Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.MLY2RP Arachis hypogaea HOM05D004629 ORTHO05D006604 0.0e+00 1259.6 637 100.0
arahy.Tifrunner.gnm1.ann1.XFL7KU Arachis hypogaea HOM05D004629 ORTHO05D006604 0.0e+00 1255.4 637 99.4
VMungo0720G3137 Vigna mungo HOM05D004629 ORTHO05D006604 0.0e+00 1208.4 637 95.0
Lj5g0025778 Lotus japonicus HOM05D004629 ORTHO05D006604 0.0e+00 1207.6 637 94.7
Glyma.20G243700 Glycine max HOM05D004629 ORTHO05D006604 0.0e+00 1204.9 637 94.8
Phvul.007G006400 Phaseolus vulgaris HOM05D004629 ORTHO05D006604 0.0e+00 1203.3 637 94.5
Lalb_Chr06g0164051 Lupinus albus HOM05D004629 ORTHO05D006604 0.0e+00 1192.9 637 93.7
Glyma.10G293800 Glycine max HOM05D004629 ORTHO05D006604 0.0e+00 1189.1 631 94.3
Ca_11347_v3 Cicer arietinum L. HOM05D004629 ORTHO05D006604 0.0e+00 1187.6 636 92.9
TPR.G10403 Trifolium pratense HOM05D004629 ORTHO05D006604 0.0e+00 1184.9 635 93.1
Lalb_Chr02g0143781 Lupinus albus HOM05D004629 ORTHO05D006604 0.0e+00 1181.0 637 92.3
QL01p010068 Quercus lobata HOM05D004629 ORTHO05D006604 0.0e+00 1181.0 636 92.5
Medtr1g116140 Medicago truncatula HOM05D004629 ORTHO05D006604 0.0e+00 1180.2 636 92.1
CiPaw.13G171100 Carya illinoinensis HOM05D004629 ORTHO05D006604 0.0e+00 1177.2 637 91.2
CANSAT11G0664 Cannabis sativa HOM05D004629 ORTHO05D006604 0.0e+00 1174.5 637 91.1
Actinidia06301 Actinidia chinensis HOM05D004629 ORTHO05D006604 0.0e+00 1174.1 637 92.2
Dinv36331 Davidia involucrata HOM05D004629 ORTHO05D006604 0.0e+00 1173.7 637 91.5
Thecc.10G155600 Theobroma cacao HOM05D004629 ORTHO05D006604 0.0e+00 1172.9 635 91.7
Atru.chr3.2163_Atru.chr3.2169 Acer truncatum HOM05D004629 ORTHO05D006604 0.0e+00 1172.5 631 91.6
Duzib128G1447 Durio zibethinus HOM05D004629 ORTHO05D006604 0.0e+00 1171.8 637 91.2
SalBow2G2882 Salvia bowleyana HOM05D004629 ORTHO05D006604 0.0e+00 1171.0 633 91.8
CsaV3_1G042270 Cucumis sativus L. HOM05D004629 ORTHO05D006604 0.0e+00 1170.6 637 91.2
Cfa009633 Carpinus fangiana HOM05D004629 ORTHO05D006604 0.0e+00 1169.8 637 91.4
Ciclev10014585m.g Citrus clementina HOM05D004629 ORTHO05D006604 0.0e+00 1168.7 637 90.4
RcHm_v2.0_Chr5g0081161 Rosa chinensis HOM05D004629 ORTHO05D006604 0.0e+00 1168.7 637 91.1
Potri.003G215100 Populus trichocarpa HOM05D004629 ORTHO05D006604 0.0e+00 1168.3 637 91.2
EL10Ac4g10337 Beta vulgaris HOM05D004629 ORTHO05D006604 0.0e+00 1167.5 637 90.6
MELO3C015653.2 Cucumis melo HOM05D004629 ORTHO05D006604 0.0e+00 1166.4 633 91.2
Prupe.6G013000 Prunus persica HOM05D004629 ORTHO05D006604 0.0e+00 1166.4 636 91.0
FAN11G0302 Fragaria x ananassa HOM05D004629 ORTHO05D006604 0.0e+00 1165.6 637 90.9
MBI13_g20490_MAGBIO Magnolia biondii HOM05D004629 ORTHO05D006604 0.0e+00 1165.6 637 90.9
Oeu038860.1 Olea europaea HOM05D004629 ORTHO05D006604 0.0e+00 1164.4 634 91.0
MD11G1015100 Malus domestica HOM05D004629 ORTHO05D006604 0.0e+00 1163.7 635 91.0
Manes.03G089535 Manihot esculenta HOM05D004629 ORTHO05D006604 0.0e+00 1161.7 637 90.6
Potri.001G010800 Populus trichocarpa HOM05D004629 ORTHO05D006604 0.0e+00 1161.7 637 90.4
SGA_v2.0_scaffold1G00754 Striga asiatica HOM05D004629 ORTHO05D006604 0.0e+00 1161.0 634 90.9
Haze_23000 Corylus avellana HOM05D004629 ORTHO05D006604 0.0e+00 1160.2 633 91.0
Rhsim01G0186400 Rhododendron simsii HOM05D004629 ORTHO05D006604 0.0e+00 1159.8 637 90.3
Gohir.A05G400500 Gossypium hirsutum HOM05D004629 ORTHO05D006604 0.0e+00 1159.4 637 90.4
Cc01_g02770 Coffea canephora HOM05D004629 ORTHO05D006604 0.0e+00 1158.7 633 90.5
FAN25G1401 Fragaria x ananassa HOM05D004629 ORTHO05D006604 0.0e+00 1158.7 637 90.3
Ah.04g161630 Amaranthus hybridus HOM05D004629 ORTHO05D006604 0.0e+00 1158.3 636 89.8
Gorai.012G017900 Gossypium raimondii HOM05D004629 ORTHO05D006604 0.0e+00 1158.3 637 90.4
MD03G1012400 Malus domestica HOM05D004629 ORTHO05D006604 0.0e+00 1158.3 636 90.6
Sabra03G0160400 Salix brachista HOM05D004629 ORTHO05D006604 0.0e+00 1157.9 647 89.6
Hund21652 Selenicereus undatus HOM05D004629 ORTHO05D006604 0.0e+00 1157.1 637 90.1
Gohir.D04G015400 Gossypium hirsutum HOM05D004629 ORTHO05D006604 0.0e+00 1156.4 637 90.3
AUR62000039 Chenopodium quinoa HOM05D004629 ORTHO05D006604 0.0e+00 1154.0 664 87.5
Sed0008832 Sechium edule HOM05D004629 ORTHO05D006604 0.0e+00 1153.3 636 89.9
FAN16G0373 Fragaria x ananassa HOM05D004629 ORTHO05D006604 0.0e+00 1152.9 631 90.6
Nitab4.5_0005132g0060 Nicotiana tabacum HOM05D004629 ORTHO05D006604 0.0e+00 1152.1 633 90.2
TWI60G1346 Tripterygium wilfordii HOM05D004629 ORTHO05D006604 0.0e+00 1152.1 637 89.6
Sopen01g002270 Solanum pennellii HOM05D004629 ORTHO05D006604 0.0e+00 1150.2 633 90.5
MSTRG.18392 Avicennia marina HOM05D004629 ORTHO05D006604 0.0e+00 1149.8 633 90.2
Eucgr.B02610 Eucalyptus grandis HOM05D004629 ORTHO05D006604 0.0e+00 1149.8 636 89.5
Solyc01g006280.3 Solanum lycopersicum HOM05D004629 ORTHO05D006604 0.0e+00 1149.8 633 90.5
PGR119G2006 Punica granatum HOM05D004629 ORTHO05D006604 0.0e+00 1148.7 634 89.7
Sc09g0000300 Simmondsia chinensis HOM05D004629 ORTHO05D006604 0.0e+00 1146.3 637 89.6
PGSC0003DMG400032146 Solanum tuberosum HOM05D004629 ORTHO05D006604 0.0e+00 1146.0 633 89.9
ClCG03G013940 Citrullus lanatus HOM05D004629 ORTHO05D006604 0.0e+00 1145.6 637 89.6
Peaxi162Scf00192g00022 Petunia axillaris HOM05D004629 ORTHO05D006604 0.0e+00 1145.6 628 90.9
DCAR_024372 Daucus carota HOM05D004629 ORTHO05D006604 0.0e+00 1144.8 631 89.5
PSO384G3664 Papaver somniferum HOM05D004629 ORTHO05D006604 0.0e+00 1144.8 637 88.5
PSO339G6259 Papaver somniferum HOM05D004629 ORTHO05D006604 0.0e+00 1143.3 637 88.4
Medtr5g059390 Medicago truncatula HOM05D004629 ORTHO05D006604 0.0e+00 1142.9 636 90.1
CARHR040480 Cardamine hirsuta HOM05D004629 ORTHO05D006604 0.0e+00 1142.5 637 88.5
HanXRQChr07g0196791 Helianthus annuus HOM05D004629 ORTHO05D006604 0.0e+00 1141.3 632 89.4
THA.LOC104806618 Tarenaya hassleriana HOM05D004629 ORTHO05D006604 0.0e+00 1140.9 637 88.9
Thhalv10011315m.g Eutrema salsugineum HOM05D004629 ORTHO05D006604 0.0e+00 1139.0 637 87.9
AL1G58130 Arabidopsis lyrata HOM05D004629 ORTHO05D006604 0.0e+00 1137.9 637 87.9
AT1G50480 Arabidopsis thaliana HOM05D004629 ORTHO05D006604 0.0e+00 1137.9 634 87.7
Sp1g37320 Schrenkiella parvula HOM05D004629 ORTHO05D006604 0.0e+00 1136.7 630 88.6
ECA238G3810 Erigeron canadensis HOM05D004629 ORTHO05D006604 0.0e+00 1135.6 630 89.0
Migut.N02273 Erythranthe guttata HOM05D004629 ORTHO05D006604 0.0e+00 1133.6 633 88.8
Lsat_1_v5_gn_2_101421 Lactuca sativa HOM05D004629 ORTHO05D006604 0.0e+00 1133.6 630 88.9
Aqoxy2G00099 Aquilegia oxysepala HOM05D004629 ORTHO05D006604 0.0e+00 1133.2 636 88.4
Carub.0001s3955 Capsella rubella HOM05D004629 ORTHO05D006604 0.0e+00 1132.9 635 87.6
BcaB07g33484 Brassica carinata HOM05D004629 ORTHO05D006604 0.0e+00 1132.1 637 87.6
Aa31LG10G3810 Aethionema arabicum HOM05D004629 ORTHO05D006604 0.0e+00 1130.2 637 87.6
BcaC08g43218 Brassica carinata HOM05D004629 ORTHO05D006604 0.0e+00 1128.2 637 87.3
C06p05660 Brassica napus HOM05D004629 ORTHO05D006604 0.0e+00 1128.2 637 87.3
BolC6t35677H Brassica oleracea HOM05D004629 ORTHO05D006604 0.0e+00 1128.2 637 87.3
BraA06t23523Z Brassica rapa HOM05D004629 ORTHO05D006604 0.0e+00 1128.2 637 87.3
A06p03100 Brassica napus HOM05D004629 ORTHO05D006604 0.0e+00 1125.9 637 87.1
CSS0018441 Camellia sinensis var. sinensis HOM05D004629 ORTHO05D006604 0.0e+00 1124.8 637 88.5
BolC5t32091H Brassica oleracea HOM05D004629 ORTHO05D006604 0.0e+00 1122.8 637 86.0
BraA05t20921Z Brassica rapa HOM05D004629 ORTHO05D006604 0.0e+00 1122.8 632 86.6
Os09g0446800 Oryza sativa ssp. japonica HOM05D004629 ORTHO05D006604 0.0e+00 1121.3 634 86.9
CAN.G140.2 Capsicum annuum HOM05D004629 ORTHO05D006604 0.0e+00 1120.5 633 88.5
ATR0598G234 Amborella trichopoda HOM05D004629 ORTHO05D006604 0.0e+00 1120.1 637 87.3
BcaB02g11151 Brassica carinata HOM05D004629 ORTHO05D006604 0.0e+00 1119.8 637 86.3
Zm00001eb314490 Zea mays HOM05D004629 ORTHO05D006604 0.0e+00 1119.8 634 86.4
A05p20130 Brassica napus HOM05D004629 ORTHO05D006604 0.0e+00 1119.0 632 86.1
HPP92_005763 Vanilla planifolia HOM05D004629 ORTHO05D006604 0.0e+00 1119.0 637 87.3
TAR369G0186 Trochodendron aralioides HOM05D004629 ORTHO05D006604 0.0e+00 1118.6 632 88.8
BcaC05g27413 Brassica carinata HOM05D004629 ORTHO05D006604 0.0e+00 1116.3 637 85.7
C05p33610 Brassica napus HOM05D004629 ORTHO05D006604 0.0e+00 1090.9 637 84.1
ECA248G3511 Erigeron canadensis HOM05D004629 ORTHO05D006604 0.0e+00 1078.9 628 84.6
HanXRQChr11g0344961 Helianthus annuus HOM05D004629 ORTHO05D006604 0.0e+00 1078.9 628 84.4
Ciclev10014598m.g Citrus clementina HOM05D004629 ORTHO05D006604 0.0e+00 1077.4 647 84.1
Lsat_1_v5_gn_1_68420 Lactuca sativa HOM05D004629 ORTHO05D006604 4.4e-312 1074.3 628 83.6
Nitab4.5_0008074g0010 Nicotiana tabacum HOM05D004629 ORTHO05D006604 2.8e-309 1064.7 582 90.4
Pp3c15_21130 Physcomitrium patens HOM05D004629 ORTHO05D006604 9.3e-305 1049.7 631 81.6
Mapoly0009s0223 Marchantia polymorpha HOM05D004629 ORTHO05D006604 5.8e-291 1003.8 631 78.6
Nn7g35984 Nelumbo nucifera HOM05D004629 ORTHO05D006604 1.2e-288 996.1 541 91.5
AUR62019209 Chenopodium quinoa HOM05D004629 ORTHO05D006604 1.3e-285 986.1 534 91.4
Lj2A677T24 Lonicera japonica HOM05D004629 ORTHO05D006604 9.0e-284 979.9 534 90.6
CBR_g29353 Chara braunii HOM05D004629 ORTHO05D006604 5.0e-274 947.6 648 73.9
Psat6g238880 Pisum sativum HOM05D004629 ORTHO05D006604 1.4e-273 946.0 635 76.7
Cre13.g566000 Chlamydomonas reinhardtii HOM05D004629 ORTHO05D006604 2.9e-266 921.8 629 73.3
FvH4_3g44470 Fragaria vesca HOM05D004629 ORTHO05D006604 6.5e-266 920.6 499 91.2
SMO364G0493 Selaginella moellendorffii HOM05D004629 ORTHO05D006604 6.1e-264 914.1 649 72.1
Oeu046515.2 Olea europaea HOM05D004629 ORTHO05D006604 1.5e-246 856.3 634 72.7
Cfa009637 Carpinus fangiana HOM05D004629 ORTHO05D006604 1.3e-245 853.2 503 85.9
vmacro16237 Vaccinium macrocarpon HOM05D004629 ORTHO05D006604 1.3e-245 853.2 503 85.5
GSVIVG01025376001 Vitis vinifera HOM05D004629 ORTHO05D006604 6.3e-237 824.3 636 69.8
MCO09G252 Micromonas commoda HOM05D004629 ORTHO05D006604 1.4e-236 823.2 638 66.0
AagrBONN_evm.TU.Sc2ySwM_117.3293 Anthoceros agrestis HOM05D004629 ORTHO05D006604 4.1e-236 821.6 497 81.9
Cfa022255 Carpinus fangiana HOM05D004629 ORTHO05D006604 1.4e-228 796.6 638 62.9
unitig_22.g5473 Utricularia gibba HOM05D004629 ORTHO05D006604 8.1e-200 701.0 444 79.7
CDE05G3086 Ceratophyllum demersum HOM05D004629 ORTHO05D006604 6.9e-199 698.0 533 70.2
Haze_26090 Corylus avellana HOM05D004629 ORTHO05D006604 1.3e-184 650.6 643 53.7
CDE05G1958 Ceratophyllum demersum HOM05D004629 ORTHO05D006604 3.9e-178 629.0 446 74.4
CDE05G1726 Ceratophyllum demersum HOM05D004629 ORTHO05D006604 4.5e-174 615.5 354 87.6
CDE05G0953 Ceratophyllum demersum HOM05D004629 ORTHO05D006604 7.4e-169 598.2 411 75.4
Cpa.g.sc119.97 Carica papaya HOM05D004629 ORTHO05D006604 6.7e-162 575.1 315 90.5
Glyma.10G112700 Glycine max HOM05D004629 ORTHO05D006604 4.7e-155 552.4 293 93.9
BcaB02g11149 Brassica carinata HOM05D004629 ORTHO05D006604 4.2e-140 502.7 278 89.6
PRCOL_00001239 Prasinoderma coloniale HOM05D004629 ORTHO05D006604 1.2e-115 421.4 527 43.8
Actinidia39366 Actinidia chinensis HOM05D004629 ORTHO05D006604 1.7e-101 374.4 201 91.5
CDE05G1698 Ceratophyllum demersum HOM05D004635 ORTHO05D005899 6.6e-93 345.9 240 72.9
Aqoxy5G02405 Aquilegia oxysepala HOM05D004629 ORTHO05D006604 9.3e-87 325.5 184 87.5
CDE05G0143 Ceratophyllum demersum HOM05D004629 ORTHO05D019743 5.3e-82 309.7 231 70.1
Psat2g086520 Pisum sativum HOM05D004629 ORTHO05D006604 1.7e-80 304.7 163 90.8
DCAR_017261 Daucus carota HOM05D004629 ORTHO05D006604 1.6e-75 288.1 163 86.5
Nn2g15715 Nelumbo nucifera HOM05D004629 ORTHO05D019743 1.9e-71 274.6 637 33.6
Psat2g086560 Pisum sativum HOM05D004629 ORTHO05D002382 3.9e-61 240.4 273 51.3
Sabra01G0008400 Salix brachista HOM05D004629 ORTHO05D023587 9.3e-55 219.2 230 56.5
Lj2A677G23 Lonicera japonica HOM05D004629 ORTHO05D006604 5.5e-47 193.4 104 91.3
Aqoxy3G01857 Aquilegia oxysepala HOM05D004629 ORTHO05D006604 8.2e-43 179.5 104 83.7
Psat3g007720 Pisum sativum HOM05D004629 ORTHO05D006604 2.4e-42 177.9 99 88.9
Psat1g079640 Pisum sativum HOM05D004629 ORTHO05D023587 7.7e-41 172.9 104 79.8
Thecc.10G098800 Theobroma cacao HOM05D004629 ORTHO05D006604 1.7e-40 171.8 160 62.5
Aqoxy5G02400 Aquilegia oxysepala HOM05D004629 ORTHO05D023587 3.9e-37 160.6 90 88.9
unitig_22.g5472 Utricularia gibba HOM05D004629 ORTHO05D006604 4.8e-35 153.7 125 64.8
Nn7g35985 Nelumbo nucifera HOM05D004629 ORTHO05D019743 3.1e-34 151.0 86 80.2
Psat4g081680 Pisum sativum HOM05D004629 ORTHO05D019743 1.6e-33 148.7 91 82.4
Psat4g081640 Pisum sativum HOM05D004629 ORTHO05D019743 2.6e-33 147.9 91 81.3
AT2G12280 Arabidopsis thaliana HOM05D004629 ORTHO05D019743 3.6e-30 137.5 74 83.8
Haze_27099 Corylus avellana HOM05D004629 ORTHO05D006604 2.3e-21 108.2 116 51.7
Psat4g161960 Pisum sativum HOM05D001026 ORTHO05D007776 2.2e-19 101.7 60 81.7
BcaB02g11150 Brassica carinata HOM05D004629 ORTHO05D092705 4.8e-19 100.5 53 88.7
CAN.G8813.1 Capsicum annuum HOM05D004629 ORTHO05D006604 2.4e-18 98.2 70 68.6
DCAR_026904 Daucus carota HOM05D004629 ORTHO05D023587 3.5e-17 94.4 51 86.3
Nn1g06900 Nelumbo nucifera HOM05D004629 ORTHO05D023587 5.0e-16 90.5 49 85.7
AT2G12200 Arabidopsis thaliana HOM05D004629 ORTHO05D019743 1.9e-15 88.6 63 65.1
Aqoxy2G02051 Aquilegia oxysepala HOM05D004629 ORTHO05D004559 8.8e-13 79.7 56 64.3
ECA248G2032 Erigeron canadensis HOM05D004629 ORTHO05D189049 3.5e-09 67.8 43 74.4


User provided reference genes

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