Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.M9HC5A Arachis hypogaea HOM05D003469 ORTHO05D004084 0.0e+00 1835.1 979 100.0
arahy.Tifrunner.gnm1.ann1.046I3L Arachis hypogaea HOM05D003469 ORTHO05D004084 0.0e+00 1704.9 957 95.5
Glyma.11G102000 Glycine max HOM05D003469 ORTHO05D004084 0.0e+00 1317.8 889 75.5
Glyma.12G027700 Glycine max HOM05D003469 ORTHO05D004084 0.0e+00 1317.4 889 75.4
Phvul.011G031000 Phaseolus vulgaris HOM05D003469 ORTHO05D004084 0.0e+00 1314.3 889 74.7
Lalb_Chr07g0195581 Lupinus albus HOM05D003469 ORTHO05D004084 0.0e+00 1295.8 904 74.3
VMungo1127G1455 Vigna mungo HOM05D003469 ORTHO05D004084 0.0e+00 1263.4 890 73.0
Lj1g0005967 Lotus japonicus HOM05D003469 ORTHO05D004084 0.0e+00 1236.5 887 71.9
Medtr4g079390 Medicago truncatula HOM05D003469 ORTHO05D004084 0.0e+00 1152.5 891 67.0
CiPaw.03G010300 Carya illinoinensis HOM05D003469 ORTHO05D004084 0.0e+00 1125.9 891 65.2
Medtr4g074860 Medicago truncatula HOM05D003469 ORTHO05D004084 0.0e+00 1123.6 909 65.3
TPR.G38733 Trifolium pratense HOM05D003469 ORTHO05D004084 0.0e+00 1111.3 891 65.3
TAR628G0771 Trochodendron aralioides HOM05D003469 ORTHO05D004084 0.0e+00 1106.7 888 63.7
Thecc.08G168800 Theobroma cacao HOM05D003469 ORTHO05D004084 1.9e-304 1049.3 889 61.5
GSVIVG01036699001 Vitis vinifera HOM05D003469 ORTHO05D004084 3.5e-303 1045.0 923 59.5
Actinidia21939 Actinidia chinensis HOM05D003469 ORTHO05D004084 1.2e-295 1020.0 888 58.9
Solyc06g063420.4 Solanum lycopersicum HOM05D003469 ORTHO05D004084 3.3e-293 1011.9 895 57.8
Eucgr.G01221 Eucalyptus grandis HOM05D003469 ORTHO05D004084 7.3e-293 1010.7 884 59.2
Sopen06g022880 Solanum pennellii HOM05D003469 ORTHO05D004084 2.8e-292 1008.8 893 58.0
Dinv28114 Davidia involucrata HOM05D003469 ORTHO05D004084 3.6e-292 1008.4 890 58.5
CANSAT78G0348 Cannabis sativa HOM05D003469 ORTHO05D004084 7.6e-290 1000.7 899 59.2
ClCG07G013810 Citrullus lanatus HOM05D003469 ORTHO05D004084 6.4e-289 997.7 891 57.4
MELO3C013095.2 Cucumis melo HOM05D003469 ORTHO05D004084 1.2e-287 993.4 891 56.9
CsaV3_3G043790 Cucumis sativus L. HOM05D003469 ORTHO05D004084 7.9e-287 990.7 891 57.0
Nn5g27173 Nelumbo nucifera HOM05D003469 ORTHO05D004084 7.9e-287 990.7 888 57.4
Cc00_g11470 Coffea canephora HOM05D003469 ORTHO05D004084 2.9e-281 972.2 888 57.1
PSO170G4646 Papaver somniferum HOM05D003469 ORTHO05D004084 8.4e-281 970.7 892 56.6
MBI03_g18641_MAGBIO Magnolia biondii HOM05D003469 ORTHO05D004084 3.9e-278 961.8 890 57.0
Sed0013857 Sechium edule HOM05D003469 ORTHO05D004084 4.3e-277 958.4 891 55.4
FvH4_6g37900 Fragaria vesca HOM05D003469 ORTHO05D004084 7.4e-277 957.6 888 55.2
FAN14G5376 Fragaria x ananassa HOM05D003469 ORTHO05D004084 2.1e-276 956.1 888 55.1
Sc09g0010840 Simmondsia chinensis HOM05D003469 ORTHO05D004084 3.7e-276 955.3 883 57.3
MSTRG.1003 Avicennia marina HOM05D003469 ORTHO05D004084 1.3e-273 946.8 887 55.8
RcHm_v2.0_Chr2g0151101 Rosa chinensis HOM05D003469 ORTHO05D004084 1.2e-271 940.3 878 55.2
Atru.chr9.1130 Acer truncatum HOM05D003469 ORTHO05D004084 1.8e-270 936.4 891 55.1
TWI38G1177 Tripterygium wilfordii HOM05D003469 ORTHO05D004084 3.9e-270 935.3 862 56.5
FAN02G0848 Fragaria x ananassa HOM05D003469 ORTHO05D004084 1.5e-269 933.3 888 54.2
FAN09G4617 Fragaria x ananassa HOM05D003469 ORTHO05D004084 2.2e-268 929.5 888 53.7
Rhsim12G0000800 Rhododendron simsii HOM05D003469 ORTHO05D004084 6.9e-267 924.5 771 61.1
Aqoxy6G00028 Aquilegia oxysepala HOM05D003469 ORTHO05D004084 2.0e-266 922.9 890 54.4
EL10Ac5g10861 Beta vulgaris HOM05D003469 ORTHO05D004084 2.0e-266 922.9 910 53.0
Nitab4.5_0003757g0100 Nicotiana tabacum HOM05D003469 ORTHO05D004084 2.6e-266 922.5 904 55.1
Gorai.008G247300 Gossypium raimondii HOM05D003469 ORTHO05D004084 1.0e-265 920.6 862 56.8
QL09p054764 Quercus lobata HOM05D003469 ORTHO05D004084 1.7e-265 919.8 782 61.6
TPR.G32330 Trifolium pratense HOM05D003469 ORTHO05D004084 2.9e-265 919.1 885 57.9
Migut.C00329 Erythranthe guttata HOM05D003469 ORTHO05D004084 5.5e-264 914.8 889 54.4
Peaxi162Scf00818g00323 Petunia axillaris HOM05D003469 ORTHO05D004084 1.4e-262 910.2 844 55.8
Gohir.A12G230000 Gossypium hirsutum HOM05D003469 ORTHO05D004084 2.0e-261 906.4 862 55.8
RcHm_v2.0_Chr2g0151071 Rosa chinensis HOM05D003469 ORTHO05D004084 5.7e-261 904.8 888 53.4
AUR62008300 Chenopodium quinoa HOM05D003469 ORTHO05D004084 9.7e-261 904.0 893 53.2
CSS0010807 Camellia sinensis var. sinensis HOM05D003469 ORTHO05D004084 1.3e-260 903.7 889 54.6
Gohir.D12G231100 Gossypium hirsutum HOM05D003469 ORTHO05D004084 2.4e-259 899.4 862 56.0
CAN.G14.42 Capsicum annuum HOM05D003469 ORTHO05D004084 1.2e-258 897.1 894 53.1
Duzib235G0325 Durio zibethinus HOM05D003469 ORTHO05D004084 3.4e-258 895.6 860 55.9
HanXRQChr09g0266911 Helianthus annuus HOM05D003469 ORTHO05D004084 5.5e-256 888.3 864 53.8
ECA232G2309 Erigeron canadensis HOM05D003469 ORTHO05D004084 7.2e-256 887.9 886 52.8
Lj9C173G0 Lonicera japonica HOM05D003469 ORTHO05D004084 1.0e-254 884.0 879 54.9
Hund09398 Selenicereus undatus HOM05D003469 ORTHO05D004084 1.8e-254 883.2 886 54.1
DCAR_001477 Daucus carota HOM05D003469 ORTHO05D004084 2.0e-253 879.8 900 53.1
Lj9C162G1 Lonicera japonica HOM05D003469 ORTHO05D004084 2.0e-253 879.8 912 53.6
Prupe.8G070000 Prunus persica HOM05D003469 ORTHO05D004084 3.7e-252 875.5 888 53.0
AUR62031062 Chenopodium quinoa HOM05D003469 ORTHO05D004084 9.4e-248 860.9 887 52.1
SalBow7G2370 Salvia bowleyana HOM05D003469 ORTHO05D004084 1.6e-247 860.1 926 52.2
Manes.06G016500 Manihot esculenta HOM05D003469 ORTHO05D004084 5.7e-245 851.7 838 55.1
MD09G1155000 Malus domestica HOM05D003469 ORTHO05D004084 7.7e-242 841.3 885 51.5
HPP92_015320 Vanilla planifolia HOM05D003469 ORTHO05D004084 1.9e-240 836.6 875 52.0
Lsat_1_v5_gn_4_131841 Lactuca sativa HOM05D003469 ORTHO05D004084 1.4e-238 830.5 892 50.6
SGA_v2.0_scaffold8G04312 Striga asiatica HOM05D003469 ORTHO05D004084 6.8e-238 828.2 954 48.7
unitig_26.g9845 Utricularia gibba HOM05D003469 ORTHO05D004084 1.2e-237 827.4 920 49.3
Potri.013G128900 Populus trichocarpa HOM05D003469 ORTHO05D004084 5.7e-229 798.5 866 51.3
Dinv15687 Davidia involucrata HOM05D003469 ORTHO05D004084 1.3e-228 797.3 888 50.8
Nitab4.5_0002906g0070 Nicotiana tabacum HOM05D003469 ORTHO05D004084 3.8e-225 785.8 851 49.6
Nitab4.5_0005224g0040 Nicotiana tabacum HOM05D003469 ORTHO05D004084 8.6e-225 784.6 857 49.0
RcHm_v2.0_Chr6g0293861 Rosa chinensis HOM05D003469 ORTHO05D004084 8.6e-225 784.6 894 49.4
Os11g0266800 Oryza sativa ssp. japonica HOM05D003469 ORTHO05D004084 8.9e-222 774.6 862 46.9
Nitab4.5_0002354g0130 Nicotiana tabacum HOM05D003469 ORTHO05D004084 1.3e-220 770.8 903 48.9
Aqoxy4G02849 Aquilegia oxysepala HOM05D003469 ORTHO05D004084 4.6e-218 762.3 887 48.3
FAN24G3399 Fragaria x ananassa HOM05D003469 ORTHO05D004084 2.3e-217 760.0 892 47.6
SMO164G0159 Selaginella moellendorffii HOM05D003469 ORTHO05D004084 6.6e-217 758.4 897 46.8
Peaxi162Scf00015g00107 Petunia axillaris HOM05D003469 ORTHO05D004084 5.6e-216 755.4 857 48.2
FAN15G0576 Fragaria x ananassa HOM05D003469 ORTHO05D004084 6.2e-215 751.9 892 47.3
vmacro00914 Vaccinium macrocarpon HOM05D003469 ORTHO05D004084 2.9e-212 743.0 1341 36.8
FAN27G0386 Fragaria x ananassa HOM05D003469 ORTHO05D004084 7.8e-210 734.9 876 47.4
THA.LOC104807542 Tarenaya hassleriana HOM05D003469 ORTHO05D004084 8.6e-209 731.5 863 47.0
BraA06t24509Z Brassica rapa HOM05D003469 ORTHO05D004084 2.2e-204 716.8 866 46.0
A06p13570 Brassica napus HOM05D003469 ORTHO05D004084 2.9e-204 716.5 866 46.0
C05p16090 Brassica napus HOM05D003469 ORTHO05D004084 3.3e-200 703.0 866 45.2
BolC5t30309H Brassica oleracea HOM05D003469 ORTHO05D004084 4.3e-200 702.6 866 45.0
BcaC05g25689 Brassica carinata HOM05D003469 ORTHO05D004084 9.5e-200 701.4 866 45.0
Carub.0001s1741 Capsella rubella HOM05D003469 ORTHO05D004084 2.3e-198 696.8 863 45.8
BolC4t22588H Brassica oleracea HOM05D003469 ORTHO05D004084 5.2e-198 695.7 863 45.0
AT1G17680 Arabidopsis thaliana HOM05D003469 ORTHO05D004084 6.8e-198 695.3 871 45.5
AL1G30030 Arabidopsis lyrata HOM05D003469 ORTHO05D004084 4.9e-196 689.1 871 44.8
Thhalv10006758m.g Eutrema salsugineum HOM05D003469 ORTHO05D004084 2.4e-195 686.8 862 44.4
BcaB07g34024 Brassica carinata HOM05D003469 ORTHO05D004084 1.6e-194 684.1 866 44.0
FvH4_2g25610 Fragaria vesca HOM05D003469 ORTHO05D004084 2.1e-194 683.7 892 44.2
Ciclev10026956m.g Citrus clementina HOM05D003469 ORTHO05D004084 3.9e-193 679.5 872 45.5
BcaC02g11929 Brassica carinata HOM05D003469 ORTHO05D004084 6.6e-193 678.7 863 43.9
Lj9A422T76 Lonicera japonica HOM05D003469 ORTHO05D004084 6.6e-193 678.7 767 48.9
AUR62039415 Chenopodium quinoa HOM05D003469 ORTHO05D004084 1.2e-191 674.5 678 52.1
Ah.15g095790 Amaranthus hybridus HOM05D003469 ORTHO05D004084 1.8e-190 670.6 1379 34.3
Mapoly0024s0108 Marchantia polymorpha HOM05D003469 ORTHO05D004084 8.4e-188 661.8 846 43.3
C04p09790 Brassica napus HOM05D003469 ORTHO05D004084 2.1e-186 657.1 877 43.2
Pp3c8_10360 Physcomitrium patens HOM05D003469 ORTHO05D004084 6.0e-186 655.6 912 42.5
AagrBONN_evm.TU.Sc2ySwM_362.2764 Anthoceros agrestis HOM05D003469 ORTHO05D004084 3.0e-185 653.3 870 42.3
Aa31LG7G2510 Aethionema arabicum HOM05D003469 ORTHO05D004084 4.3e-184 649.4 863 42.4
Ciclev10019721m.g Citrus clementina HOM05D003469 ORTHO05D004084 4.8e-183 646.0 533 61.7
Zm00001eb171180 Zea mays HOM05D003469 ORTHO05D004084 1.3e-180 637.9 730 46.7
Haze_14033 Corylus avellana HOM05D003469 ORTHO05D004084 7.4e-176 622.1 569 59.2
THA.LOC104800339 Tarenaya hassleriana HOM05D003469 ORTHO05D004084 2.4e-171 607.1 867 41.8
Pp3c8_10366 Physcomitrium patens HOM05D003469 ORTHO05D004084 7.1e-171 605.5 908 40.9
ATR1089G047 Amborella trichopoda HOM05D003469 ORTHO05D004084 2.6e-165 587.0 881 39.8
Ca_19034_v3 Cicer arietinum L. HOM05D003469 ORTHO05D004084 1.4e-163 581.3 334 84.7
CDE05G0531 Ceratophyllum demersum HOM05D003469 ORTHO05D004084 7.1e-163 578.9 466 62.2
TAR633G1289 Trochodendron aralioides HOM05D003469 ORTHO05D004084 6.1e-154 549.3 413 65.4
TAR633G1719 Trochodendron aralioides HOM05D003469 ORTHO05D004084 2.5e-131 474.2 428 58.2
PGSC0003DMG400033134 Solanum tuberosum HOM05D003469 ORTHO05D004084 1.4e-126 458.4 319 68.3
EL10Ac5g10434 Beta vulgaris HOM05D003469 ORTHO05D004084 1.6e-125 454.9 663 41.3
Sp1g15780 Schrenkiella parvula HOM05D003469 ORTHO05D004084 2.0e-120 438.0 428 50.9
MD17G1141100 Malus domestica HOM05D003469 ORTHO05D004084 3.7e-119 433.7 312 67.9
FvH4_6g38030 Fragaria vesca HOM05D003469 ORTHO05D004084 9.5e-107 392.5 397 50.4
C04p00480 Brassica napus HOM05D003469 ORTHO05D004084 8.0e-106 389.4 805 32.4
Ca_16139_v3 Cicer arietinum L. HOM05D003469 ORTHO05D004084 1.2e-104 385.6 349 59.0
FvH4_6g38050 Fragaria vesca HOM05D003469 ORTHO05D004084 4.4e-104 383.6 823 34.0
Oeu019664.1 Olea europaea HOM05D003469 ORTHO05D004084 4.1e-102 377.1 363 52.6
CBR_g36749 Chara braunii HOM05D003469 ORTHO05D004084 1.2e-101 375.6 1095 26.1
Cpa.g.sc21.245 Carica papaya HOM05D003469 ORTHO05D004084 2.8e-98 364.4 365 53.2
AUR62000094 Chenopodium quinoa HOM05D003469 ORTHO05D004084 8.3e-95 352.8 469 44.3
COL.COLO4_25121 Corchorus olitorius HOM05D003469 ORTHO05D004084 7.0e-94 349.7 390 51.3
MD17G1141000 Malus domestica HOM05D003469 ORTHO05D004084 1.7e-92 345.1 412 44.2
SHI03012 Sapria himalayana HOM05D003469 ORTHO05D004084 4.3e-91 340.5 271 62.0
Potri.013G129500 Populus trichocarpa HOM05D003469 ORTHO05D000003 1.9e-86 325.1 389 48.1
CDE05G3544 Ceratophyllum demersum HOM05D003469 ORTHO05D004084 4.1e-86 323.9 375 48.8
Sp4g05240 Schrenkiella parvula HOM05D000751 ORTHO05D005618 2.1e-85 321.6 600 34.8
CARHR018280 Cardamine hirsuta HOM05D003469 ORTHO05D004084 1.8e-81 308.5 489 39.9
Medtr4g074690 Medicago truncatula HOM05D003469 ORTHO05D004084 1.4e-78 298.9 287 57.5
vmacro23125 Vaccinium macrocarpon HOM05D003469 ORTHO05D004084 5.2e-73 280.4 415 40.5
FAN20G2279 Fragaria x ananassa HOM05D003469 ORTHO05D004084 1.1e-70 272.7 513 34.9
HanXRQChr13g0406831 Helianthus annuus HOM05D003469 ORTHO05D004084 1.4e-70 272.3 195 64.6
SHI03015 Sapria himalayana HOM05D003469 ORTHO05D004084 1.7e-63 248.8 250 51.6
SEGI_08666 Sequoiadendron giganteum HOM05D003469 ORTHO05D004084 9.6e-59 233.0 181 62.4
COL.COLO4_25120 Corchorus olitorius HOM05D003469 ORTHO05D004084 3.4e-56 224.6 471 37.2
Oeu035042.1 Olea europaea HOM05D003469 ORTHO05D004084 2.2e-55 221.9 279 44.8
QL09p054785 Quercus lobata HOM05D003469 ORTHO05D004084 3.8e-55 221.1 197 61.4
Ciclev10020572m.g Citrus clementina HOM05D003469 ORTHO05D004084 1.3e-50 206.1 342 36.3
Ca_16140_v3 Cicer arietinum L. HOM05D003469 ORTHO05D004084 1.4e-49 202.6 159 64.2
Thhalv10002713m.g Eutrema salsugineum HOM05D003469 ORTHO05D004084 4.0e-49 201.1 139 68.3
SEGI_05114 Sequoiadendron giganteum HOM05D003469 ORTHO05D004084 4.5e-48 197.6 145 68.3
C04p00500 Brassica napus HOM05D003469 ORTHO05D004084 1.3e-44 186.0 360 34.7
Cre10.g464950 Chlamydomonas reinhardtii HOM05D003469 ORTHO05D004084 1.9e-43 182.2 358 34.1
Glyma.07G124800 Glycine max HOM05D003469 ORTHO05D004084 8.2e-42 176.8 151 60.9
Psat0s3379g0080 Pisum sativum HOM05D003469 ORTHO05D004084 1.8e-41 175.6 206 48.5
Ca_16137_v3 Cicer arietinum L. HOM05D003469 ORTHO05D004084 2.9e-39 168.3 183 51.9
Psat0s3379g0040 Pisum sativum HOM05D003469 ORTHO05D004084 2.5e-38 165.2 127 69.3
Actinidia02459 Actinidia chinensis HOM05D003469 ORTHO05D004084 1.2e-37 162.9 120 63.3
BcaC02g12574 Brassica carinata HOM05D003469 ORTHO05D004084 2.3e-36 158.7 101 74.3
Haze_14034 Corylus avellana HOM05D003469 ORTHO05D004084 1.1e-35 156.4 134 56.7
Sabra13G0107500 Salix brachista HOM05D000001 ORTHO05D000003 1.9e-35 155.6 165 54.5
BcaC02g12573 Brassica carinata HOM05D003469 ORTHO05D004084 2.0e-32 145.6 249 35.7
Cpa.g.sc21.244 Carica papaya HOM05D003469 ORTHO05D004084 6.5e-31 140.6 89 77.5
ECA232G2749 Erigeron canadensis HOM05D001807 ORTHO05D002044 1.4e-30 139.4 88 69.3
Rhsim02G0229800 Rhododendron simsii HOM05D000151 ORTHO05D000074 3.0e-28 131.7 80 80.0
Cpa.g.sc21.247 Carica papaya HOM05D003469 ORTHO05D004084 3.9e-28 131.3 205 42.9
SEGI_26656 Sequoiadendron giganteum HOM05D003469 ORTHO05D000001 3.9e-28 131.3 167 47.9
Aa31LG2G17580 Aethionema arabicum HOM05D003469 ORTHO05D004084 1.5e-27 129.4 81 71.6
Haze_14035 Corylus avellana HOM05D003469 ORTHO05D004084 1.4e-25 122.9 207 40.6
ATR0002G001 Amborella trichopoda HOM05D003469 ORTHO05D004084 5.3e-25 120.9 84 64.3
arahy.Tifrunner.gnm1.ann1.QWX0VP Arachis hypogaea HOM05D003469 ORTHO05D004084 2.9e-23 115.2 105 61.0
Lsat_1_v5_gn_0_35341 Lactuca sativa HOM05D003469 ORTHO05D004084 2.6e-19 102.1 131 42.0
Oeu026515.1 Olea europaea HOM05D003469 ORTHO05D004084 1.1e-17 96.7 91 54.9
Psat0s2166g0160 Pisum sativum HOM05D003469 ORTHO05D004084 4.1e-17 94.7 89 56.2
SHI03013 Sapria himalayana HOM05D003469 ORTHO05D004084 3.5e-16 91.7 90 44.4
FAN20G1461 Fragaria x ananassa HOM05D003469 ORTHO05D004084 1.7e-15 89.4 125 40.8
AagrBONN_evm.TU.Sc2ySwM_362.2853 Anthoceros agrestis HOM05D003469 ORTHO05D004084 1.6e-13 82.8 93 46.2
Sp4g05220 Schrenkiella parvula HOM05D003469 ORTHO05D004084 1.6e-13 82.8 51 70.6
SEGI_39938 Sequoiadendron giganteum HOM05D003469 ORTHO05D004084 4.7e-13 81.3 122 38.5
Ca_19033_v3 Cicer arietinum L. HOM05D003469 ORTHO05D004084 1.2e-11 76.6 66 54.5
Medtr4g074700 Medicago truncatula HOM05D003469 ORTHO05D004084 4.4e-11 74.7 101 46.5
Lsat_1_v5_gn_6_14080 Lactuca sativa HOM05D002718 ORTHO05D004084 2.2e-10 72.4 71 52.1
Aa31LG2G17590 Aethionema arabicum HOM05D003469 ORTHO05D004084 3.7e-10 71.6 56 53.6
PRCOL_00004204 Prasinoderma coloniale HOM05D003469 ORTHO05D004084 8.2e-10 70.5 893 18.9
QL01p054481 Quercus lobata HOM05D003469 ORTHO05D004084 1.1e-09 70.1 48 68.8
MCO03G148 Micromonas commoda HOM05D003469 ORTHO05D004084 5.0e-07 61.2 85 41.2
MD17G1140900 Malus domestica HOM05D003469 ORTHO05D004084 1.9e-06 59.3 78 50.0
Lj9A422T78 Lonicera japonica HOM05D003469 ORTHO05D029064 9.4e-06 57.0 88 47.7


User provided reference genes

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