Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.MVM3BY Arachis hypogaea HOM05D004413 ORTHO05D005199 2.1e-227 792.0 392 100.0
arahy.Tifrunner.gnm1.ann1.0XNQ2B Arachis hypogaea HOM05D004413 ORTHO05D005199 5.5e-215 750.7 392 95.2
arahy.Tifrunner.gnm1.ann1.X2RX6E Arachis hypogaea HOM05D004413 ORTHO05D005199 9.9e-124 447.6 419 58.5
arahy.Tifrunner.gnm1.ann1.8FHU3N Arachis hypogaea HOM05D004413 ORTHO05D005199 1.6e-121 440.3 419 57.8
Glyma.09G152600 Glycine max HOM05D004413 ORTHO05D005199 7.4e-119 431.4 421 58.0
Phvul.004G126300 Phaseolus vulgaris HOM05D004413 ORTHO05D005199 4.8e-118 428.7 403 57.3
Glyma.16G203400 Glycine max HOM05D004413 ORTHO05D005199 1.1e-117 427.6 421 57.2
VMungo0464G1648 Vigna mungo HOM05D004413 ORTHO05D005199 1.1e-117 427.6 428 55.6
Medtr6g463300 Medicago truncatula HOM05D004413 ORTHO05D005199 1.0e-115 421.0 433 55.7
Lalb_Chr19g0124241 Lupinus albus HOM05D004413 ORTHO05D005199 3.8e-115 419.1 430 57.0
TPR.G25309 Trifolium pratense HOM05D004413 ORTHO05D005199 6.0e-113 411.8 413 55.9
Ca_02163_v3 Cicer arietinum L. HOM05D004413 ORTHO05D005199 5.1e-112 408.7 397 55.9
Lj2g0027526 Lotus japonicus HOM05D004413 ORTHO05D005199 3.2e-106 389.4 399 56.1
Cfa010719 Carpinus fangiana HOM05D004413 ORTHO05D005199 6.1e-105 385.2 421 53.7
Psat1g110760 Pisum sativum HOM05D004413 ORTHO05D005199 6.1e-105 385.2 442 52.7
Haze_03259 Corylus avellana HOM05D004413 ORTHO05D005199 1.0e-104 384.4 422 53.3
TPR.G37653 Trifolium pratense HOM05D004413 ORTHO05D005199 5.1e-104 382.1 433 52.7
RcHm_v2.0_Chr7g0230361 Rosa chinensis HOM05D004413 ORTHO05D005199 6.3e-102 375.2 405 51.4
Lalb_Chr19g0124231 Lupinus albus HOM05D004413 ORTHO05D005199 5.3e-101 372.1 282 66.0
Ciclev10031642m.g Citrus clementina HOM05D004413 ORTHO05D005199 1.5e-100 370.5 417 51.1
Manes.10G150400 Manihot esculenta HOM05D004413 ORTHO05D005199 7.7e-100 368.2 424 49.8
CSS0018065 Camellia sinensis var. sinensis HOM05D004413 ORTHO05D005199 2.2e-99 366.7 413 50.1
Gohir.A08G146400 Gossypium hirsutum HOM05D004413 ORTHO05D005199 5.0e-99 365.5 411 50.1
Gorai.004G174800 Gossypium raimondii HOM05D004413 ORTHO05D005199 6.5e-99 365.2 411 49.9
Gohir.D08G167400 Gossypium hirsutum HOM05D004413 ORTHO05D005199 1.4e-98 364.0 412 49.5
FAN18G0644 Fragaria x ananassa HOM05D004413 ORTHO05D005199 1.9e-98 363.6 409 49.6
Psat6g015760 Pisum sativum HOM05D004413 ORTHO05D005199 1.9e-98 363.6 307 63.2
FAN13G1137 Fragaria x ananassa HOM05D004413 ORTHO05D005199 2.5e-98 363.2 409 49.9
Thecc.01G415800 Theobroma cacao HOM05D004413 ORTHO05D005199 9.4e-98 361.3 406 51.2
Duzib138G1189 Durio zibethinus HOM05D004413 ORTHO05D005199 2.7e-97 359.8 406 51.0
MD07G1003300 Malus domestica HOM05D004413 ORTHO05D005199 2.7e-97 359.8 375 53.3
FvH4_5g32720 Fragaria vesca HOM05D004413 ORTHO05D005199 3.6e-97 359.4 409 49.1
Gohir.A01G019401 Gossypium hirsutum HOM05D004413 ORTHO05D005199 1.4e-96 357.5 409 49.4
Gohir.A08G005500 Gossypium hirsutum HOM05D004413 ORTHO05D005199 2.3e-96 356.7 412 48.8
Potri.001G228000 Populus trichocarpa HOM05D004413 ORTHO05D005199 5.1e-96 355.5 426 49.1
QL04p000397 Quercus lobata HOM05D004413 ORTHO05D005199 1.1e-95 354.4 473 44.6
FAN08G0618 Fragaria x ananassa HOM05D004413 ORTHO05D005199 3.3e-95 352.8 411 48.2
TWI09G1219 Tripterygium wilfordii HOM05D004413 ORTHO05D005199 3.3e-95 352.8 427 47.8
QL04p002426 Quercus lobata HOM05D004413 ORTHO05D005199 4.4e-95 352.4 416 47.8
Aa31LG1G19950 Aethionema arabicum HOM05D004413 ORTHO05D005199 1.3e-94 350.9 394 50.0
COL.COLO4_30064 Corchorus olitorius HOM05D004413 ORTHO05D005199 8.2e-94 348.2 404 49.8
GSVIVG01001402001 Vitis vinifera HOM05D004413 ORTHO05D005199 2.4e-93 346.7 382 49.5
Sc17g0005470 Simmondsia chinensis HOM05D004413 ORTHO05D005199 4.1e-93 345.9 388 48.7
MD02G1318000 Malus domestica HOM05D004413 ORTHO05D005199 5.3e-93 345.5 369 51.8
Atru.chr11.2687 Acer truncatum HOM05D004413 ORTHO05D005199 4.5e-92 342.4 424 48.1
THA.LOC104826126 Tarenaya hassleriana HOM05D004413 ORTHO05D005199 1.4e-90 337.4 370 49.5
Sabra16G0135900 Salix brachista HOM05D004413 ORTHO05D005199 6.1e-89 332.0 438 47.3
TAR636G2532 Trochodendron aralioides HOM05D004413 ORTHO05D005199 6.1e-89 332.0 434 46.5
CANSAT01G0573 Cannabis sativa HOM05D004413 ORTHO05D005199 1.4e-88 330.9 373 48.3
MSTRG.28094 Avicennia marina HOM05D004413 ORTHO05D005199 1.8e-88 330.5 433 46.0
CiPaw.16G012500 Carya illinoinensis HOM05D004413 ORTHO05D005199 1.8e-88 330.5 386 49.7
CANSAT01G1789 Cannabis sativa HOM05D004413 ORTHO05D005199 3.0e-88 329.7 373 48.3
Oeu013591.1 Olea europaea HOM05D004413 ORTHO05D005199 3.9e-88 329.3 399 47.4
Carub.0001s0418 Capsella rubella HOM05D004413 ORTHO05D005199 5.2e-88 328.9 405 46.9
ClCG09G003830 Citrullus lanatus HOM05D004413 ORTHO05D005199 5.2e-88 328.9 403 47.6
AT1G04945 Arabidopsis thaliana HOM05D004413 ORTHO05D005199 1.5e-87 327.4 396 48.5
Cpa.g.sc189.31 Carica papaya HOM05D004413 ORTHO05D005199 3.3e-87 326.2 373 49.6
PGR031G3941 Punica granatum HOM05D004413 ORTHO05D005199 5.7e-87 325.5 393 46.1
AL1G14670 Arabidopsis lyrata HOM05D004413 ORTHO05D005199 1.7e-86 323.9 396 48.2
Sed0010518 Sechium edule HOM05D004413 ORTHO05D005199 2.2e-86 323.6 387 47.8
Sed0007945 Sechium edule HOM05D004413 ORTHO05D005199 8.2e-86 321.6 405 46.2
Sp1g03790 Schrenkiella parvula HOM05D004413 ORTHO05D005199 1.4e-85 320.9 389 46.8
CANSAT64G0940 Cannabis sativa HOM05D004413 ORTHO05D005199 1.6e-84 317.4 395 46.8
Nn3g19386 Nelumbo nucifera HOM05D004413 ORTHO05D005199 4.5e-84 315.8 447 43.6
vmacro21162 Vaccinium macrocarpon HOM05D004413 ORTHO05D005199 4.5e-84 315.8 415 45.3
Nitab4.5_0001006g0010 Nicotiana tabacum HOM05D004413 ORTHO05D005199 5.9e-84 315.5 409 47.2
GSVIVG01037065001 Vitis vinifera HOM05D004413 ORTHO05D005199 7.7e-84 315.1 283 55.8
Atru.chr1.1383 Acer truncatum HOM05D004413 ORTHO05D005199 1.7e-83 313.9 263 60.8
A08p36630 Brassica napus HOM05D004413 ORTHO05D005199 2.2e-83 313.5 403 45.9
BraA08t35565Z Brassica rapa HOM05D004413 ORTHO05D005199 2.2e-83 313.5 403 45.9
Rhsim01G0132100 Rhododendron simsii HOM05D004413 ORTHO05D005199 2.2e-83 313.5 475 42.1
BcaC07g36870 Brassica carinata HOM05D004413 ORTHO05D005199 2.9e-83 313.2 383 47.0
Prupe.2G005000 Prunus persica HOM05D004413 ORTHO05D005199 2.9e-83 313.2 377 49.3
Aqoxy2G00074 Aquilegia oxysepala HOM05D004413 ORTHO05D005199 6.5e-83 312.0 390 46.7
Migut.N01644 Erythranthe guttata HOM05D004413 ORTHO05D005199 1.9e-82 310.5 411 43.8
BcaB03g13464 Brassica carinata HOM05D004413 ORTHO05D005199 2.5e-82 310.1 387 47.8
Nitab4.5_0000346g0070 Nicotiana tabacum HOM05D004413 ORTHO05D005199 2.5e-82 310.1 390 47.9
CsaV3_7G031400 Cucumis sativus L. HOM05D004413 ORTHO05D005199 5.5e-82 308.9 403 46.2
CARHR004350 Cardamine hirsuta HOM05D004413 ORTHO05D005199 9.4e-82 308.1 395 45.3
Thhalv10007024m.g Eutrema salsugineum HOM05D004413 ORTHO05D005199 1.2e-81 307.8 401 45.4
SGA_v2.0_scaffold95G28780 Striga asiatica HOM05D004413 ORTHO05D005199 3.6e-81 306.2 296 52.7
C08p01610 Brassica napus HOM05D004413 ORTHO05D005199 1.8e-80 303.9 402 45.3
BolC8t46964H Brassica oleracea HOM05D004413 ORTHO05D005199 1.8e-80 303.9 402 45.3
CAN.G1393.6 Capsicum annuum HOM05D004413 ORTHO05D005199 1.8e-80 303.9 259 57.5
Solyc01g074020.3 Solanum lycopersicum HOM05D004413 ORTHO05D005199 3.0e-80 303.1 330 50.3
Dinv43918 Davidia involucrata HOM05D004413 ORTHO05D005199 5.2e-80 302.4 376 44.7
Cc02_g27150 Coffea canephora HOM05D004413 ORTHO05D005199 2.8e-78 296.6 369 45.5
PSO210G0136 Papaver somniferum HOM05D004413 ORTHO05D005199 4.8e-78 295.8 392 44.4
SHI15877 Sapria himalayana HOM05D004413 ORTHO05D005199 6.3e-78 295.4 353 47.3
AUR62016087 Chenopodium quinoa HOM05D004413 ORTHO05D005199 1.8e-77 293.9 419 42.2
Peaxi162Scf01343g00011 Petunia axillaris HOM05D004413 ORTHO05D005199 2.0e-76 290.4 389 45.5
AUR62035034 Chenopodium quinoa HOM05D004413 ORTHO05D005199 5.9e-76 288.9 421 42.3
Lsat_1_v5_gn_4_46341 Lactuca sativa HOM05D004413 ORTHO05D005199 1.7e-75 287.3 385 43.6
EL10Ac3g05776 Beta vulgaris HOM05D004413 ORTHO05D005199 3.8e-75 286.2 419 40.6
PSO170G4481 Papaver somniferum HOM05D004413 ORTHO05D005199 1.5e-74 284.3 367 43.9
PSO210G4410 Papaver somniferum HOM05D004413 ORTHO05D005199 5.5e-74 282.3 392 42.3
Hund04656 Selenicereus undatus HOM05D004413 ORTHO05D005199 7.2e-74 282.0 399 42.6
CDE04G1207 Ceratophyllum demersum HOM05D004413 ORTHO05D005199 1.2e-73 281.2 427 39.8
A06p04180 Brassica napus HOM05D004413 ORTHO05D005199 2.3e-72 276.9 248 55.6
BcaC08g43081 Brassica carinata HOM05D004413 ORTHO05D005199 4.0e-72 276.2 248 56.0
Hma1.2p1_0038F.1_g024150 Hydrangea macrophylla HOM05D004413 ORTHO05D005199 4.0e-72 276.2 436 41.5
BraA06t23623Z Brassica rapa HOM05D004413 ORTHO05D005199 8.8e-72 275.0 240 56.2
CDE12G0144 Ceratophyllum demersum HOM05D004413 ORTHO05D005199 8.8e-72 275.0 427 38.9
C06p03410 Brassica napus HOM05D004413 ORTHO05D005199 1.2e-71 274.6 248 56.0
BolC6t35480H Brassica oleracea HOM05D004413 ORTHO05D005199 1.2e-71 274.6 248 56.0
HanXRQChr16g0520481 Helianthus annuus HOM05D004413 ORTHO05D005199 7.5e-71 271.9 346 45.4
MELO3C023518.2 Cucumis melo HOM05D004413 ORTHO05D005199 9.8e-71 271.6 392 43.6
Lj9A624G21 Lonicera japonica HOM05D004413 ORTHO05D005199 5.9e-68 262.3 434 40.3
HPP92_005742 Vanilla planifolia HOM05D004413 ORTHO05D005199 6.5e-67 258.8 421 39.7
Ah.07g208370 Amaranthus hybridus HOM05D004413 ORTHO05D005199 4.0e-64 249.6 407 37.6
ATR0582G367 Amborella trichopoda HOM05D004413 ORTHO05D005199 1.7e-59 234.2 282 44.3
Os01g0962500 Oryza sativa ssp. japonica HOM05D004413 ORTHO05D005199 6.1e-57 225.7 278 45.3
Zm00001eb140340 Zea mays HOM05D004413 ORTHO05D005199 1.4e-56 224.6 280 45.0
SEGI_33976 Sequoiadendron giganteum HOM05D004413 ORTHO05D005199 1.2e-55 221.5 309 43.0
unitig_578.g16701 Utricularia gibba HOM05D004413 ORTHO05D005199 4.1e-53 213.0 242 44.6
Dinv43485 Davidia involucrata HOM05D004413 ORTHO05D005199 1.7e-51 207.6 174 58.6
PGSC0003DMG400006318 Solanum tuberosum HOM05D004413 ORTHO05D005199 3.6e-49 199.9 210 52.4
Gohir.A11G220500 Gossypium hirsutum HOM05D004413 ORTHO05D005199 2.0e-47 194.1 293 41.0
SGA_v2.0_scaffold4G02237 Striga asiatica HOM05D004413 ORTHO05D005199 4.4e-47 193.0 184 51.6
Actinidia21569 Actinidia chinensis HOM05D004413 ORTHO05D005199 2.9e-46 190.3 262 42.7
ECA234G1090 Erigeron canadensis HOM05D004413 ORTHO05D005199 3.7e-46 189.9 318 38.1
Mapoly0103s0075 Marchantia polymorpha HOM05D004413 ORTHO05D005199 6.0e-44 182.6 304 37.8
Pp3c11_18200 Physcomitrium patens HOM05D004413 ORTHO05D005199 1.3e-43 181.4 233 42.1
SMO351G0528 Selaginella moellendorffii HOM05D004413 ORTHO05D005199 1.3e-43 181.4 290 38.6
AagrBONN_evm.TU.Sc2ySwM_228.625 Anthoceros agrestis HOM05D004413 ORTHO05D005199 2.8e-41 173.7 243 42.8
Cre01.g049400 Chlamydomonas reinhardtii HOM05D004413 ORTHO05D005199 8.9e-40 168.7 261 37.9
Sopen01g033580 Solanum pennellii HOM05D004413 ORTHO05D005199 1.2e-39 168.3 140 59.3
DCAR_015691 Daucus carota HOM05D004413 ORTHO05D005199 9.9e-39 165.2 137 59.1
GSVIVG01027705001 Vitis vinifera HOM05D004413 ORTHO05D005199 4.9e-38 162.9 127 62.2
Lj9A625T17 Lonicera japonica HOM05D004413 ORTHO05D005199 1.6e-36 157.9 347 34.0
CBR_g50781 Chara braunii HOM05D004413 ORTHO05D005199 1.9e-34 151.0 249 36.1
PSO170G2986 Papaver somniferum HOM05D004413 ORTHO05D005199 6.2e-33 146.0 230 36.5
Sopen01g033590 Solanum pennellii HOM05D004413 ORTHO05D005199 4.4e-31 139.8 186 46.2
Actinidia21570 Actinidia chinensis HOM05D004413 ORTHO05D005199 1.2e-28 131.7 111 59.5
Actinidia15863 Actinidia chinensis HOM05D004413 ORTHO05D005199 4.6e-28 129.8 98 63.3
GSVIVG01027710001 Vitis vinifera HOM05D004413 ORTHO05D005199 3.3e-26 123.6 101 60.4
SEGI_10444 Sequoiadendron giganteum HOM05D004413 ORTHO05D005199 2.1e-25 120.9 215 37.7
Aa31LG1G19980 Aethionema arabicum HOM05D004413 ORTHO05D005199 2.8e-25 120.6 136 51.5
A08p37250 Brassica napus HOM05D004413 ORTHO05D005199 1.8e-24 117.9 69 75.4
SEGI_03996 Sequoiadendron giganteum HOM05D004413 ORTHO05D005199 1.7e-22 111.3 215 36.3
BraA09t42095Z Brassica rapa HOM05D004413 ORTHO05D005199 7.8e-20 102.4 102 49.0
MCO07G333 Micromonas commoda HOM05D004413 ORTHO05D005199 1.3e-19 101.7 211 31.8
Manes.10G149900 Manihot esculenta HOM05D000073 ORTHO05D000033 6.6e-19 99.4 77 61.0
GSVIVG01027698001 Vitis vinifera HOM05D004413 ORTHO05D005199 6.6e-19 99.4 63 63.5
Actinidia15864 Actinidia chinensis HOM05D004413 ORTHO05D005199 2.5e-18 97.4 67 61.2
HanXRQChr11g0328201 Helianthus annuus HOM05D004413 ORTHO05D005199 1.3e-17 95.1 65 67.7
PRCOL_00005718 Prasinoderma coloniale HOM05D004413 ORTHO05D005199 8.1e-17 92.4 173 34.7
GSVIVG01018194001 Vitis vinifera HOM05D004413 ORTHO05D005199 8.1e-17 92.4 64 59.4
QL04p000430 Quercus lobata HOM05D004413 ORTHO05D005199 1.4e-13 81.6 174 33.3
TWI73G0758 Tripterygium wilfordii HOM05D004413 ORTHO05D005199 4.6e-12 76.6 103 43.7
GSVIVG01027696001 Vitis vinifera HOM05D004413 ORTHO05D005199 1.0e-11 75.5 48 62.5
DCAR_015690 Daucus carota HOM05D004413 ORTHO05D005199 9.6e-10 68.9 215 27.9
Hma1.2p1_0276F.1_g111190 Hydrangea macrophylla HOM05D005449 ORTHO05D006916 9.6e-10 68.9 48 58.3
GSVIVG01026105001 Vitis vinifera HOM05D004413 ORTHO05D005199 2.8e-09 67.4 77 45.5
GSVIVG01027714001 Vitis vinifera HOM05D004413 ORTHO05D005199 2.8e-09 67.4 160 32.5
GSVIVG01012403001 Vitis vinifera HOM05D004413 ORTHO05D005199 2.4e-08 64.3 56 51.8
TAR633G2579 Trochodendron aralioides HOM05D004413 ORTHO05D005199 5.8e-07 59.7 79 40.5


User provided reference genes

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