Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.M9LRNQ Arachis hypogaea HOM05D004493 ORTHO05D005117 0.0e+00 3139.7 1742 100.0
arahy.Tifrunner.gnm1.ann1.578M4A Arachis hypogaea HOM05D004493 ORTHO05D005117 0.0e+00 1724.1 926 95.9
Glyma.18G007300 Glycine max HOM05D004493 ORTHO05D005117 0.0e+00 1656.0 1669 60.0
Glyma.06G239100 Glycine max HOM05D004493 ORTHO05D005117 0.0e+00 1651.3 1663 60.4
Lalb_Chr13g0295751 Lupinus albus HOM05D004493 ORTHO05D005117 0.0e+00 1631.3 1778 60.9
Phvul.007G078700 Phaseolus vulgaris HOM05D004493 ORTHO05D005117 0.0e+00 1602.4 1799 59.4
Lj5g0011313 Lotus japonicus HOM05D004493 ORTHO05D005117 0.0e+00 1525.8 1653 58.1
Psat6g065800 Pisum sativum HOM05D004493 ORTHO05D005117 0.0e+00 1500.7 1650 56.5
TPR.G22583 Trifolium pratense HOM05D004493 ORTHO05D005117 0.0e+00 1493.8 1661 56.5
Medtr1g069005 Medicago truncatula HOM05D004493 ORTHO05D005117 0.0e+00 1489.6 1723 54.2
Ca_09617_v3 Cicer arietinum L. HOM05D004493 ORTHO05D005117 0.0e+00 1408.3 1678 54.3
VMungo0720G0327 Vigna mungo HOM05D004493 ORTHO05D005117 0.0e+00 1168.7 1428 53.2
QL01p007857 Quercus lobata HOM05D004493 ORTHO05D005117 0.0e+00 1095.5 1727 44.4
Haze_22920 Corylus avellana HOM05D004493 ORTHO05D005117 2.4e-311 1073.2 1741 44.2
Cfa009530 Carpinus fangiana HOM05D004493 ORTHO05D005117 5.1e-305 1052.0 1708 43.8
Dinv06245 Davidia involucrata HOM05D004493 ORTHO05D005117 2.2e-292 1010.0 1721 42.8
Dinv15519 Davidia involucrata HOM05D004493 ORTHO05D005117 2.2e-292 1010.0 1721 42.8
Prupe.6G001200 Prunus persica HOM05D004493 ORTHO05D005117 3.6e-290 1002.7 1745 41.5
CiPaw.13G180100 Carya illinoinensis HOM05D004493 ORTHO05D005117 1.8e-289 1000.3 1715 42.7
TAR623G0338 Trochodendron aralioides HOM05D004493 ORTHO05D005117 4.2e-283 979.2 1779 40.9
Ciclev10014017m.g Citrus clementina HOM05D004493 ORTHO05D005117 2.8e-279 966.5 1722 41.3
Thecc.09G205800 Theobroma cacao HOM05D004493 ORTHO05D005117 1.1e-275 954.5 1767 41.1
FvH4_3g45960 Fragaria vesca HOM05D004493 ORTHO05D005117 6.7e-273 945.3 1805 43.4
Gohir.D08G092400 Gossypium hirsutum HOM05D004493 ORTHO05D005117 5.7e-272 942.2 1880 41.3
Gorai.004G097900 Gossypium raimondii HOM05D004493 ORTHO05D005117 7.5e-272 941.8 1879 41.6
RcHm_v2.0_Chr5g0084071 Rosa chinensis HOM05D004493 ORTHO05D005117 1.0e-268 931.4 1677 40.7
TWI34G1214 Tripterygium wilfordii HOM05D004493 ORTHO05D005117 8.5e-268 928.3 1693 40.2
MD11G1001000 Malus domestica HOM05D004493 ORTHO05D005117 5.5e-267 925.6 1741 40.4
GSVIVG01025508001 Vitis vinifera HOM05D004493 ORTHO05D005117 7.5e-264 915.2 1710 40.8
Potri.003G223400 Populus trichocarpa HOM05D004493 ORTHO05D005117 2.8e-263 913.3 1697 39.5
Nn7g36938 Nelumbo nucifera HOM05D004493 ORTHO05D005117 6.3e-263 912.1 1812 39.2
Atru.chr3.2057 Acer truncatum HOM05D004493 ORTHO05D005117 1.3e-260 904.4 1690 40.4
Duzib168G1306 Durio zibethinus HOM05D004493 ORTHO05D005117 5.0e-260 902.5 1889 41.1
FAN25G0645 Fragaria x ananassa HOM05D004493 ORTHO05D005117 2.5e-259 900.2 1688 39.9
Sabra03G0166000 Salix brachista HOM05D004493 ORTHO05D005117 3.3e-251 873.2 1725 39.1
CANSAT11G1563 Cannabis sativa HOM05D004493 ORTHO05D005117 1.4e-249 867.8 1845 37.0
CARHR045230 Cardamine hirsuta HOM05D004493 ORTHO05D005117 1.1e-241 841.6 1779 37.0
FAN21G4070 Fragaria x ananassa HOM05D004493 ORTHO05D005117 2.0e-240 837.4 1734 38.6
Rhsim10G0100200 Rhododendron simsii HOM05D004493 ORTHO05D005117 1.7e-239 834.3 1780 37.2
Manes.15G110800 Manihot esculenta HOM05D004493 ORTHO05D005117 2.2e-239 833.9 1765 37.3
THA.LOC104822690 Tarenaya hassleriana HOM05D004493 ORTHO05D005117 3.7e-239 833.2 1826 37.1
AL1G63570 Arabidopsis lyrata HOM05D004493 ORTHO05D005117 8.3e-239 832.0 1781 37.0
CsaV3_5G029430 Cucumis sativus L. HOM05D004493 ORTHO05D005117 6.6e-236 822.4 1679 38.8
PGR119G2408 Punica granatum HOM05D004493 ORTHO05D005117 5.6e-235 819.3 1721 37.7
Actinidia00919 Actinidia chinensis HOM05D004493 ORTHO05D005117 1.8e-233 814.3 1632 38.8
AT1G55540 Arabidopsis thaliana HOM05D004493 ORTHO05D005117 1.2e-232 811.6 1785 37.0
FAN16G3321 Fragaria x ananassa HOM05D004493 ORTHO05D005117 3.7e-231 806.6 1827 37.3
Aa31LG10G700 Aethionema arabicum HOM05D004493 ORTHO05D005117 1.4e-230 804.7 1742 36.7
PSO384G0423 Papaver somniferum HOM05D004493 ORTHO05D005117 2.4e-230 803.9 1706 37.2
Sp1g41160 Schrenkiella parvula HOM05D004493 ORTHO05D005117 5.4e-230 802.7 1727 37.3
Carub.0001s4405 Capsella rubella HOM05D004493 ORTHO05D005117 4.3e-227 793.1 1783 37.0
MBI04_g11451_MAGBIO Magnolia biondii HOM05D004493 ORTHO05D005117 1.2e-226 791.6 1851 35.6
Thhalv10011181m.g Eutrema salsugineum HOM05D004493 ORTHO05D005117 1.4e-225 788.1 1792 36.2
BcaC01g01535 Brassica carinata HOM05D004493 ORTHO05D005117 2.2e-223 780.8 1720 37.1
A08p00540 Brassica napus HOM05D004493 ORTHO05D005117 1.6e-221 774.6 1718 36.8
Migut.N00529 Erythranthe guttata HOM05D004493 ORTHO05D005117 3.5e-221 773.5 1634 36.9
Sed0013310 Sechium edule HOM05D004493 ORTHO05D005117 4.3e-219 766.5 1673 37.1
BolC3t21593H Brassica oleracea HOM05D004493 ORTHO05D005117 7.3e-219 765.8 1727 37.2
BraA08t32112Z Brassica rapa HOM05D004493 ORTHO05D005117 2.8e-218 763.8 1720 36.8
CAN.G215.14 Capsicum annuum HOM05D004493 ORTHO05D005117 2.4e-217 760.8 1694 36.9
Oeu023963.1 Olea europaea HOM05D004493 ORTHO05D005117 7.1e-214 749.2 1775 35.6
Rhsim13G0209100 Rhododendron simsii HOM05D004493 ORTHO05D005117 3.5e-213 746.9 2072 32.7
AUR62015878 Chenopodium quinoa HOM05D004493 ORTHO05D005117 2.3e-212 744.2 1833 37.4
Aqoxy1G00107 Aquilegia oxysepala HOM05D004493 ORTHO05D005117 9.0e-209 732.3 1734 35.7
Sopen02g010770 Solanum pennellii HOM05D004493 ORTHO05D005117 9.0e-209 732.3 1668 36.5
C03p92870 Brassica napus HOM05D004493 ORTHO05D005117 1.9e-203 714.5 1662 36.4
ClCG11G012960 Citrullus lanatus HOM05D004493 ORTHO05D005117 9.6e-203 712.2 1675 36.2
SGA_v2.0_scaffold6G03332 Striga asiatica HOM05D004493 ORTHO05D005117 1.2e-200 705.3 1661 34.7
DCAR_024091 Daucus carota HOM05D004493 ORTHO05D005117 3.8e-199 700.3 1730 34.7
QL01p007875 Quercus lobata HOM05D004493 ORTHO05D005117 6.4e-199 699.5 1306 40.6
Lsat_1_v5_gn_1_71321 Lactuca sativa HOM05D004493 ORTHO05D005117 4.2e-198 696.8 1667 35.0
ECA248G0177 Erigeron canadensis HOM05D004493 ORTHO05D000562 1.0e-196 692.2 1660 36.3
EL10Ac4g07695 Beta vulgaris HOM05D004493 ORTHO05D005117 1.8e-193 681.4 1712 34.3
Nitab4.5_0000890g0180 Nicotiana tabacum HOM05D004493 ORTHO05D005117 4.0e-193 680.2 1751 35.5
Eucgr.J01744 Eucalyptus grandis HOM05D004493 ORTHO05D005117 7.6e-192 676.0 1578 36.4
MELO3C011789.2 Cucumis melo HOM05D004493 ORTHO05D005117 1.0e-191 675.6 1151 40.0
Cc01_g00330 Coffea canephora HOM05D004493 ORTHO05D005117 5.5e-190 669.8 1711 33.7
AUR62020345 Chenopodium quinoa HOM05D004493 ORTHO05D005117 1.5e-184 651.7 1631 34.2
SalBow3G2955 Salvia bowleyana HOM05D004493 ORTHO05D005117 2.2e-178 631.3 1739 32.9
HPP92_014371 Vanilla planifolia HOM05D004493 ORTHO05D005117 7.0e-169 599.7 1614 32.4
ATR0068G024 Amborella trichopoda HOM05D004493 ORTHO05D005117 1.4e-156 558.9 1658 32.4
Zm00001eb331030 Zea mays HOM05D004493 ORTHO05D005117 8.8e-148 529.6 1771 31.2
FAN11G0901 Fragaria x ananassa HOM05D004493 ORTHO05D005117 2.3e-140 505.0 749 43.7
Hund28035 Selenicereus undatus HOM05D004493 ORTHO05D005117 1.2e-133 482.6 1422 31.8
Hund28037 Selenicereus undatus HOM05D004493 ORTHO05D005117 1.2e-133 482.6 1422 31.8
Sc06g0004140 Simmondsia chinensis HOM05D004493 ORTHO05D005117 1.4e-132 479.2 1425 32.6
Gohir.A08G083000 Gossypium hirsutum HOM05D004493 ORTHO05D005117 3.1e-132 478.0 1017 39.2
COL.COLO4_35068 Corchorus olitorius HOM05D004493 ORTHO05D005117 5.6e-118 430.6 898 37.0
Nitab4.5_0000075g0180 Nicotiana tabacum HOM05D004493 ORTHO05D005117 1.1e-113 416.4 798 38.0
Ah.06g182270 Amaranthus hybridus HOM05D004493 ORTHO05D005117 1.2e-109 402.9 434 48.6
FAN11G3847 Fragaria x ananassa HOM05D004493 ORTHO05D005117 1.5e-102 379.4 850 38.6
Lj2A889G19 Lonicera japonica HOM05D004493 ORTHO05D005117 1.3e-95 356.3 881 33.4
Nitab4.5_0000075g0170 Nicotiana tabacum HOM05D004493 ORTHO05D005117 1.8e-92 345.9 912 37.9
Cpa.g.sc119.15 Carica papaya HOM05D004493 ORTHO05D005117 1.2e-91 343.2 908 32.4
Ah.06g182280 Amaranthus hybridus HOM05D004493 ORTHO05D005117 5.8e-91 340.9 904 34.8
VMungo0720G2527 Vigna mungo HOM05D004493 ORTHO05D005117 4.2e-89 334.7 241 71.4
unitig_0.g1239 Utricularia gibba HOM05D004493 ORTHO05D005117 6.9e-84 317.4 1017 27.7
Peaxi162Scf00186g00168 Petunia axillaris HOM05D004493 ORTHO05D005117 4.9e-82 311.2 822 36.6
Eucgr.J01742 Eucalyptus grandis HOM05D004493 ORTHO05D005117 7.1e-73 280.8 476 37.4
CDE02G1557 Ceratophyllum demersum HOM05D004493 ORTHO05D005117 4.6e-72 278.1 966 32.9
AagrBONN_evm.TU.Sc2ySwM_117.2650 Anthoceros agrestis HOM05D004493 ORTHO05D005117 4.1e-68 265.0 1071 26.2
Mapoly0022s0121 Marchantia polymorpha HOM05D004493 ORTHO05D005117 2.0e-67 262.7 1655 25.1
Pp3c13_12950 Physcomitrium patens HOM05D004493 ORTHO05D005117 2.0e-67 262.7 1692 26.4
Solyc02g032480.3 Solanum lycopersicum HOM05D004493 ORTHO05D005117 9.4e-65 253.8 632 32.1
MSTRG.929 Avicennia marina HOM05D004493 ORTHO05D005117 8.8e-63 247.3 828 34.2
Peaxi162Scf00186g01612 Petunia axillaris HOM05D004493 ORTHO05D005117 6.3e-61 241.1 616 33.3
COL.COLO4_35067 Corchorus olitorius HOM05D004493 ORTHO05D005117 6.9e-60 237.7 259 51.4
QL01p007909 Quercus lobata HOM05D004453 ORTHO05D005375 2.5e-57 229.2 642 34.0
CDE02G2692 Ceratophyllum demersum HOM05D004493 ORTHO05D005117 7.2e-57 227.6 236 49.6
Solyc02g032380.3 Solanum lycopersicum HOM05D004493 ORTHO05D005117 1.4e-55 223.4 285 46.7
Hma1.2p1_0589F.1_g184760 Hydrangea macrophylla HOM05D004493 ORTHO05D005117 8.2e-53 214.2 193 57.5
Hund05058 Selenicereus undatus HOM05D004493 ORTHO05D005117 9.1e-52 210.7 236 47.5
Eucgr.J01832 Eucalyptus grandis HOM05D004493 ORTHO05D005117 8.0e-48 197.6 146 61.0
Hma1.2p1_0589F.1_g184740 Hydrangea macrophylla HOM05D004493 ORTHO05D005117 2.0e-46 193.0 167 62.3
Solyc02g032490.3 Solanum lycopersicum HOM05D004493 ORTHO05D005117 2.2e-45 189.5 189 53.4
Dinv13491 Davidia involucrata HOM05D004493 ORTHO05D005117 1.2e-43 183.7 655 34.0
BcaNung06979 Brassica carinata HOM05D004493 ORTHO05D005117 2.0e-43 183.0 188 50.0
Potri.001G001201 Populus trichocarpa HOM05D004493 ORTHO05D005117 2.5e-41 176.0 234 47.9
vmacro09616 Vaccinium macrocarpon HOM05D004493 ORTHO05D005117 2.7e-40 172.6 650 34.0
QL01p007891 Quercus lobata HOM05D004493 ORTHO05D005117 5.2e-39 168.3 282 44.0
SEGI_27502 Sequoiadendron giganteum HOM05D004493 ORTHO05D005117 1.4e-36 160.2 995 28.5
CSS0040729 Camellia sinensis var. sinensis HOM05D004493 ORTHO05D005117 1.9e-33 149.8 139 57.6
Peaxi162Scf00186g01613 Petunia axillaris HOM05D004493 ORTHO05D005117 2.1e-32 146.4 187 44.9
MSTRG.12812 Avicennia marina HOM05D004493 ORTHO05D005117 3.6e-32 145.6 138 52.9
CSS0001625 Camellia sinensis var. sinensis HOM05D004493 ORTHO05D005117 7.7e-27 127.9 89 62.9
ATR0906G002 Amborella trichopoda HOM05D004493 ORTHO05D005117 1.1e-25 124.0 181 38.7
Hma1.2p1_0589F.1_g184750 Hydrangea macrophylla HOM05D004493 ORTHO05D005117 6.1e-24 118.2 474 30.0
Zm00001eb202920 Zea mays HOM05D004493 ORTHO05D005117 6.1e-24 118.2 121 46.3
FAN03G1805 Fragaria x ananassa HOM05D004493 ORTHO05D005117 1.2e-22 114.0 221 35.7
Lj2A889T20 Lonicera japonica HOM05D004493 ORTHO05D005117 2.9e-21 109.4 622 29.6
Solyc02g032450.3 Solanum lycopersicum HOM05D004493 ORTHO05D005117 8.3e-21 107.8 685 28.5
Cpa.g.sc119.16 Carica papaya HOM05D004493 ORTHO05D005117 5.4e-20 105.1 80 65.0
ATR0906G001 Amborella trichopoda HOM05D004493 ORTHO05D005117 5.0e-18 98.6 878 24.7
SMO167G0064 Selaginella moellendorffii HOM05D004493 ORTHO05D005117 6.2e-16 91.7 416 25.5
SEGI_28014 Sequoiadendron giganteum HOM05D004493 ORTHO05D005117 1.0e-15 90.9 104 39.4
Zm00001eb135660 Zea mays HOM05D004674 ORTHO05D007261 3.1e-15 89.4 68 58.8
SEGI_11629 Sequoiadendron giganteum HOM05D004493 ORTHO05D005117 1.5e-14 87.0 125 38.4
MSTRG.12811 Avicennia marina HOM05D004493 ORTHO05D005117 1.3e-13 84.0 120 48.3
QL04p013873 Quercus lobata HOM05D004493 ORTHO05D005117 1.9e-12 80.1 69 53.6
FAN14G4108 Fragaria x ananassa HOM05D004493 ORTHO05D005117 9.2e-12 77.8 66 53.0
FAN26G0295 Fragaria x ananassa HOM05D000290 ORTHO05D006676 1.3e-10 73.9 66 51.5
FAN14G5048 Fragaria x ananassa HOM05D004493 ORTHO05D005117 6.6e-10 71.6 63 50.8
unitig_0.g1240 Utricularia gibba HOM05D004493 ORTHO05D005117 8.6e-10 71.2 332 32.2
AagrBONN_evm.TU.Sc2ySwM_228.300 Anthoceros agrestis HOM05D004493 ORTHO05D005117 1.9e-09 70.1 335 26.0
CDE02G0298 Ceratophyllum demersum HOM05D004493 ORTHO05D005117 2.1e-08 66.6 60 53.3
FAN12G3781 Fragaria x ananassa HOM05D004493 ORTHO05D005117 2.1e-08 66.6 57 52.6
FAN10G2778 Fragaria x ananassa HOM05D004493 ORTHO05D005117 2.3e-07 63.2 47 57.4
Cre07.g313500 Chlamydomonas reinhardtii HOM05D051285 ORTHO05D005117 2.0e-06 60.1 419 22.2
RcHm_v2.0_Chr7g0214951 Rosa chinensis HOM05D004493 ORTHO05D005117 9.8e-06 57.8 60 48.3


User provided reference genes

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