Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.M920DF Arachis hypogaea HOM05D005020 ORTHO05D006017 1.2e-66 256.5 148 100.0
arahy.Tifrunner.gnm1.ann1.74ZUP2 Arachis hypogaea HOM05D005020 ORTHO05D006017 1.0e-65 253.4 148 98.6
arahy.Tifrunner.gnm1.ann1.2XGW09 Arachis hypogaea HOM05D005020 ORTHO05D006017 1.9e-51 206.1 149 75.2
Potri.001G396700 Populus trichocarpa HOM05D005020 ORTHO05D006017 1.1e-19 100.5 146 50.7
ClCG05G009260 Citrullus lanatus HOM05D005020 ORTHO05D006017 1.9e-19 99.8 161 53.4
Thecc.07G096200 Theobroma cacao HOM05D005020 ORTHO05D006017 1.9e-19 99.8 167 46.1
Duzib170G0405 Durio zibethinus HOM05D005020 ORTHO05D006017 4.3e-19 98.6 152 53.3
CsaV3_3G019510 Cucumis sativus L. HOM05D005020 ORTHO05D006017 7.3e-19 97.8 160 52.5
MELO3C019403.2 Cucumis melo HOM05D005020 ORTHO05D006017 1.2e-18 97.1 160 49.4
Phvul.011G128100 Phaseolus vulgaris HOM05D005020 ORTHO05D006017 1.1e-17 94.0 146 43.2
VMungo1127G0297 Vigna mungo HOM05D005020 ORTHO05D006017 5.2e-17 91.7 146 43.2
Haze_09410 Corylus avellana HOM05D005020 ORTHO05D006017 8.9e-17 90.9 149 43.6
Glyma.13G274200 Glycine max HOM05D005020 ORTHO05D006017 7.3e-11 71.2 46 71.7
Eucgr.F01166 Eucalyptus grandis HOM05D005020 ORTHO05D006017 6.2e-10 68.2 115 47.0
Sabra16G0259800 Salix brachista HOM05D005020 ORTHO05D006017 8.1e-10 67.8 47 66.0
FvH4_4g16940 Fragaria vesca HOM05D005020 ORTHO05D006017 2.4e-09 66.2 44 72.7
FAN07G1494 Fragaria x ananassa HOM05D005020 ORTHO05D006017 2.4e-09 66.2 44 72.7
FAN12G2862 Fragaria x ananassa HOM05D005020 ORTHO05D006017 2.4e-09 66.2 44 72.7
FAN12G3322 Fragaria x ananassa HOM05D005020 ORTHO05D006017 2.4e-09 66.2 44 72.7
FAN17G2450 Fragaria x ananassa HOM05D005020 ORTHO05D006017 2.4e-09 66.2 44 72.7
Cpa.g.sc16.89 Carica papaya HOM05D005020 ORTHO05D006017 3.1e-09 65.9 48 66.7
Cfa020606 Carpinus fangiana HOM05D006014 ORTHO05D007608 4.0e-09 65.5 160 33.1
SalBow2G1326 Salvia bowleyana HOM05D005020 ORTHO05D006017 4.0e-09 65.5 48 62.5
Potri.010G025900 Populus trichocarpa HOM05D005020 ORTHO05D006017 5.2e-09 65.1 48 64.6
Sabra10G0013700 Salix brachista HOM05D005020 ORTHO05D006017 5.2e-09 65.1 48 64.6
CANSAT56G0421 Cannabis sativa HOM05D005020 ORTHO05D006017 6.8e-09 64.7 44 70.5
CANSAT56G2258 Cannabis sativa HOM05D005020 ORTHO05D006017 6.8e-09 64.7 44 70.5
CANSAT78G0757 Cannabis sativa HOM05D005020 ORTHO05D006017 6.8e-09 64.7 44 70.5
Cc03_g02550 Coffea canephora HOM05D005020 ORTHO05D006017 6.8e-09 64.7 48 64.6
RcHm_v2.0_Chr4g0420521 Rosa chinensis HOM05D005020 ORTHO05D006017 6.8e-09 64.7 44 70.5
TWI09G1024 Tripterygium wilfordii HOM05D005020 ORTHO05D006017 6.8e-09 64.7 48 64.6
Manes.03G189700 Manihot esculenta HOM05D005020 ORTHO05D006017 1.2e-08 63.9 48 64.6
Manes.15G018900 Manihot esculenta HOM05D005020 ORTHO05D006017 1.2e-08 63.9 48 64.6
Aa31LG5G16820 Aethionema arabicum HOM05D000373 ORTHO05D001146 2.0e-08 63.2 48 62.5
AL3G17250 Arabidopsis lyrata HOM05D005020 ORTHO05D006017 2.0e-08 63.2 48 62.5
AL6G30140 Arabidopsis lyrata HOM05D005020 ORTHO05D006017 2.0e-08 63.2 48 62.5
AT3G06320 Arabidopsis thaliana HOM05D005020 ORTHO05D006017 2.0e-08 63.2 48 62.5
AT5G18790 Arabidopsis thaliana HOM05D005020 ORTHO05D006017 2.0e-08 63.2 48 62.5
BcaB01g04890 Brassica carinata HOM05D005020 ORTHO05D006017 2.0e-08 63.2 48 62.5
BcaB01g05274 Brassica carinata HOM05D005020 ORTHO05D006017 2.0e-08 63.2 48 62.5
BcaB08g36644 Brassica carinata HOM05D005020 ORTHO05D006017 2.0e-08 63.2 48 62.5
BcaC03g13617 Brassica carinata HOM05D005020 ORTHO05D006017 2.0e-08 63.2 48 62.5
BcaC04g18647 Brassica carinata HOM05D005020 ORTHO05D006017 2.0e-08 63.2 48 62.5
A03p09130 Brassica napus HOM05D005020 ORTHO05D006017 2.0e-08 63.2 48 62.5
A10p20820 Brassica napus HOM05D005020 ORTHO05D006017 2.0e-08 63.2 48 62.5
C03p10660 Brassica napus HOM05D005020 ORTHO05D006017 2.0e-08 63.2 48 62.5
C09p57700 Brassica napus HOM05D005020 ORTHO05D006017 2.0e-08 63.2 48 62.5
BolC2t06915H Brassica oleracea HOM05D005020 ORTHO05D006017 2.0e-08 63.2 48 62.5
BolC3t13542H Brassica oleracea HOM05D005020 ORTHO05D006017 2.0e-08 63.2 48 62.5
BolC9t58641H Brassica oleracea HOM05D005020 ORTHO05D006017 2.0e-08 63.2 48 62.5
BraA02t05468Z Brassica rapa HOM05D005020 ORTHO05D006017 2.0e-08 63.2 48 62.5
BraA03t10236Z Brassica rapa HOM05D005020 ORTHO05D006017 2.0e-08 63.2 48 62.5
BraA10t44147Z Brassica rapa HOM05D005020 ORTHO05D006017 2.0e-08 63.2 48 62.5
Carub.0003s0575 Capsella rubella HOM05D005020 ORTHO05D006017 2.0e-08 63.2 48 62.5
Carub.0006s1709 Capsella rubella HOM05D005020 ORTHO05D006017 2.0e-08 63.2 48 62.5
CARHR080840 Cardamine hirsuta HOM05D005020 ORTHO05D006017 2.0e-08 63.2 48 62.5
CARHR194220 Cardamine hirsuta HOM05D005020 ORTHO05D006017 2.0e-08 63.2 48 62.5
Migut.N00131 Erythranthe guttata HOM05D005020 ORTHO05D006017 2.0e-08 63.2 48 60.4
Thhalv10015229m.g Eutrema salsugineum HOM05D005020 ORTHO05D006017 2.0e-08 63.2 48 62.5
Thhalv10022246m.g Eutrema salsugineum HOM05D005020 ORTHO05D006017 2.0e-08 63.2 48 62.5
Gohir.D10G164900 Gossypium hirsutum HOM05D005020 ORTHO05D006017 2.0e-08 63.2 48 64.6
Sp3g05230 Schrenkiella parvula HOM05D005020 ORTHO05D006017 2.0e-08 63.2 48 62.5
Sp6g25600 Schrenkiella parvula HOM05D005020 ORTHO05D006017 2.0e-08 63.2 48 62.5
THA.LOC104827124 Tarenaya hassleriana HOM05D005020 ORTHO05D006017 2.0e-08 63.2 48 62.5
GSVIVG01017833001 Vitis vinifera HOM05D005020 ORTHO05D006017 2.6e-08 62.8 45 66.7
ClCG03G006340 Citrullus lanatus HOM05D005020 ORTHO05D006017 3.4e-08 62.4 44 68.2
MELO3C002800.2 Cucumis melo HOM05D005020 ORTHO05D006017 3.4e-08 62.4 44 68.2
CsaV3_1G037420 Cucumis sativus L. HOM05D005020 ORTHO05D006017 3.4e-08 62.4 44 68.2
Lalb_Chr19g0127231 Lupinus albus HOM05D005020 ORTHO05D006017 3.4e-08 62.4 44 63.6
MD13G1175500 Malus domestica HOM05D005020 ORTHO05D006017 3.4e-08 62.4 44 65.9
Oeu044803.1 Olea europaea HOM05D005020 ORTHO05D006017 3.4e-08 62.4 48 60.4
Sed0013068 Sechium edule HOM05D005020 ORTHO05D006017 3.4e-08 62.4 44 68.2
Sed0022382 Sechium edule HOM05D005020 ORTHO05D006017 3.4e-08 62.4 44 68.2
SGA_v2.0_scaffold89G27567 Striga asiatica HOM05D005020 ORTHO05D006017 3.4e-08 62.4 48 60.4
unitig_0.g344 Utricularia gibba HOM05D005020 ORTHO05D006017 3.4e-08 62.4 48 60.4
Duzib052G0657 Durio zibethinus HOM05D005020 ORTHO05D006017 4.4e-08 62.0 48 62.5
Duzib151G1019 Durio zibethinus HOM05D005020 ORTHO05D006017 4.4e-08 62.0 48 62.5
ECA236G1604 Erigeron canadensis HOM05D001652 ORTHO05D001768 4.4e-08 62.0 46 67.4
Gohir.A09G232900 Gossypium hirsutum HOM05D005020 ORTHO05D006017 4.4e-08 62.0 48 62.5
Gohir.A10G103500 Gossypium hirsutum HOM05D005020 ORTHO05D006017 4.4e-08 62.0 48 62.5
Gohir.D09G234000 Gossypium hirsutum HOM05D005020 ORTHO05D006017 4.4e-08 62.0 48 62.5
Gorai.006G256900 Gossypium raimondii HOM05D005020 ORTHO05D006017 4.4e-08 62.0 48 62.5
Gorai.011G184100 Gossypium raimondii HOM05D005020 ORTHO05D006017 4.4e-08 62.0 48 62.5
MD16G1177300 Malus domestica HOM05D005020 ORTHO05D006017 4.4e-08 62.0 44 65.9
Os05g0452600 Oryza sativa ssp. japonica HOM05D005020 ORTHO05D006017 4.4e-08 62.0 45 71.1
Os05g0513500 Oryza sativa ssp. japonica HOM05D005020 ORTHO05D006017 4.4e-08 62.0 45 71.1
PGR004G1273 Punica granatum HOM05D005020 ORTHO05D006017 4.4e-08 62.0 45 68.9
Thecc.04G274600 Theobroma cacao HOM05D005020 ORTHO05D006017 4.4e-08 62.0 48 62.5
Migut.N02789 Erythranthe guttata HOM05D005020 ORTHO05D006017 5.8e-08 61.6 48 60.4
HanXRQChr04g0113831 Helianthus annuus HOM05D005020 ORTHO05D006017 5.8e-08 61.6 46 60.9
Sc07g0000370 Simmondsia chinensis HOM05D005020 ORTHO05D006017 5.8e-08 61.6 45 66.7
arahy.Tifrunner.gnm1.ann1.9N5T6G Arachis hypogaea HOM05D005020 ORTHO05D006017 7.6e-08 61.2 44 63.6
arahy.Tifrunner.gnm1.ann1.X3M77N Arachis hypogaea HOM05D005020 ORTHO05D006017 7.6e-08 61.2 44 63.6
Glyma.14G127700 Glycine max HOM05D005020 ORTHO05D006017 7.6e-08 61.2 44 63.6
Glyma.17G206500 Glycine max HOM05D005020 ORTHO05D006017 7.6e-08 61.2 44 63.6
Medtr1g015500 Medicago truncatula HOM05D005020 ORTHO05D006017 7.6e-08 61.2 44 63.6
TPR.G15673 Trifolium pratense HOM05D005020 ORTHO05D006017 7.6e-08 61.2 44 63.6
CSS0014078 Camellia sinensis var. sinensis HOM05D005020 ORTHO05D006017 9.9e-08 60.8 45 68.9
DCAR_021248 Daucus carota HOM05D005020 ORTHO05D006017 9.9e-08 60.8 46 63.0
MBI19_g27958_MAGBIO Magnolia biondii HOM05D005020 ORTHO05D006017 9.9e-08 60.8 45 66.7
MBI19_g38516_MAGBIO Magnolia biondii HOM05D005020 ORTHO05D006017 9.9e-08 60.8 45 66.7
SHI00341 Sapria himalayana HOM05D005020 ORTHO05D006017 9.9e-08 60.8 46 60.9
Prupe.1G144200 Prunus persica HOM05D005020 ORTHO05D006017 1.3e-07 60.5 44 63.6
Aqoxy5G00600 Aquilegia oxysepala HOM05D005020 ORTHO05D006017 1.7e-07 60.1 45 64.4
Dinv44441 Davidia involucrata HOM05D005020 ORTHO05D006017 1.7e-07 60.1 45 68.9
Hma1.2p1_0078F.1_g040900 Hydrangea macrophylla HOM05D005020 ORTHO05D006017 2.2e-07 59.7 45 66.7
Hma1.2p1_1671F.1_g296720 Hydrangea macrophylla HOM05D005020 ORTHO05D006017 2.2e-07 59.7 45 66.7
Lj1g0002998 Lotus japonicus HOM05D005020 ORTHO05D006017 2.2e-07 59.7 44 61.4
Lj4g0020188 Lotus japonicus HOM05D005020 ORTHO05D006017 2.2e-07 59.7 44 61.4
Nn3g21237 Nelumbo nucifera HOM05D005020 ORTHO05D006017 2.2e-07 59.7 45 62.2
Phvul.001G054200 Phaseolus vulgaris HOM05D005020 ORTHO05D006017 2.2e-07 59.7 44 61.4
Phvul.L006901 Phaseolus vulgaris HOM05D005020 ORTHO05D006017 2.2e-07 59.7 44 61.4
Psat6g030200 Pisum sativum HOM05D005020 ORTHO05D006017 2.2e-07 59.7 44 61.4
RcHm_v2.0_Chr7g0218551 Rosa chinensis HOM05D005020 ORTHO05D006017 2.2e-07 59.7 45 64.4
vmacro08225 Vaccinium macrocarpon HOM05D005020 ORTHO05D006017 2.2e-07 59.7 45 66.7
Ca_12921_v3 Cicer arietinum L. HOM05D005020 ORTHO05D006017 2.9e-07 59.3 44 61.4
Hma1.2p1_0643F.1_g194650 Hydrangea macrophylla HOM05D005020 ORTHO05D006017 2.9e-07 59.3 45 66.7
Pp3c25_230 Physcomitrium patens HOM05D005020 ORTHO05D006017 3.8e-07 58.9 46 60.9
Cfa015516 Carpinus fangiana HOM05D005020 ORTHO05D006017 4.9e-07 58.5 44 63.6
CiPaw.01G155200 Carya illinoinensis HOM05D005020 ORTHO05D006017 4.9e-07 58.5 44 63.6
MD10G1048100 Malus domestica HOM05D005020 ORTHO05D006017 4.9e-07 58.5 45 60.0
Hund19410 Selenicereus undatus HOM05D005020 ORTHO05D006017 6.4e-07 58.2 45 62.2
Mapoly0051s0101 Marchantia polymorpha HOM05D005020 ORTHO05D006017 8.4e-07 57.8 46 60.9
Nitab4.5_0000191g0090 Nicotiana tabacum HOM05D005020 ORTHO05D006017 1.1e-06 57.4 47 55.3
Nitab4.5_0001044g0170 Nicotiana tabacum HOM05D005020 ORTHO05D006017 1.1e-06 57.4 47 55.3
Nitab4.5_0003546g0060 Nicotiana tabacum HOM05D005020 ORTHO05D006017 1.1e-06 57.4 47 55.3
Peaxi162Scf00989g00014 Petunia axillaris HOM05D005020 ORTHO05D006017 1.1e-06 57.4 47 55.3
EL10Ac1g01270 Beta vulgaris HOM05D005020 ORTHO05D006017 1.9e-06 56.6 45 60.0
FvH4_7g00350 Fragaria vesca HOM05D005020 ORTHO05D006017 2.4e-06 56.2 45 60.0
FAN06G3024 Fragaria x ananassa HOM05D005020 ORTHO05D006017 2.4e-06 56.2 45 60.0
AUR62013383 Chenopodium quinoa HOM05D006144 ORTHO05D006017 3.2e-06 55.8 45 60.0
AUR62042176 Chenopodium quinoa HOM05D005020 ORTHO05D006017 3.2e-06 55.8 45 60.0
SMO164G0143 Selaginella moellendorffii HOM05D005020 ORTHO05D006017 5.4e-06 55.1 46 58.7
PRCOL_00001856 Prasinoderma coloniale HOM05D005020 ORTHO05D006017 9.2e-06 54.3 47 53.2
Solyc04g010100.2 Solanum lycopersicum HOM05D005020 ORTHO05D006017 9.2e-06 54.3 47 53.2
Solyc04g016390.2 Solanum lycopersicum HOM05D005020 ORTHO05D006017 9.2e-06 54.3 47 53.2
Sopen04g005240 Solanum pennellii HOM05D005020 ORTHO05D006017 9.2e-06 54.3 47 53.2
Sopen04g008480 Solanum pennellii HOM05D005020 ORTHO05D006017 9.2e-06 54.3 47 53.2
PGSC0003DMG400011474 Solanum tuberosum HOM05D005020 ORTHO05D006017 9.2e-06 54.3 47 53.2
PGSC0003DMG400012700 Solanum tuberosum HOM05D005020 ORTHO05D006017 9.2e-06 54.3 47 53.2


User provided reference genes

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