2.8e-150 536.2 501 55.5
Manes.05G010900 Manihot esculenta HOM05D006460 ORTHO05D008143 2.8e-150 536.2 484 57.4
Aqoxy5G02768 Aquilegia oxysepala HOM05D006460 ORTHO05D008143 1.0e-149 534.3 492 55.3
AUR62011736 Chenopodium quinoa HOM05D006460 ORTHO05D008143 1.4e-149 533.9 480 55.6
AT4G01880 Arabidopsis thaliana HOM05D006460 ORTHO05D008143 2.3e-149 533.1 488 55.3
AUR62024570 Chenopodium quinoa HOM05D006460 ORTHO05D008143 2.3e-149 533.1 480 56.0
Carub.0006s3536 Capsella rubella HOM05D006460 ORTHO05D008143 2.6e-148 529.6 483 54.7
Solyc01g068050.3 Solanum lycopersicum HOM05D006460 ORTHO05D008143 5.7e-148 528.5 481 55.3
Sp6g01720 Schrenkiella parvula HOM05D006460 ORTHO05D008143 9.8e-148 527.7 488 54.5
Gohir.A07G130500 Gossypium hirsutum HOM05D006460 ORTHO05D008143 2.8e-147 526.2 483 55.7
CAN.G100.27 Capsicum annuum HOM05D006460 ORTHO05D008143 4.9e-147 525.4 484 55.4
SalBow6G2760 Salvia bowleyana HOM05D006460 ORTHO05D008143 8.3e-147 524.6 487 54.8
AL6G51420 Arabidopsis lyrata HOM05D006460 ORTHO05D008143 1.1e-146 524.2 489 54.8
CARHR249840 Cardamine hirsuta HOM05D006460 ORTHO05D008143 1.4e-146 523.9 483 54.0
DCAR_012316 Daucus carota HOM05D006460 ORTHO05D008143 1.4e-146 523.9 495 53.5
PGSC0003DMG400005211 Solanum tuberosum HOM05D006460 ORTHO05D008143 1.4e-146 523.9 481 54.5
FAN19G0891 Fragaria x ananassa HOM05D006460 ORTHO05D008143 1.8e-146 523.5 496 55.0
FAN26G0500 Fragaria x ananassa HOM05D006460 ORTHO05D008143 9.2e-146 521.2 499 54.3
BcaB01g02385 Brassica carinata HOM05D006460 ORTHO05D008143 2.0e-145 520.0 483 54.9
BcaC01g06799 Brassica carinata HOM05D006460 ORTHO05D008143 2.7e-145 519.6 480 54.4
BolC3t16117H Brassica oleracea HOM05D006460 ORTHO05D008143 2.7e-145 519.6 480 54.4
C03p38430 Brassica napus HOM05D006460 ORTHO05D008143 4.5e-145 518.8 480 54.6
A03p31440 Brassica napus HOM05D006460 ORTHO05D008143 5.9e-145 518.5 480 54.4
Oeu002575.1 Olea europaea HOM05D006460 ORTHO05D008143 5.9e-145 518.5 485 54.4
BraA03t12325Z Brassica rapa HOM05D006460 ORTHO05D008143 7.8e-145 518.1 480 55.2
PSO357G0369 Papaver somniferum HOM05D006460 ORTHO05D008143 6.6e-144 515.0 486 54.1
Cfa004883 Carpinus fangiana HOM05D006460 ORTHO05D008143 1.9e-143 513.5 440 59.3
HanXRQChr13g0414441 Helianthus annuus HOM05D006460 ORTHO05D008143 7.3e-143 511.5 479 54.1
MSTRG.21724 Avicennia marina HOM05D006460 ORTHO05D008143 1.2e-142 510.8 486 54.3
Migut.D00030 Erythranthe guttata HOM05D006460 ORTHO05D008143 3.1e-141 506.1 487 53.2
Hund09677 Selenicereus undatus HOM05D006460 ORTHO05D008143 6.8e-141 505.0 485 53.4
Nitab4.5_0000222g0270 Nicotiana tabacum HOM05D006460 ORTHO05D008143 8.9e-141 504.6 516 51.9
Aa31LG5G1480 Aethionema arabicum HOM05D006460 ORTHO05D008143 2.9e-139 499.6 511 51.1
CDE08G1018 Ceratophyllum demersum HOM05D006460 ORTHO05D008143 1.9e-138 496.9 500 53.8
Rhsim13G0001100 Rhododendron simsii HOM05D006460 ORTHO05D008143 1.2e-137 494.2 440 57.7
Lsat_1_v5_gn_8_167341 Lactuca sativa HOM05D006460 ORTHO05D008143 3.9e-136 489.2 478 54.6
SGA_v2.0_scaffold417G51258 Striga asiatica HOM05D006460 ORTHO05D008143 4.7e-134 482.3 486 51.9
ATR0796G118 Amborella trichopoda HOM05D006460 ORTHO05D008143 2.3e-133 479.9 518 50.0
MELO3C023610.2 Cucumis melo HOM05D006460 ORTHO05D008143 1.7e-131 473.8 469 53.1
EL10As5g23582 Beta vulgaris HOM05D006460 ORTHO05D008143 1.6e-129 467.2 497 50.9
Eucgr.L00887 Eucalyptus grandis HOM05D006460 ORTHO05D008143 2.3e-128 463.4 374 63.1
ECA236G0789 Erigeron canadensis HOM05D004810 ORTHO05D006272 1.9e-127 460.3 445 52.6
HPP92_010877 Vanilla planifolia HOM05D000746 ORTHO05D000573 5.2e-125 452.2 489 48.1
CsaV3_7G030430 Cucumis sativus L. HOM05D006460 ORTHO05D008143 3.5e-121 439.5 388 59.0
PSO170G6216 Papaver somniferum HOM05D006460 ORTHO05D008143 2.8e-118 429.9 416 53.1
PSO384G3244 Papaver somniferum HOM05D006460 ORTHO05D008143 2.8e-118 429.9 415 53.3
Nitab4.5_0002994g0020 Nicotiana tabacum HOM05D006460 ORTHO05D008143 4.7e-118 429.1 512 46.3
CSS0008981 Camellia sinensis var. sinensis HOM05D006460 ORTHO05D008143 7.8e-113 411.8 383 54.8
Ah.11g045760 Amaranthus hybridus HOM05D006460 ORTHO05D008143 2.5e-111 406.8 482 46.5
Dinv33158 Davidia involucrata HOM05D001974 ORTHO05D001995 9.0e-109 398.3 360 56.9
Zm00001eb211340 Zea mays HOM05D006460 ORTHO05D008143 2.3e-104 383.6 404 48.5
AagrBONN_evm.TU.Sc2ySwM_344.3324 Anthoceros agrestis HOM05D006460 ORTHO05D008143 5.6e-103 379.0 491 41.5
Pp3c21_16200 Physcomitrium patens HOM05D006460 ORTHO05D008143 5.6e-103 379.0 544 39.0
AagrBONN_evm.TU.Sc2ySwM_228.322 Anthoceros agrestis HOM05D006460 ORTHO05D008143 1.4e-101 374.4 492 41.3
Mapoly0095s0050 Marchantia polymorpha HOM05D006460 ORTHO05D008143 4.9e-99 365.9 512 39.5
SMO010G0007 Selaginella moellendorffii HOM05D006460 ORTHO05D008143 7.1e-90 335.5 484 38.2
Sopen01g029980 Solanum pennellii HOM05D006460 ORTHO05D008143 5.1e-88 329.3 313 55.0
Peaxi162Scf00919g00047 Petunia axillaris HOM05D006460 ORTHO05D008143 5.8e-84 315.8 378 47.6
MBI18_g28900_MAGBIO Magnolia biondii HOM05D006460 ORTHO05D008143 1.3e-75 288.1 464 39.0
unitig_578.g16638 Utricularia gibba HOM05D006460 ORTHO05D008143 4.1e-69 266.5 243 53.9
Os03g0833200 Oryza sativa ssp. japonica HOM05D006460 ORTHO05D008143 1.1e-58 231.9 249 49.0
MCO13G012 Micromonas commoda HOM05D006460 ORTHO05D008143 9.4e-50 202.2 479 30.3
SEGI_40178 Sequoiadendron giganteum HOM05D006460 ORTHO05D008143 8.3e-46 189.1 280 41.4
AUR62029044 Chenopodium quinoa HOM05D006460 ORTHO05D008143 6.1e-41 172.9 156 57.7
SMO339G0034 Selaginella moellendorffii HOM05D006460 ORTHO05D008143 1.4e-40 171.8 273 36.3
MD17G1281000 Malus domestica HOM05D006460 ORTHO05D008143 8.8e-40 169.1 237 42.6
AUR62036055 Chenopodium quinoa HOM05D006460 ORTHO05D008143 1.2e-39 168.7 156 55.8
PRCOL_00001885 Prasinoderma coloniale HOM05D006460 ORTHO05D008143 2.7e-36 157.5 506 26.7
Cre16.g654992 Chlamydomonas reinhardtii HOM05D006460 ORTHO05D008143 1.1e-26 125.6 810 21.2
QL04p085746 Quercus lobata HOM05D006460 ORTHO05D008143 2.0e-20 104.8 107 48.6
AagrBONN_evm.TU.Sc2ySwM_228.45 Anthoceros agrestis HOM05D006460 ORTHO05D008143 2.5e-18 97.8 215 32.1
CBR_g49426 Chara braunii HOM05D006460 ORTHO05D008143 2.1e-17 94.7 117 40.2
RcHm_v2.0_Chr7g0232271 Rosa chinensis HOM05D006460 ORTHO05D008143 6.8e-16 89.7 79 59.5
Hund09679 Selenicereus undatus HOM05D006460 ORTHO05D008143 3.4e-15 87.4 115 40.9
AUR62007801 Chenopodium quinoa HOM05D006460 ORTHO05D008143 6.0e-12 76.6 79 50.6
QL05p033637 Quercus lobata HOM05D000101 ORTHO05D000089 8.6e-11 72.8 68 50.0
AUR62043166 Chenopodium quinoa HOM05D006460 ORTHO05D008143 2.0e-07 61.6 63 50.8
CDE02G3709 Ceratophyllum demersum HOM05D006460 ORTHO05D008143 3.7e-06 57.4 44 59.1


User provided reference genes

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