Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.MB2RBZ Arachis hypogaea HOM05D005421 ORTHO05D007601 1.4e-218 763.1 531 100.0
arahy.Tifrunner.gnm1.ann1.1MC3I0 Arachis hypogaea HOM05D005421 ORTHO05D007601 2.9e-182 642.5 531 91.0
Glyma.10G149900 Glycine max HOM05D005421 ORTHO05D007601 2.7e-100 370.2 531 61.2
Glyma.20G238500 Glycine max HOM05D005421 ORTHO05D007601 6.1e-100 369.0 531 61.4
Phvul.007G199400 Phaseolus vulgaris HOM05D005421 ORTHO05D007601 1.1e-98 364.8 545 58.9
VMungo0720G1843 Vigna mungo HOM05D005421 ORTHO05D007601 1.5e-98 364.4 531 63.8
Psat6g151720 Pisum sativum HOM05D005421 ORTHO05D007601 1.1e-96 358.2 531 60.3
Ca_10154_v3 Cicer arietinum L. HOM05D005421 ORTHO05D007601 1.6e-95 354.4 529 60.7
Ca_29832_v3 Cicer arietinum L. HOM05D005421 ORTHO05D007601 1.6e-95 354.4 529 60.7
Lj5g0011296 Lotus japonicus HOM05D005421 ORTHO05D007601 5.9e-95 352.4 529 60.3
Lalb_Chr02g0148011 Lupinus albus HOM05D005421 ORTHO05D007601 1.5e-93 347.8 531 58.2
Lalb_Chr21g0310441 Lupinus albus HOM05D005421 ORTHO05D007601 1.9e-93 347.4 531 61.8
Medtr1g083720 Medicago truncatula HOM05D005421 ORTHO05D007601 4.7e-92 342.8 535 60.6
TAR636G1951 Trochodendron aralioides HOM05D005421 ORTHO05D007601 4.1e-88 329.7 533 57.2
QL03p018920 Quercus lobata HOM05D005421 ORTHO05D007601 5.3e-88 329.3 540 57.0
Actinidia35540 Actinidia chinensis HOM05D005421 ORTHO05D007601 7.0e-88 328.9 532 57.3
CSS0046729 Camellia sinensis var. sinensis HOM05D005421 ORTHO05D007601 1.3e-86 324.7 533 55.9
CiPaw.07G025400 Carya illinoinensis HOM05D005421 ORTHO05D007601 1.3e-86 324.7 530 57.0
vmacro01533 Vaccinium macrocarpon HOM05D005421 ORTHO05D007601 2.2e-86 323.9 219 75.3
FAN05G0688 Fragaria x ananassa HOM05D005421 ORTHO05D007601 2.9e-86 323.6 546 56.2
Rhsim11G0092200 Rhododendron simsii HOM05D005421 ORTHO05D007601 3.8e-86 323.2 538 57.4
CSS0007056 Camellia sinensis var. sinensis HOM05D005421 ORTHO05D007601 6.5e-86 322.4 533 56.1
RcHm_v2.0_Chr3g0456541 Rosa chinensis HOM05D005421 ORTHO05D007601 1.5e-85 321.2 534 55.8
ClCG02G015170 Citrullus lanatus HOM05D005421 ORTHO05D007601 1.9e-85 320.9 200 81.0
CsaV3_2G006840 Cucumis sativus L. HOM05D005421 ORTHO05D007601 1.9e-85 320.9 200 81.0
MELO3C004206.2 Cucumis melo HOM05D005421 ORTHO05D007601 3.2e-85 320.1 200 81.0
Manes.13G000084 Manihot esculenta HOM05D005421 ORTHO05D007601 4.2e-85 319.7 200 79.5
Oeu045895.1 Olea europaea HOM05D005421 ORTHO05D007601 5.5e-85 319.3 533 49.3
Solyc01g100060.4 Solanum lycopersicum HOM05D005421 ORTHO05D007601 5.5e-85 319.3 543 56.0
Sed0018701 Sechium edule HOM05D005421 ORTHO05D007601 1.6e-84 317.8 200 80.0
HanXRQChr01g0011821 Helianthus annuus HOM05D005421 ORTHO05D007601 2.7e-84 317.0 202 77.7
Sopen01g043590 Solanum pennellii HOM05D005421 ORTHO05D007601 2.7e-84 317.0 559 54.6
Cfa006671 Carpinus fangiana HOM05D005421 ORTHO05D007601 4.7e-84 316.2 200 78.5
FvH4_6g07010 Fragaria vesca HOM05D005421 ORTHO05D007601 4.7e-84 316.2 534 55.8
MBI18_g04564_MAGBIO Magnolia biondii HOM05D005421 ORTHO05D007601 4.7e-84 316.2 532 55.8
Eucgr.H03270 Eucalyptus grandis HOM05D005421 ORTHO05D007601 6.1e-84 315.8 533 57.2
FAN02G3486 Fragaria x ananassa HOM05D005421 ORTHO05D007601 6.1e-84 315.8 537 53.8
FAN14G1909 Fragaria x ananassa HOM05D005421 ORTHO05D007601 1.0e-83 315.1 534 54.9
Nitab4.5_0001971g0070 Nicotiana tabacum HOM05D005421 ORTHO05D007601 1.0e-83 315.1 541 55.3
Haze_04100 Corylus avellana HOM05D005421 ORTHO05D007601 1.4e-83 314.7 567 54.9
Nitab4.5_0002612g0040 Nicotiana tabacum HOM05D005421 ORTHO05D007601 1.4e-83 314.7 543 55.1
Lsat_1_v5_gn_7_73220 Lactuca sativa HOM05D005421 ORTHO05D007601 1.8e-83 314.3 202 76.2
Atru.chr2.115 Acer truncatum HOM05D005421 ORTHO05D007601 3.0e-83 313.5 202 76.7
Ciclev10001489m.g Citrus clementina HOM05D005421 ORTHO05D007601 4.0e-83 313.2 200 77.0
Peaxi162Scf00037g01816 Petunia axillaris HOM05D005421 ORTHO05D007601 4.0e-83 313.2 200 77.0
Prupe.1G236900 Prunus persica HOM05D005421 ORTHO05D007601 4.0e-83 313.2 537 54.9
Potri.013G012000 Populus trichocarpa HOM05D005421 ORTHO05D007601 5.2e-83 312.8 200 76.5
Sabra13G0010600 Salix brachista HOM05D005421 ORTHO05D007601 5.2e-83 312.8 200 76.5
Thecc.06G040900 Theobroma cacao HOM05D005421 ORTHO05D007601 1.2e-82 311.6 200 76.0
Aqoxy2G02863 Aquilegia oxysepala HOM05D005421 ORTHO05D007601 1.5e-82 311.2 200 77.0
PGSC0003DMG400024728 Solanum tuberosum HOM05D005421 ORTHO05D007601 1.5e-82 311.2 208 74.0
GSVIVG01031188001 Vitis vinifera HOM05D005421 ORTHO05D007601 2.0e-82 310.8 200 76.0
MD04G1196900 Malus domestica HOM05D005421 ORTHO05D007601 2.6e-82 310.5 200 76.0
ECA236G4663 Erigeron canadensis HOM05D005421 ORTHO05D007601 3.4e-82 310.1 202 75.2
THA.LOC104820733 Tarenaya hassleriana HOM05D005421 ORTHO05D007601 3.4e-82 310.1 207 73.4
MD12G1209800 Malus domestica HOM05D005421 ORTHO05D007601 4.4e-82 309.7 200 75.5
CAN.G1273.26 Capsicum annuum HOM05D005421 ORTHO05D007601 5.7e-82 309.3 208 73.6
Dinv30846 Davidia involucrata HOM05D005421 ORTHO05D007601 5.7e-82 309.3 200 76.5
PSO170G1114 Papaver somniferum HOM05D005421 ORTHO05D007601 7.5e-82 308.9 200 75.5
PSO407G0035 Papaver somniferum HOM05D005421 ORTHO05D007601 7.5e-82 308.9 200 75.5
DCAR_004503 Daucus carota HOM05D005421 ORTHO05D007601 9.8e-82 308.5 200 75.5
CANSAT54G2596 Cannabis sativa HOM05D005421 ORTHO05D007601 1.7e-81 307.8 533 58.2
CDE02G0330 Ceratophyllum demersum HOM05D005421 ORTHO05D007601 1.7e-81 307.8 200 75.5
TWI12G1149 Tripterygium wilfordii HOM05D005421 ORTHO05D007601 1.7e-81 307.8 207 72.5
PGR031G1007 Punica granatum HOM05D005421 ORTHO05D007601 2.2e-81 307.4 535 57.6
Gohir.A10G155100 Gossypium hirsutum HOM05D005421 ORTHO05D007601 2.8e-81 307.0 200 75.5
THA.LOC104805907 Tarenaya hassleriana HOM05D005421 ORTHO05D007601 3.7e-81 306.6 207 73.4
Hund07118 Selenicereus undatus HOM05D005421 ORTHO05D007601 4.8e-81 306.2 200 76.5
Aa31LG3G1470 Aethionema arabicum HOM05D005421 ORTHO05D007601 6.3e-81 305.8 206 71.4
Migut.B01005 Erythranthe guttata HOM05D005421 ORTHO05D007601 6.3e-81 305.8 200 76.5
SGA_v2.0_scaffold4G01947 Striga asiatica HOM05D005421 ORTHO05D007601 1.8e-80 304.3 529 51.2
CARHR135760 Cardamine hirsuta HOM05D005421 ORTHO05D007601 3.1e-80 303.5 200 73.0
Gohir.D10G110800 Gossypium hirsutum HOM05D005421 ORTHO05D007601 3.1e-80 303.5 536 52.8
Gorai.011G122100 Gossypium raimondii HOM05D005421 ORTHO05D007601 3.1e-80 303.5 536 52.8
Cpa.g.sc48.125 Carica papaya HOM05D005421 ORTHO05D007601 4.1e-80 303.1 544 54.8
Cc02_g34540 Coffea canephora HOM05D005421 ORTHO05D007601 4.1e-80 303.1 200 75.0
AL4G38520 Arabidopsis lyrata HOM05D005421 ORTHO05D007601 5.4e-80 302.8 200 73.0
EL10Ac4g09870 Beta vulgaris HOM05D005421 ORTHO05D007601 7.0e-80 302.4 200 74.5
AUR62005243 Chenopodium quinoa HOM05D005421 ORTHO05D007601 7.0e-80 302.4 200 74.0
AUR62000721 Chenopodium quinoa HOM05D005421 ORTHO05D007601 9.1e-80 302.0 201 73.6
Sp4g22980 Schrenkiella parvula HOM05D005421 ORTHO05D007601 9.1e-80 302.0 200 72.5
Ah.04g161240 Amaranthus hybridus HOM05D005421 ORTHO05D007601 1.2e-79 301.6 200 74.0
SalBow1G5723 Salvia bowleyana HOM05D005421 ORTHO05D007601 1.2e-79 301.6 200 75.5
COL.COLO4_07356 Corchorus olitorius HOM05D005421 ORTHO05D007601 1.6e-79 301.2 201 73.1
BcaB01g03524 Brassica carinata HOM05D005421 ORTHO05D007601 2.0e-79 300.8 200 72.0
Carub.0004s2294 Capsella rubella HOM05D005421 ORTHO05D007601 2.0e-79 300.8 200 72.5
AT2G40650 Arabidopsis thaliana HOM05D005421 ORTHO05D007601 2.7e-79 300.4 200 72.0
TWI56G0052 Tripterygium wilfordii HOM05D005421 ORTHO05D007601 3.5e-79 300.1 225 67.1
HPP92_020212 Vanilla planifolia HOM05D005421 ORTHO05D007601 3.5e-79 300.1 200 74.0
HPP92_020232 Vanilla planifolia HOM05D005421 ORTHO05D007601 3.5e-79 300.1 200 74.0
BcaC01g05387 Brassica carinata HOM05D005421 ORTHO05D007601 7.7e-79 298.9 200 71.5
A03p22860 Brassica napus HOM05D005421 ORTHO05D007601 7.7e-79 298.9 200 71.5
C03p27110 Brassica napus HOM05D005421 ORTHO05D007601 7.7e-79 298.9 200 71.5
BolC3t15092H Brassica oleracea HOM05D005421 ORTHO05D007601 7.7e-79 298.9 200 71.5
BraA03t11510Z Brassica rapa HOM05D005421 ORTHO05D007601 7.7e-79 298.9 200 71.5
Sc16g0008670 Simmondsia chinensis HOM05D005421 ORTHO05D007601 1.0e-78 298.5 200 73.0
BcaC02g07328 Brassica carinata HOM05D005421 ORTHO05D007601 1.7e-78 297.7 200 72.5
Duzib150G0691 Durio zibethinus HOM05D005421 ORTHO05D007601 2.9e-78 297.0 533 55.5
A04p31080 Brassica napus HOM05D005421 ORTHO05D007601 1.5e-77 294.7 200 71.5
Zm00001eb095730 Zea mays HOM05D005421 ORTHO05D007601 1.9e-77 294.3 200 71.5
Os09g0103600 Oryza sativa ssp. japonica HOM05D005421 ORTHO05D007601 1.6e-76 291.2 200 71.0
C04p68470 Brassica napus HOM05D005421 ORTHO05D007601 2.1e-76 290.8 207 70.0
Mapoly0138s0022 Marchantia polymorpha HOM05D005421 ORTHO05D007601 4.7e-76 289.7 200 71.5
Nitab4.5_0003248g0020 Nicotiana tabacum HOM05D005421 ORTHO05D007601 1.4e-75 288.1 200 70.5
AagrBONN_evm.TU.Sc2ySwM_117.208 Anthoceros agrestis HOM05D005421 ORTHO05D007601 6.8e-75 285.8 200 70.0
BcaB06g29166 Brassica carinata HOM05D005421 ORTHO05D007601 2.0e-74 284.3 199 70.4
CBR_g27792 Chara braunii HOM05D005421 ORTHO05D007601 5.7e-74 282.7 200 69.5
BolC4t28347H Brassica oleracea HOM05D005421 ORTHO05D007601 7.5e-74 282.3 229 63.3
BraA04t18563Z Brassica rapa HOM05D005421 ORTHO05D007601 7.5e-74 282.3 221 64.7
COL.COLO4_26689 Corchorus olitorius HOM05D005421 ORTHO05D007601 3.7e-73 280.0 550 39.5
Pp3c1_35390 Physcomitrium patens HOM05D005421 ORTHO05D007601 3.7e-73 280.0 200 70.0
SMO361G0640 Selaginella moellendorffii HOM05D005421 ORTHO05D007601 2.7e-71 273.9 203 67.5
Dinv24409 Davidia involucrata HOM05D005421 ORTHO05D007601 7.8e-71 272.3 539 52.5
TWI38G1969 Tripterygium wilfordii HOM05D005421 ORTHO05D007601 1.4e-64 251.5 533 37.3
FAN09G4258 Fragaria x ananassa HOM05D000389 ORTHO05D000287 3.9e-62 243.4 515 51.7
Nn4g25707 Nelumbo nucifera HOM05D005421 ORTHO05D007601 1.6e-60 238.0 200 64.5
Cre12.g503400 Chlamydomonas reinhardtii HOM05D005421 ORTHO05D007601 2.0e-58 231.1 198 55.6
Peaxi162Scf00404g00814 Petunia axillaris HOM05D005421 ORTHO05D007601 4.1e-56 223.4 195 60.0
MCO01G394 Micromonas commoda HOM05D005421 ORTHO05D007601 2.9e-49 200.7 200 51.0
Lj9C202T10 Lonicera japonica HOM05D005421 ORTHO05D007601 2.1e-47 194.5 97 92.8
Haze_27467 Corylus avellana HOM05D005421 ORTHO05D007601 3.9e-46 190.3 220 44.5
SEGI_13779 Sequoiadendron giganteum HOM05D005421 ORTHO05D007601 2.6e-42 177.6 94 87.2
PRCOL_00004539 Prasinoderma coloniale HOM05D005421 ORTHO05D007601 3.8e-41 173.7 204 46.1
Potri.005G021600 Populus trichocarpa HOM05D005421 ORTHO05D007601 1.1e-35 155.6 86 84.9
Lj9A202T65 Lonicera japonica HOM05D005421 ORTHO05D007601 3.2e-24 117.5 104 58.7
Prupe.6G317400 Prunus persica HOM05D005421 ORTHO05D007601 2.1e-23 114.8 105 56.2
SEGI_07889 Sequoiadendron giganteum HOM05D005421 ORTHO05D007601 4.3e-21 107.1 122 49.2
ATR0469G001 Amborella trichopoda HOM05D005421 ORTHO05D007601 2.0e-18 98.2 103 52.4
ATR1164G001 Amborella trichopoda HOM05D005421 ORTHO05D007601 2.0e-18 98.2 103 52.4
RcHm_v2.0_Chr7g0209371 Rosa chinensis HOM05D005421 ORTHO05D007601 1.3e-12 79.0 53 60.4
BcaB06g27834 Brassica carinata HOM05D005421 ORTHO05D031867 1.5e-10 72.0 90 46.7
TAR362G1077 Trochodendron aralioides HOM05D005421 ORTHO05D026565 3.5e-07 60.8 32 81.2
Dinv05263 Davidia involucrata HOM05D002902 ORTHO05D008934 1.8e-06 58.5 31 83.9


User provided reference genes

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