Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.M5IJ04 Arachis hypogaea HOM05D004222 ORTHO05D004982 3.3e-101 371.7 187 100.0
arahy.Tifrunner.gnm1.ann1.J7IGQN Arachis hypogaea HOM05D004222 ORTHO05D004982 7.4e-101 370.5 187 99.5
Lalb_Chr13g0298711 Lupinus albus HOM05D004222 ORTHO05D004982 7.4e-85 317.4 179 89.4
Glyma.07G236200 Glycine max HOM05D004222 ORTHO05D004982 4.2e-80 301.6 179 86.0
Glyma.17G037200 Glycine max HOM05D004222 ORTHO05D004982 5.5e-80 301.2 179 85.5
Lj4g0027352 Lotus japonicus HOM05D004222 ORTHO05D004982 7.9e-79 297.4 179 85.5
Phvul.003G118200 Phaseolus vulgaris HOM05D004222 ORTHO05D004982 2.3e-78 295.8 179 83.2
Medtr3g015130 Medicago truncatula HOM05D004222 ORTHO05D004982 1.3e-76 290.0 181 84.5
Medtr4g123000 Medicago truncatula HOM05D004222 ORTHO05D004982 2.2e-76 289.3 181 84.0
Ca_21404_v3 Cicer arietinum L. HOM05D004222 ORTHO05D004982 6.9e-75 284.3 179 80.4
Ca_21419_v3 Cicer arietinum L. HOM05D004222 ORTHO05D004982 6.9e-75 284.3 179 80.4
Glyma.02G277500 Glycine max HOM05D004222 ORTHO05D004982 1.0e-73 280.4 181 80.7
VMungo0647G2371 Vigna mungo HOM05D004222 ORTHO05D004982 2.5e-72 275.8 179 79.9
Phvul.008G203400 Phaseolus vulgaris HOM05D004222 ORTHO05D004982 7.2e-72 274.2 179 79.9
TPR.G18581 Trifolium pratense HOM05D004222 ORTHO05D004982 2.1e-71 272.7 180 78.9
Psat0s1953g0320 Pisum sativum HOM05D004222 ORTHO05D004982 1.1e-69 266.9 185 78.9
VMungo1215G2100 Vigna mungo HOM05D004222 ORTHO05D004982 2.0e-69 266.2 254 59.1
Potri.001G168300 Populus trichocarpa HOM05D004222 ORTHO05D004982 2.6e-69 265.8 180 79.4
Manes.11G019600 Manihot esculenta HOM05D004222 ORTHO05D004982 3.3e-69 265.4 180 78.9
Haze_16054 Corylus avellana HOM05D004222 ORTHO05D004982 4.4e-69 265.0 180 77.8
Sabra01G0142300 Salix brachista HOM05D004222 ORTHO05D004982 4.4e-69 265.0 180 79.4
Manes.04G145400 Manihot esculenta HOM05D004222 ORTHO05D004982 7.4e-69 264.2 180 77.2
CiPaw.01G218100 Carya illinoinensis HOM05D004222 ORTHO05D004982 1.3e-68 263.5 179 76.0
Dinv15742 Davidia involucrata HOM05D004222 ORTHO05D004982 2.2e-68 262.7 183 76.0
Rhsim08G0239600 Rhododendron simsii HOM05D004222 ORTHO05D004982 3.7e-68 261.9 186 74.7
Rhsim01G0228800 Rhododendron simsii HOM05D004222 ORTHO05D004982 1.8e-67 259.6 184 75.0
Duzib235G1272 Durio zibethinus HOM05D004222 ORTHO05D004982 3.1e-67 258.8 180 76.1
Gorai.011G059100 Gossypium raimondii HOM05D004222 ORTHO05D004982 4.1e-67 258.5 183 76.0
ClCG09G000990 Citrullus lanatus HOM05D004222 ORTHO05D004982 7.0e-67 257.7 174 75.9
FAN09G4904 Fragaria x ananassa HOM05D004222 ORTHO05D004982 7.0e-67 257.7 178 77.0
vmacro16353 Vaccinium macrocarpon HOM05D004222 ORTHO05D004982 9.1e-67 257.3 185 74.6
RcHm_v2.0_Chr2g0145741 Rosa chinensis HOM05D004222 ORTHO05D004982 1.5e-66 256.5 181 76.8
Gohir.A10G053600 Gossypium hirsutum HOM05D004222 ORTHO05D004982 2.0e-66 256.1 183 75.4
PGR031G1684 Punica granatum HOM05D004222 ORTHO05D004982 2.0e-66 256.1 179 73.2
FvH4_6g34870 Fragaria vesca HOM05D004222 ORTHO05D004982 2.6e-66 255.8 178 76.4
FAN14G1002 Fragaria x ananassa HOM05D004222 ORTHO05D004982 2.6e-66 255.8 178 76.4
Gohir.D10G055400 Gossypium hirsutum HOM05D004222 ORTHO05D004982 3.5e-66 255.4 183 75.4
CSS0031925 Camellia sinensis var. sinensis HOM05D004222 ORTHO05D004982 4.5e-66 255.0 182 74.7
FAN02G1508 Fragaria x ananassa HOM05D004222 ORTHO05D004982 5.9e-66 254.6 178 76.4
vmacro15039 Vaccinium macrocarpon HOM05D004222 ORTHO05D004982 5.9e-66 254.6 185 74.6
TWI31G0208 Tripterygium wilfordii HOM05D004222 ORTHO05D004982 1.0e-65 253.8 174 74.7
Actinidia21792 Actinidia chinensis HOM05D004222 ORTHO05D004982 1.3e-65 253.4 179 74.3
TAR383G0284 Trochodendron aralioides HOM05D004222 ORTHO05D004982 1.7e-65 253.1 179 74.9
Cfa003517 Carpinus fangiana HOM05D004222 ORTHO05D004982 2.2e-65 252.7 169 78.7
CsaV3_7G034430 Cucumis sativus L. HOM05D004222 ORTHO05D004982 2.2e-65 252.7 181 73.5
MELO3C024352.2 Cucumis melo HOM05D004222 ORTHO05D004982 2.9e-65 252.3 181 73.5
Eucgr.G03389 Eucalyptus grandis HOM05D004222 ORTHO05D004982 2.9e-65 252.3 179 72.1
GSVIVG01016750001 Vitis vinifera HOM05D004222 ORTHO05D004982 3.8e-65 251.9 182 77.5
QL05p004213 Quercus lobata HOM05D004222 ORTHO05D004982 6.5e-65 251.1 180 75.0
CiPaw.02G135300 Carya illinoinensis HOM05D004222 ORTHO05D004982 8.5e-65 250.8 180 75.6
Dinv37865 Davidia involucrata HOM05D004222 ORTHO05D004982 8.5e-65 250.8 182 74.2
Atru.chr1.3997 Acer truncatum HOM05D004222 ORTHO05D004982 1.1e-64 250.4 180 74.4
Sc16g0009040 Simmondsia chinensis HOM05D004222 ORTHO05D004982 1.5e-64 250.0 175 74.9
Eucgr.H02488 Eucalyptus grandis HOM05D004222 ORTHO05D004982 2.5e-64 249.2 182 71.4
BcaC01g01437 Brassica carinata HOM05D004222 ORTHO05D004982 3.2e-64 248.8 181 72.4
C03p92020 Brassica napus HOM05D004222 ORTHO05D004982 3.2e-64 248.8 181 72.4
BolC3t21520H Brassica oleracea HOM05D004222 ORTHO05D004982 3.2e-64 248.8 181 72.4
TWI75G1350 Tripterygium wilfordii HOM05D004222 ORTHO05D004982 3.2e-64 248.8 174 73.0
Thecc.06G121100 Theobroma cacao HOM05D004222 ORTHO05D004982 4.2e-64 248.4 180 73.3
A08p01190 Brassica napus HOM05D004222 ORTHO05D004982 9.4e-64 247.3 181 71.8
BraA08t32170Z Brassica rapa HOM05D004222 ORTHO05D004982 9.4e-64 247.3 181 71.8
Ciclev10032895m.g Citrus clementina HOM05D004222 ORTHO05D004982 1.2e-63 246.9 179 72.6
Lsat_1_v5_gn_4_74980 Lactuca sativa HOM05D004222 ORTHO05D004982 1.2e-63 246.9 183 74.3
TAR626G0656 Trochodendron aralioides HOM05D004222 ORTHO05D004982 1.6e-63 246.5 174 74.7
Nn2g10347 Nelumbo nucifera HOM05D004222 ORTHO05D004982 2.7e-63 245.7 182 72.5
Sed0002362 Sechium edule HOM05D004222 ORTHO05D004982 2.7e-63 245.7 180 71.7
COL.COLO4_30749 Corchorus olitorius HOM05D004222 ORTHO05D004982 1.0e-62 243.8 180 73.9
Hma1.2p1_0074F.1_g038830 Hydrangea macrophylla HOM05D004222 ORTHO05D004982 1.0e-62 243.8 182 72.5
Hma1.2p1_3000F.1_g331525 Hydrangea macrophylla HOM05D004222 ORTHO05D004982 1.0e-62 243.8 182 72.5
Sp1g40590 Schrenkiella parvula HOM05D004222 ORTHO05D004982 1.4e-62 243.4 182 70.9
DCAR_002631 Daucus carota HOM05D004222 ORTHO05D004982 1.8e-62 243.0 182 73.6
Lj9A532G68 Lonicera japonica HOM05D004222 ORTHO05D004982 1.8e-62 243.0 179 72.1
Lj9C524T6 Lonicera japonica HOM05D004222 ORTHO05D004982 1.8e-62 243.0 179 72.1
Cc02_g29210 Coffea canephora HOM05D004222 ORTHO05D004982 2.3e-62 242.7 183 71.6
BcaB04g17022 Brassica carinata HOM05D004222 ORTHO05D004982 3.0e-62 242.3 181 69.6
DCAR_023344 Daucus carota HOM05D004222 ORTHO05D004982 3.0e-62 242.3 182 72.5
Ciclev10026608m.g Citrus clementina HOM05D004222 ORTHO05D004982 4.0e-62 241.9 179 71.5
ECA232G1089 Erigeron canadensis HOM05D004222 ORTHO05D004982 4.0e-62 241.9 183 72.7
AUR62000395 Chenopodium quinoa HOM05D004222 ORTHO05D004982 5.2e-62 241.5 174 70.7
Actinidia32191 Actinidia chinensis HOM05D004222 ORTHO05D004982 1.5e-61 240.0 179 69.8
AUR62006751 Chenopodium quinoa HOM05D004222 ORTHO05D004982 2.0e-61 239.6 175 72.0
MD09G1181700 Malus domestica HOM05D004222 ORTHO05D004982 2.6e-61 239.2 179 70.9
EL10Ac4g09456 Beta vulgaris HOM05D004222 ORTHO05D004982 1.3e-60 236.9 174 69.5
Cc04_g01280 Coffea canephora HOM05D004222 ORTHO05D004982 1.3e-60 236.9 181 70.2
Thhalv10012402m.g Eutrema salsugineum HOM05D004222 ORTHO05D004982 1.3e-60 236.9 184 69.0
Prupe.3G039800 Prunus persica HOM05D004222 ORTHO05D004982 3.7e-60 235.3 179 70.9
PSO135G0791 Papaver somniferum HOM05D004222 ORTHO05D004982 4.8e-60 235.0 181 70.7
Nitab4.5_0006737g0050 Nicotiana tabacum HOM05D004222 ORTHO05D004982 1.4e-59 233.4 187 68.4
PSO724G0032 Papaver somniferum HOM05D004222 ORTHO05D004982 1.8e-59 233.0 182 69.2
PGR042G1688 Punica granatum HOM05D004222 ORTHO05D004982 1.8e-59 233.0 153 73.2
CAN.G786.39 Capsicum annuum HOM05D004222 ORTHO05D004982 4.1e-59 231.9 188 69.1
Oeu026248.1 Olea europaea HOM05D004222 ORTHO05D004982 5.3e-59 231.5 179 69.8
Solyc04g010090.3 Solanum lycopersicum HOM05D004222 ORTHO05D004982 5.3e-59 231.5 187 68.4
Sopen04g005230 Solanum pennellii HOM05D004222 ORTHO05D004982 5.3e-59 231.5 187 68.4
SGA_v2.0_scaffold4G02066 Striga asiatica HOM05D004222 ORTHO05D004982 9.1e-59 230.7 181 66.9
Nitab4.5_0003780g0070 Nicotiana tabacum HOM05D004222 ORTHO05D004982 1.2e-58 230.3 187 67.9
PGSC0003DMG400011493 Solanum tuberosum HOM05D004222 ORTHO05D004982 1.2e-58 230.3 187 67.9
Ah.04g158670 Amaranthus hybridus HOM05D004222 ORTHO05D004982 1.6e-58 229.9 176 68.8
ECA232G2519 Erigeron canadensis HOM05D004222 ORTHO05D004982 1.6e-58 229.9 183 69.9
ATR0598G103 Amborella trichopoda HOM05D004222 ORTHO05D004982 7.7e-58 227.6 180 66.7
Migut.I01080 Erythranthe guttata HOM05D004222 ORTHO05D004982 7.7e-58 227.6 180 66.1
AT1G54140 Arabidopsis thaliana HOM05D004222 ORTHO05D004982 2.2e-57 226.1 186 68.3
AL1G62860 Arabidopsis lyrata HOM05D004222 ORTHO05D004982 6.5e-57 224.6 185 68.1
BcaC08g44165 Brassica carinata HOM05D004222 ORTHO05D004982 6.5e-57 224.6 181 67.4
SGA_v2.0_scaffold68G22854 Striga asiatica HOM05D004222 ORTHO05D004982 6.5e-57 224.6 179 67.0
SalBow6G6030 Salvia bowleyana HOM05D004222 ORTHO05D004982 8.5e-57 224.2 177 67.2
THA.LOC104810368 Tarenaya hassleriana HOM05D004222 ORTHO05D004982 8.5e-57 224.2 178 68.5
CARHR044490 Cardamine hirsuta HOM05D004222 ORTHO05D004982 1.1e-56 223.8 182 67.6
Carub.0001s4338 Capsella rubella HOM05D004222 ORTHO05D004982 4.2e-56 221.9 180 68.3
Oeu043649.1 Olea europaea HOM05D004222 ORTHO05D004982 5.5e-56 221.5 196 62.2
unitig_699.g19654 Utricularia gibba HOM05D004222 ORTHO05D004982 5.5e-56 221.5 179 66.5
BolC6t36754H Brassica oleracea HOM05D004222 ORTHO05D004982 3.6e-55 218.8 181 66.3
AL1G63010 Arabidopsis lyrata HOM05D004222 ORTHO05D004982 4.7e-55 218.4 186 66.7
BcaB02g10859 Brassica carinata HOM05D004222 ORTHO05D004982 1.4e-54 216.9 177 66.1
Peaxi162Scf00528g00226 Petunia axillaris HOM05D004222 ORTHO05D004982 1.8e-54 216.5 134 76.9
Ah.06g195960 Amaranthus hybridus HOM05D004222 ORTHO05D004982 2.3e-54 216.1 174 65.5
MSTRG.9521 Avicennia marina HOM05D004222 ORTHO05D004982 2.3e-54 216.1 180 65.6
SalBow6G2027 Salvia bowleyana HOM05D004222 ORTHO05D004982 2.3e-54 216.1 175 66.3
Aqoxy5G01362 Aquilegia oxysepala HOM05D004222 ORTHO05D004982 4.0e-54 215.3 177 65.0
C06p15670 Brassica napus HOM05D004222 ORTHO05D004982 4.0e-54 215.3 157 70.7
CANSAT64G2454 Cannabis sativa HOM05D004222 ORTHO05D004982 4.0e-54 215.3 185 66.5
SalBow6G3336 Salvia bowleyana HOM05D004222 ORTHO05D004982 6.8e-54 214.5 175 65.7
CDE08G1040 Ceratophyllum demersum HOM05D004222 ORTHO05D004982 2.0e-53 213.0 177 66.7
SHI11210 Sapria himalayana HOM05D004222 ORTHO05D004982 1.3e-52 210.3 179 62.6
Aa31LG10G1270 Aethionema arabicum HOM05D004222 ORTHO05D004982 4.8e-52 208.4 183 63.9
HPP92_016607 Vanilla planifolia HOM05D004222 ORTHO05D004982 4.8e-52 208.4 186 64.0
SEGI_03819 Sequoiadendron giganteum HOM05D004222 ORTHO05D004982 8.3e-52 207.6 175 65.7
Dinv10670 Davidia involucrata HOM05D004222 ORTHO05D004982 1.2e-50 203.8 159 69.2
HanXRQChr09g0262591 Helianthus annuus HOM05D004222 ORTHO05D004982 4.5e-50 201.8 158 69.0
MBI05_g15473_MAGBIO Magnolia biondii HOM05D004222 ORTHO05D004982 6.5e-49 198.0 177 62.1
Atru.chr1.2991 Acer truncatum HOM05D004222 ORTHO05D004982 9.4e-48 194.1 123 76.4
Os03g0408500 Oryza sativa ssp. japonica HOM05D004222 ORTHO05D004982 5.7e-45 184.9 175 60.6
SMO340G0157 Selaginella moellendorffii HOM05D004222 ORTHO05D004982 1.8e-43 179.9 138 62.3
Mapoly0152s0015 Marchantia polymorpha HOM05D004222 ORTHO05D004982 5.4e-43 178.3 175 54.9
Zm00001eb392970 Zea mays HOM05D004222 ORTHO05D004982 4.5e-42 175.3 146 63.7
Zm00001eb019630 Zea mays HOM05D004222 ORTHO05D004982 5.9e-42 174.9 180 56.1
CBR_g52315 Chara braunii HOM05D004222 ORTHO05D004982 1.0e-41 174.1 157 55.4
Pp3c19_19770 Physcomitrium patens HOM05D004222 ORTHO05D004982 1.7e-41 173.3 169 53.8
AagrBONN_evm.TU.Sc2ySwM_117.372 Anthoceros agrestis HOM05D004222 ORTHO05D004982 1.4e-38 163.7 164 52.4
Eucgr.J01267 Eucalyptus grandis HOM05D004222 ORTHO05D004982 1.5e-37 160.2 177 49.7
TPR.G12685 Trifolium pratense HOM05D004222 ORTHO05D004982 1.7e-36 156.8 95 81.1
AUR62029931 Chenopodium quinoa HOM05D004222 ORTHO05D004982 4.6e-34 148.7 91 76.9
AUR62033567 Chenopodium quinoa HOM05D004222 ORTHO05D004982 9.5e-32 141.0 88 76.1
AUR62043147 Chenopodium quinoa HOM05D004222 ORTHO05D004982 6.2e-31 138.3 88 73.9
Ah.06g188160 Amaranthus hybridus HOM05D000059 ORTHO05D004982 8.0e-31 137.9 124 59.7
TPR.G10895 Trifolium pratense HOM05D004222 ORTHO05D004982 1.5e-29 133.7 93 80.6
HanXRQChr14g0440851 Helianthus annuus HOM05D004222 ORTHO05D004982 3.4e-29 132.5 185 44.9
Cc02_g29240 Coffea canephora HOM05D004222 ORTHO05D004982 4.4e-29 132.1 119 64.7
Thhalv10029376m.g Eutrema salsugineum HOM05D004222 ORTHO05D004982 1.3e-28 130.6 116 64.7
C06p09920 Brassica napus HOM05D004222 ORTHO05D004982 2.2e-28 129.8 128 57.8
Duzib160G0511 Durio zibethinus HOM05D004222 ORTHO05D004982 4.9e-28 128.6 114 61.4
BcaC08g43594 Brassica carinata HOM05D004222 ORTHO05D004982 2.3e-22 109.8 90 67.8
BolC6t36064H Brassica oleracea HOM05D004222 ORTHO05D004982 2.3e-22 109.8 90 67.8
Cre07.g353350 Chlamydomonas reinhardtii HOM05D004222 ORTHO05D004982 6.8e-22 108.2 122 42.6
PRCOL_00004328 Prasinoderma coloniale HOM05D004222 ORTHO05D004982 2.0e-21 106.7 123 47.2
Haze_26828 Corylus avellana HOM05D000371 ORTHO05D004982 3.7e-20 102.4 113 42.5
FAN05G5041 Fragaria x ananassa HOM05D004222 ORTHO05D004982 2.7e-18 96.3 93 59.1
Os07g0612500 Oryza sativa ssp. japonica HOM05D004222 ORTHO05D004982 1.5e-16 90.5 138 36.2
Medtr6g027990 Medicago truncatula HOM05D004222 ORTHO05D004982 1.2e-13 80.9 60 68.3
AUR62034601 Chenopodium quinoa HOM05D004222 ORTHO05D004982 6.4e-12 75.1 48 72.9
MCO04G196 Micromonas commoda HOM05D004222 ORTHO05D004982 1.6e-10 70.5 89 38.2
unitig_52.g17107 Utricularia gibba HOM05D004222 ORTHO05D004982 2.7e-10 69.7 83 45.8
CARHR038570 Cardamine hirsuta HOM05D004222 ORTHO05D004982 1.9e-08 63.5 78 47.4
ECA238G1237 Erigeron canadensis HOM05D004222 ORTHO05D004982 1.6e-07 60.5 205 32.2
Nitab4.5_0018373g0020 Nicotiana tabacum HOM05D000428 ORTHO05D000582 1.8e-06 57.0 81 42.0


User provided reference genes

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